Ggra2997.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2997.t1
Unique NameGgra2997.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length173
Homology
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BLAST of Ggra2997.t1 vs. uniprot
Match: A0A2V3ISZ4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISZ4_9FLOR)

HSP 1 Score: 199 bits (505), Expect = 2.340e-62
Identity = 101/173 (58.38%), Postives = 125/173 (72.25%), Query Frame = 0 
Query:    1 MAVRKDVFHRFNWDDLTNAEKDAVSDVIGIAASRAGIGVGVVLTTAAILASVRKGKPPLPRYITYGGLSFFSLAGAYIGGISAGPLYAQRILAVPDSRLADELRTFIGDWKTRLPKDFDDSNVQPHAPLPDPDNPGSGADEIPPPPPSRAKSMEKLRNQ-QYSWTDRIGLTKP 172
            MA R      + WDDLT AEK+A+SDV+GIA++RA +GVG+VL+TAA+++S R+ KPPLP YI +G +S FSL GAY+GG+SAGPLY +RIL+VP+SRLAD+LRT I DWKTRLP D+D S  +PHAPLPDPDN                    K R Q Q +WTDRIGLTKP
Sbjct:    1 MAPRNAFLRGYKWDDLTEAEKEALSDVVGIASTRAAVGVGIVLSTAALMSSARRRKPPLPGYIRFGSVSIFSLIGAYLGGVSAGPLYVERILSVPNSRLADDLRTVINDWKTRLPSDYDTSGQEPHAPLPDPDNXXXXXXXXXX--XXXXXXXXKDRQQPQVTWTDRIGLTKP 171
[Close]
BLAST of Ggra2997.t1 vs. uniprot
Match: A0A2V3ICI0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ICI0_9FLOR)

HSP 1 Score: 120 bits (300), Expect = 5.860e-32
Identity = 53/85 (62.35%), Postives = 67/85 (78.82%), Query Frame = 0 
Query:   49 LASVRKGKPPLPRYITYGGLSFFSLAGAYIGGISAGPLYAQRILAVPDSRLADELRTFIGDWKTRLPKDFDDSNVQPHAPLPDPD 133
            ++S R+ KPPLP YI +G +S FSL GAY+GG+SAGP  +   L+VP+SRLAD+LRT I DWKTRLP D+D S  +PHAPLPDP+
Sbjct:    1 MSSARRRKPPLPGYIRFGSVSIFSLIGAYLGGVSAGPCMSSEFLSVPNSRLADDLRTVINDWKTRLPSDYDTSGQEPHAPLPDPE 85
The following BLAST results are available for this feature:
BLAST of Ggra2997.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3ISZ42.340e-6258.38Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ICI05.860e-3262.35Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 153..172
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..150
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 117..172
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 89..172
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 51..61
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..26
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 27..50
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 62..88
NoneNo IPR availableTMHMMTMhelixcoord: 62..84
NoneNo IPR availableTMHMMTMhelixcoord: 30..52

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:842494..843106 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2997.t1Ggra2997.t1Gracilaria gracilis GNS1m malemRNAtig00000858_pilon 842494..843106 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2997.t1 ID=Ggra2997.t1|Name=Ggra2997.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=173bp
MAVRKDVFHRFNWDDLTNAEKDAVSDVIGIAASRAGIGVGVVLTTAAILA
SVRKGKPPLPRYITYGGLSFFSLAGAYIGGISAGPLYAQRILAVPDSRLA
DELRTFIGDWKTRLPKDFDDSNVQPHAPLPDPDNPGSGADEIPPPPPSRA
KSMEKLRNQQYSWTDRIGLTKP*
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