Ggra2961.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2961.t1
Unique NameGgra2961.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length282
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:701100..701945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705788.1
PFAMsLRR_6
Max annot lvl2759|Eukaryota
KEGG koko:K10268
Evalue1.52e-08
EggNOG OGsKOG1947@1|root,KOG1947@2759|Eukaryota
DescriptionF-box LRR-repeat protein
COG categoryB
BRITEko00000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2961Ggra2961Gracilaria gracilis GNS1m malegenetig00000858_pilon 701100..701945 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2961.t1.start1Ggra2961.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 701100..701102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2961.t1.CDS1Ggra2961.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 701100..701945 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2961.t1.exon1Ggra2961.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 701100..701945 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2961.t1.stop1Ggra2961.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 701943..701945 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2961.t1Ggra2961.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 701100..701945 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2961.t1 ID=Ggra2961.t1|Name=Ggra2961.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=282bp
MLRSSSVTDLPDDVLLRILSLTGTLRVQFGTAFRLASVCNRFRRLIFSAY
LPNISHISSDAIYTLSLADAHAARTAIDSMFASTVSLRTLNLSGCPSRLI
SHQSISSLIRVARHSLVDVNFAHCTLSDDVLRPFMTCPNLRRLILPSCDI
TGSMFRHSGPVAPVEELDLSWAHSLTQKGVEGVASMVTLKRLCLKGCDSV
HNQTLQAFLRSDVSKSLEVVSLAFCPISNQCLIDFLRNTPQMKELVLAEN
RGNIWPQGLYTQAGIDAIRTQFPSLKLTFIT*
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spliced messenger RNA

>Ggra2961.t1 ID=Ggra2961.t1|Name=Ggra2961.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=846bp|location=Sequence derived from alignment at tig00000858_pilon:701100..701945+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCGTAGTTCCAGTGTGACTGATTTGCCTGACGATGTGCTACTACG
CATCCTTTCCCTCACGGGCACCCTGCGCGTGCAGTTTGGAACAGCGTTTC
GCCTCGCTTCCGTTTGTAATCGATTTCGTCGTCTTATCTTTTCTGCCTAT
CTGCCGAATATATCGCACATATCTTCCGATGCTATCTACACGCTCTCGTT
GGCCGATGCACATGCCGCGAGAACGGCCATTGATTCCATGTTTGCTTCCA
CCGTGTCGTTGAGAACGCTTAATCTTAGCGGCTGTCCATCGCGCCTTATT
TCGCATCAGTCCATTTCCTCGCTCATTCGTGTGGCTCGTCATTCGCTTGT
TGATGTCAACTTTGCACATTGTACACTGAGCGACGATGTATTGCGACCGT
TCATGACTTGTCCTAATCTGAGACGCCTGATACTTCCGAGCTGTGATATA
ACCGGTTCAATGTTTCGTCATTCAGGACCCGTCGCTCCTGTTGAAGAACT
GGACTTATCGTGGGCCCATTCTCTAACTCAAAAAGGCGTGGAAGGCGTTG
CAAGTATGGTTACTCTCAAACGACTTTGTTTGAAAGGCTGCGATTCCGTT
CACAATCAAACCTTACAAGCGTTTTTGCGGTCGGATGTATCCAAGTCACT
TGAGGTCGTTTCCCTTGCTTTTTGTCCGATCAGTAACCAATGTCTCATTG
ACTTCCTTCGCAACACTCCTCAAATGAAAGAGCTTGTTCTTGCTGAAAAT
CGTGGCAATATATGGCCTCAAGGTCTTTACACGCAAGCCGGAATTGATGC
CATACGCACCCAATTTCCATCTCTGAAGCTCACGTTTATCACCTGA
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protein sequence of Ggra2961.t1

