Ggra2956.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2956.t1
Unique NameGgra2956.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length235
Homology
BLAST of Ggra2956.t1 vs. uniprot
Match: A0A2V3IW72 (SAM domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IW72_9FLOR)

HSP 1 Score: 233 bits (593), Expect = 9.140e-74
Identity = 115/211 (54.50%), Postives = 162/211 (76.78%), Query Frame = 0
Query:   24 VGLISSSMQGNMESTDEVLRWLRLNGLSQYLASFRAHTVTGTSLMGLNSFELDNILGVTKLGDRRIILQGIDYLKQVFSVETQEAVPEDGRILTHLSNERVFLSWVRFAVILQTVAMATVRLENDSRERSLHFVMAVSVILCAIAIAVLLYSTYQYFMMHRMIESPGAEYVPENDIVAPPLFVALSATVVGLYATMAIDVETAAELAIMGV 234
             GL + ++  NM+ST+EV+RWL   G+ +Y A+FR H VTG+SL+ LN+ EL   LGV+KL DRRIIL+GI YL+Q  S E++ ++PEDGRILTHLSNERVFLSW+R A+ILQTVA+ATVRLEN   +R++ ++ A +++L  +AI +++Y T +YF MHRMIE+PG +++PEN+I+A PL V  +  V+GLYA +A + E AA LA++ V
Sbjct:   28 AGLRTYTLFENMDSTEEVVRWLFAIGMQKYTAAFRTHAVTGSSLLSLNTIELSQTLGVSKLKDRRIILEGIAYLRQTLSSESRHSIPEDGRILTHLSNERVFLSWLRLAIILQTVAIATVRLENPVVDRNVPYIKAFNIVLSVLAILIVIYGTARYFWMHRMIENPGEDHIPENNILAIPLLVVFAGIVIGLYAVLAQETEEAALLALIAV 238          
BLAST of Ggra2956.t1 vs. uniprot
Match: A0A1X6NJ70 (SAM domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NJ70_PORUM)

HSP 1 Score: 125 bits (315), Expect = 2.840e-31
Identity = 78/206 (37.86%), Postives = 118/206 (57.28%), Query Frame = 0
Query:   24 VGLISSSMQGNMESTDEVLRWLRLNGLSQYLASFRAHTVTGTSLMGLNSFELDNILGVTKLGDRRIILQGIDYLKQVFSVETQEAVPEDGRILTHLSNERVFLSWVRFAVILQTVAMATVRLE------NDSRER---SLHFVMAVSVILCAIAIAVLLYSTYQYFMMHRMIESPGAEYVPENDIVAPPLFVALSATVVGLYATMA 220
             GL ++S    +ES  EV  WL    L QY+++F +H V+  +L+ LNS EL + LGV  L  RR++L GI YL +    ET  A+PEDGRILTHLSNER +L W R  ++L  VA +T++LE      ND+      +  +V+AVS     +++  +LY+ +++    R+IE  G  +  +N   A P+ VA    ++ +Y  MA
Sbjct:   67 AGLAAASAFETLESPAEVATWLHAIDLPQYVSAFVSHGVSFGTLLTLNSVELRDALGVKPLAHRRLLLDGIAYLAETLHEETVAALPEDGRILTHLSNERTYLGWCRAVILLLAVATSTLQLELRAPPVNDAPAGVGVNHTWVVAVSTAFTLVSLGTVLYALWRFNWNWRVIEEAGRNFEADNVPRAAPVLVAGIGGLIVVYCVMA 272          
BLAST of Ggra2956.t1 vs. uniprot
Match: A0A7S3ECN3 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ECN3_9RHOD)

HSP 1 Score: 94.0 bits (232), Expect = 7.890e-20
Identity = 69/190 (36.32%), Postives = 101/190 (53.16%), Query Frame = 0
Query:   36 ESTDEVLRWLRLNGLSQYLASFRAHTVTGTSLMGLNSFELDNILGVTKLGDRRIILQGIDYLKQVFSVETQEAVPEDGRILTHLSNERVFLSWVRFAVILQTVAMATVRLENDSRERSLHFVMAVSVILCAIAIAVLLYSTYQYFMMHRMIESPGAEYVPENDIVAPPLFVALSATVVGLYATMAIDVET 225
            + TD V+ WL   G+  Y A F   TV  + L  L+  +L + LGVT + DRR I  GI  L  +     + A+PEDGRILTHL N RVF +W+R AV L   A+A   L        + F+   ++  C +AI  LL   ++YF++HR+ +      +  +DI   P+ V+ +AT    +AT +I V T
Sbjct:   33 DDTDAVVEWLERIGMGSYSAPFIEQTVDVSLLKSLSLKDLRDELGVTNMSDRRRIFNGI--LMLLSRDVDKYALPEDGRILTHLFNVRVFNAWIRCAVQLLIFAVAVNFLVFCD---DVTFIRNCAIGACIVAIVFLLVGFWRYFVIHRVSKRVNYNMLVPSDIGLIPVLVSAAAT----FATFSIIVMT 213          
BLAST of Ggra2956.t1 vs. uniprot
Match: A0A1X6PDD2 (SAM domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PDD2_PORUM)

