Ggra2997.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2997.t1
Unique NameGgra2997.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length173
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:842494..843106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2997Ggra2997Gracilaria gracilis GNS1m malegenetig00000858_pilon 842494..843106 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2997.t1Ggra2997.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 842494..843106 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2997.t1.start1Ggra2997.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 842494..842496 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2997.t1.CDS1Ggra2997.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 842494..842647 +
Ggra2997.t1.CDS2Ggra2997.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000858_pilon 842742..843106 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2997.t1.exon1Ggra2997.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 842494..842647 +
Ggra2997.t1.exon2Ggra2997.t1.exon2Gracilaria gracilis GNS1m maleexontig00000858_pilon 842742..843106 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2997.t1.intron1Ggra2997.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000858_pilon 842648..842741 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2997.t1.stop1Ggra2997.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 843104..843106 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2997.t1 ID=Ggra2997.t1|Name=Ggra2997.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=173bp
MAVRKDVFHRFNWDDLTNAEKDAVSDVIGIAASRAGIGVGVVLTTAAILA
SVRKGKPPLPRYITYGGLSFFSLAGAYIGGISAGPLYAQRILAVPDSRLA
DELRTFIGDWKTRLPKDFDDSNVQPHAPLPDPDNPGSGADEIPPPPPSRA
KSMEKLRNQQYSWTDRIGLTKP*
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spliced messenger RNA

>Ggra2997.t1 ID=Ggra2997.t1|Name=Ggra2997.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=519bp|location=Sequence derived from alignment at tig00000858_pilon:842494..843106+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGTTCGAAAAGATGTGTTTCATCGTTTCAACTGGGATGACCTTAC
AAATGCCGAAAAAGATGCAGTGTCTGATGTAATAGGCATTGCCGCGTCTC
GAGCAGGTATTGGGGTCGGTGTAGTTCTGACCACTGCTGCAATTCTCGCA
AGCGTGAGGAAAGGAAAGCCCCCTTTACCCCGCTACATAACATACGGCGG
GCTTTCGTTCTTTTCTCTCGCAGGAGCGTACATTGGGGGCATTTCCGCGG
GTCCATTATACGCACAACGAATCCTGGCTGTACCAGATTCTCGACTCGCT
GATGAGCTGCGTACTTTTATCGGCGATTGGAAGACCAGACTCCCGAAAGA
TTTCGATGATTCTAATGTGCAACCCCATGCCCCTCTCCCAGACCCGGACA
ATCCCGGAAGTGGAGCGGACGAGATTCCTCCACCGCCTCCCTCTCGAGCG
AAAAGTATGGAAAAACTCCGAAACCAGCAATATAGTTGGACGGATCGCAT
TGGGCTGACTAAGCCGTAA
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protein sequence of Ggra2997.t1

>Ggra2997.t1 ID=Ggra2997.t1|Name=Ggra2997.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=173bp
MAVRKDVFHRFNWDDLTNAEKDAVSDVIGIAASRAGIGVGVVLTTAAILA
SVRKGKPPLPRYITYGGLSFFSLAGAYIGGISAGPLYAQRILAVPDSRLA
DELRTFIGDWKTRLPKDFDDSNVQPHAPLPDPDNPGSGADEIPPPPPSRA
KSMEKLRNQQYSWTDRIGLTKP*
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mRNA from alignment at tig00000858_pilon:842494..843106+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2997.t1 ID=Ggra2997.t1|Name=Ggra2997.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=613bp|location=Sequence derived from alignment at tig00000858_pilon:842494..843106+ (Gracilaria gracilis GNS1m male)
ATGGCCGTTCGAAAAGATGTGTTTCATCGTTTCAACTGGGATGACCTTAC
AAATGCCGAAAAAGATGCAGTGTCTGATGTAATAGGCATTGCCGCGTCTC
GAGCAGGTATTGGGGTCGGTGTAGTTCTGACCACTGCTGCAATTCTCGCA
AGCGGTAAGATGAAACTATATGGCAAATTCTTTTAGAATACGATGCTGAC
AAGCTCTTCATACGCCTCTTTTTATCTGAATCTGATTTGGCGATCCAGTG
AGGAAAGGAAAGCCCCCTTTACCCCGCTACATAACATACGGCGGGCTTTC
GTTCTTTTCTCTCGCAGGAGCGTACATTGGGGGCATTTCCGCGGGTCCAT
TATACGCACAACGAATCCTGGCTGTACCAGATTCTCGACTCGCTGATGAG
CTGCGTACTTTTATCGGCGATTGGAAGACCAGACTCCCGAAAGATTTCGA
TGATTCTAATGTGCAACCCCATGCCCCTCTCCCAGACCCGGACAATCCCG
GAAGTGGAGCGGACGAGATTCCTCCACCGCCTCCCTCTCGAGCGAAAAGT
ATGGAAAAACTCCGAAACCAGCAATATAGTTGGACGGATCGCATTGGGCT
GACTAAGCCGTAA
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Coding sequence (CDS) from alignment at tig00000858_pilon:842494..843106+

>Ggra2997.t1 ID=Ggra2997.t1|Name=Ggra2997.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=519bp|location=Sequence derived from alignment at tig00000858_pilon:842494..843106+ (Gracilaria gracilis GNS1m male)
ATGGCCGTTCGAAAAGATGTGTTTCATCGTTTCAACTGGGATGACCTTAC
AAATGCCGAAAAAGATGCAGTGTCTGATGTAATAGGCATTGCCGCGTCTC
GAGCAGGTATTGGGGTCGGTGTAGTTCTGACCACTGCTGCAATTCTCGCA
AGCGTGAGGAAAGGAAAGCCCCCTTTACCCCGCTACATAACATACGGCGG
GCTTTCGTTCTTTTCTCTCGCAGGAGCGTACATTGGGGGCATTTCCGCGG
GTCCATTATACGCACAACGAATCCTGGCTGTACCAGATTCTCGACTCGCT
GATGAGCTGCGTACTTTTATCGGCGATTGGAAGACCAGACTCCCGAAAGA
TTTCGATGATTCTAATGTGCAACCCCATGCCCCTCTCCCAGACCCGGACA
ATCCCGGAAGTGGAGCGGACGAGATTCCTCCACCGCCTCCCTCTCGAGCG
AAAAGTATGGAAAAACTCCGAAACCAGCAATATAGTTGGACGGATCGCAT
TGGGCTGACTAAGCCGTAA
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