Ggra2961.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2961.t1
Unique NameGgra2961.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length282
Homology
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BLAST of Ggra2961.t1 vs. uniprot
Match: A0A2V3IXF7 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXF7_9FLOR)

HSP 1 Score: 389 bits (1000), Expect = 3.590e-134
Identity = 193/281 (68.68%), Postives = 230/281 (81.85%), Query Frame = 0 
Query:    1 MLRSSSVTDLPDDVLLRILSLTGTLRVQFGTAFRLASVCNRFRRLIFSAYLPNISHISSDAIYTLSLADAHAARTAIDSMFASTVSLRTLNLSGCPSRLISHQSISSLIRVARHSLVDVNFAHCTLSDDVLRPFMTCPNLRRLILPSCDITGSMFRHSGPVAPVEELDLSWAHSLTQKGVEGVASMVTLKRLCLKGCDSVHNQTLQAFLRSDVSKSLEVVSLAFCPISNQCLIDFLRNTPQMKELVLAENRGNIWPQGLYTQAGIDAIRTQFPSLKLTFIT 281
            +LR++++ DLPDDVLLRILSL G LR Q GTAFRL  VC R RRL+   YLP + H++SDAIYTLSLADA+AAR A+D+MFA+T SL+TLNLSGC  RLIS  +ISSL+ VA+HSL +VNFAHC L+D+VL PFMTCPNLR LILPS  ITGSMF H+  VAP+E+LDLSW HSLT +GV  VA++VTLK LCLKGCD+V+ ++L AFL SD+ KSL  VS AFCP+ NQCLIDFLR TP +KEL+LAENRGNIWPQGLYT  GI AIR QFP + +TF+T
Sbjct:    2 LLRAANLIDLPDDVLLRILSLCGPLRAQVGTAFRLGCVCVRLRRLLLRHYLPALCHVTSDAIYTLSLADANAARAALDAMFAATSSLKTLNLSGCSPRLISQTTISSLVAVAKHSLTEVNFAHCALTDNVLAPFMTCPNLRTLILPSSRITGSMFLHAKRVAPLEKLDLSWVHSLTPEGVVAVANIVTLKTLCLKGCDAVNRESLNAFLNSDIRKSLRTVSFAFCPLRNQCLIDFLRRTPYLKELILAENRGNIWPQGLYTATGIHAIRLQFPHVNVTFVT 282
The following BLAST results are available for this feature:
BLAST of Ggra2961.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IXF73.590e-13468.68Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 84..111
e-value: 51.0
score: 9.0
coord: 137..161
e-value: 110.0
score: 6.3
coord: 186..211
e-value: 3.8
score: 16.5
coord: 214..238
e-value: 620.0
score: 0.6
NoneNo IPR availableGENE3D1.20.1280.50coord: 3..48
e-value: 1.6E-5
score: 26.7
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 54..251
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 49..276
e-value: 1.7E-19
score: 71.3
IPR001810F-box domainPROSITEPS50181FBOXcoord: 4..46
score: 8.570165
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 2..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:701100..701945 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2961.t1Ggra2961.t1Gracilaria gracilis GNS1m malemRNAtig00000858_pilon 701100..701945 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2961.t1 ID=Ggra2961.t1|Name=Ggra2961.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=282bp
MLRSSSVTDLPDDVLLRILSLTGTLRVQFGTAFRLASVCNRFRRLIFSAY
LPNISHISSDAIYTLSLADAHAARTAIDSMFASTVSLRTLNLSGCPSRLI
SHQSISSLIRVARHSLVDVNFAHCTLSDDVLRPFMTCPNLRRLILPSCDI
TGSMFRHSGPVAPVEELDLSWAHSLTQKGVEGVASMVTLKRLCLKGCDSV
HNQTLQAFLRSDVSKSLEVVSLAFCPISNQCLIDFLRNTPQMKELVLAEN
RGNIWPQGLYTQAGIDAIRTQFPSLKLTFIT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR032675LRR_dom_sf
IPR001810F-box_dom
IPR036047F-box-like_dom_sf