>Ggra2961.t1 ID=Ggra2961.t1|Name=Ggra2961.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=282bp
MLRSSSVTDLPDDVLLRILSLTGTLRVQFGTAFRLASVCNRFRRLIFSAY
LPNISHISSDAIYTLSLADAHAARTAIDSMFASTVSLRTLNLSGCPSRLI
SHQSISSLIRVARHSLVDVNFAHCTLSDDVLRPFMTCPNLRRLILPSCDI
TGSMFRHSGPVAPVEELDLSWAHSLTQKGVEGVASMVTLKRLCLKGCDSV
HNQTLQAFLRSDVSKSLEVVSLAFCPISNQCLIDFLRNTPQMKELVLAEN
RGNIWPQGLYTQAGIDAIRTQFPSLKLTFIT*
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mRNA from alignment at tig00000858_pilon:701100..701945+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2961.t1 ID=Ggra2961.t1|Name=Ggra2961.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=846bp|location=Sequence derived from alignment at tig00000858_pilon:701100..701945+ (Gracilaria gracilis GNS1m male)
ATGTTGCGTAGTTCCAGTGTGACTGATTTGCCTGACGATGTGCTACTACG
CATCCTTTCCCTCACGGGCACCCTGCGCGTGCAGTTTGGAACAGCGTTTC
GCCTCGCTTCCGTTTGTAATCGATTTCGTCGTCTTATCTTTTCTGCCTAT
CTGCCGAATATATCGCACATATCTTCCGATGCTATCTACACGCTCTCGTT
GGCCGATGCACATGCCGCGAGAACGGCCATTGATTCCATGTTTGCTTCCA
CCGTGTCGTTGAGAACGCTTAATCTTAGCGGCTGTCCATCGCGCCTTATT
TCGCATCAGTCCATTTCCTCGCTCATTCGTGTGGCTCGTCATTCGCTTGT
TGATGTCAACTTTGCACATTGTACACTGAGCGACGATGTATTGCGACCGT
TCATGACTTGTCCTAATCTGAGACGCCTGATACTTCCGAGCTGTGATATA
ACCGGTTCAATGTTTCGTCATTCAGGACCCGTCGCTCCTGTTGAAGAACT
GGACTTATCGTGGGCCCATTCTCTAACTCAAAAAGGCGTGGAAGGCGTTG
CAAGTATGGTTACTCTCAAACGACTTTGTTTGAAAGGCTGCGATTCCGTT
CACAATCAAACCTTACAAGCGTTTTTGCGGTCGGATGTATCCAAGTCACT
TGAGGTCGTTTCCCTTGCTTTTTGTCCGATCAGTAACCAATGTCTCATTG
ACTTCCTTCGCAACACTCCTCAAATGAAAGAGCTTGTTCTTGCTGAAAAT
CGTGGCAATATATGGCCTCAAGGTCTTTACACGCAAGCCGGAATTGATGC
CATACGCACCCAATTTCCATCTCTGAAGCTCACGTTTATCACCTGA
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Coding sequence (CDS) from alignment at tig00000858_pilon:701100..701945+

>Ggra2961.t1 ID=Ggra2961.t1|Name=Ggra2961.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=846bp|location=Sequence derived from alignment at tig00000858_pilon:701100..701945+ (Gracilaria gracilis GNS1m male)
ATGTTGCGTAGTTCCAGTGTGACTGATTTGCCTGACGATGTGCTACTACG
CATCCTTTCCCTCACGGGCACCCTGCGCGTGCAGTTTGGAACAGCGTTTC
GCCTCGCTTCCGTTTGTAATCGATTTCGTCGTCTTATCTTTTCTGCCTAT
CTGCCGAATATATCGCACATATCTTCCGATGCTATCTACACGCTCTCGTT
GGCCGATGCACATGCCGCGAGAACGGCCATTGATTCCATGTTTGCTTCCA
CCGTGTCGTTGAGAACGCTTAATCTTAGCGGCTGTCCATCGCGCCTTATT
TCGCATCAGTCCATTTCCTCGCTCATTCGTGTGGCTCGTCATTCGCTTGT
TGATGTCAACTTTGCACATTGTACACTGAGCGACGATGTATTGCGACCGT
TCATGACTTGTCCTAATCTGAGACGCCTGATACTTCCGAGCTGTGATATA
ACCGGTTCAATGTTTCGTCATTCAGGACCCGTCGCTCCTGTTGAAGAACT
GGACTTATCGTGGGCCCATTCTCTAACTCAAAAAGGCGTGGAAGGCGTTG
CAAGTATGGTTACTCTCAAACGACTTTGTTTGAAAGGCTGCGATTCCGTT
CACAATCAAACCTTACAAGCGTTTTTGCGGTCGGATGTATCCAAGTCACT
TGAGGTCGTTTCCCTTGCTTTTTGTCCGATCAGTAACCAATGTCTCATTG
ACTTCCTTCGCAACACTCCTCAAATGAAAGAGCTTGTTCTTGCTGAAAAT
CGTGGCAATATATGGCCTCAAGGTCTTTACACGCAAGCCGGAATTGATGC
CATACGCACCCAATTTCCATCTCTGAAGCTCACGTTTATCACCTGA
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