HSP 1 Score: 77.4 bits (189), Expect = 1.510e-13
Identity = 59/201 (29.35%), Postives = 93/201 (46.27%), Query Frame = 0
Query:    1 MRSGSSLRREDDDEAQPKSGGASVGLISSSMQGNMESTDEVLRWLRLNGLSQYLASFRAHTVTGTSLMGLNSFELDNILGVTKLGDRRIILQGIDYLKQVFSVETQEA---------VPEDGRILTHLSNERVFLSWVRFAVILQTVAMATVRLE----NDSRERSLHFVMAVSVILCAIAIAVLLYSTYQYFMMHRMIES 188
            M SGSS     D    PK G   VG++       +++  EV+ W+   G  +Y  +F  H V+G  L  L + +L + LGV  L  RR ++  ID+L    +  T  A         +PE GR+LTH+SN R   SW R AV    +A   VRL      + ++    FV+A     C   +   +Y  +++  +  +++S
Sbjct:    1 MNSGSS----HDSVGDPKGG---VGMVQLPA---LDTPSEVVAWVSDLGFPEYAPAFLDHAVSGVILRSLTTEDLRDELGVKPLRHRRALIAAIDHLNSEETAGTPHAGLVTGTFSALPEFGRMLTHMSNVRTVHSWQRLAVQQLILAAGVVRLALVELKEEKDVLYRFVLAACSAFCGACVLFAVYGGWRFLKVTSILDS 191          
BLAST of Ggra2956.t1 vs. uniprot
Match: A0A7S2ZLH2 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZLH2_9RHOD)

HSP 1 Score: 62.4 bits (150), Expect = 8.740e-9
Identity = 39/92 (42.39%), Postives = 50/92 (54.35%), Query Frame = 0
Query:   36 ESTDEVLRWLRLNGLSQYLASFRAHTVTGTSLMGLNSFELDNILGVTKLGDRRIILQGIDYLKQVFSVETQEAVPEDGRILTHLSNERVFLS 127
            + TD V+ WL   G+  Y A F   TV  + L  L+  +L + LGVT + DRR I  GI  L  +     + A+PEDGRILTHL N   F S
Sbjct:   33 DDTDAVVEWLERIGMGSYSAPFIEQTVDVSLLKSLSLKDLRDELGVTNMSDRRRIFNGI--LMLLSRDVDKYALPEDGRILTHLFNVSPFPS 122          
The following BLAST results are available for this feature:
BLAST of Ggra2956.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IW729.140e-7454.50SAM domain-containing protein n=1 Tax=Gracilariops... [more]
A0A1X6NJ702.840e-3137.86SAM domain-containing protein n=1 Tax=Porphyra umb... [more]
A0A7S3ECN37.890e-2036.32Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A1X6PDD21.510e-1329.35SAM domain-containing protein n=1 Tax=Porphyra umb... [more]
A0A7S2ZLH28.740e-942.39Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001660Sterile alpha motif domainSMARTSM00454SAM_4coord: 33..100
e-value: 2.4E-8
score: 43.7
IPR001660Sterile alpha motif domainPFAMPF00536SAM_1coord: 37..98
e-value: 3.8E-11
score: 43.3
IPR001660Sterile alpha motif domainPROSITEPS50105SAM_DOMAINcoord: 36..100
score: 14.103343
IPR013761Sterile alpha motif/pointed domain superfamilyGENE3D1.10.150.50coord: 37..100
e-value: 3.7E-13
score: 51.7
IPR013761Sterile alpha motif/pointed domain superfamilySUPERFAMILY47769SAM/Pointed domaincoord: 37..101
IPR003807Domain of unknown function DUF202PFAMPF02656DUF202coord: 117..184
e-value: 1.1E-11
score: 45.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 176..234
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 124..143
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 155..175
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..123
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 144..154
NoneNo IPR availableTMHMMTMhelixcoord: 153..175
NoneNo IPR availableTMHMMTMhelixcoord: 124..143

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:688075..688779 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2956.t1Ggra2956.t1Gracilaria gracilis GNS1m malemRNAtig00000858_pilon 688075..688779 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2956.t1 ID=Ggra2956.t1|Name=Ggra2956.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=235bp
MRSGSSLRREDDDEAQPKSGGASVGLISSSMQGNMESTDEVLRWLRLNGL
SQYLASFRAHTVTGTSLMGLNSFELDNILGVTKLGDRRIILQGIDYLKQV
FSVETQEAVPEDGRILTHLSNERVFLSWVRFAVILQTVAMATVRLENDSR
ERSLHFVMAVSVILCAIAIAVLLYSTYQYFMMHRMIESPGAEYVPENDIV
APPLFVALSATVVGLYATMAIDVETAAELAIMGV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001660SAM
IPR013761SAM/pointed_sf
IPR003807DUF202