Ggra2956.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2956.t1
Unique NameGgra2956.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length235
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:688075..688779 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10228.TriadP52046
Preferred nameDGKD
PFAMsC1_1,DAGK_acc,DAGK_cat,PH,SAM_1,SAM_2
Max annot lvl33208|Metazoa
KEGG rclassRC00002,RC00017
KEGG koko:K00901
KEGG ReactionR02240
KEGG Pathwayko00561,ko00564,ko01100,ko01110,ko04070,ko04072,ko05231,map00561,map00564,map01100,map01110,map04070,map04072,map05231
GOsGO:0001775,GO:0003674,GO:0003824,GO:0004143,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005829,GO:0005886,GO:0006629,GO:0006638,GO:0006639,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0006950,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007173,GO:0007186,GO:0007205,GO:0007275,GO:0007596,GO:0007599,GO:0008150,GO:0008152,GO:0008289,GO:0009611,GO:0009987,GO:0010033,GO:0012505,GO:0016020,GO:0016043,GO:0016049,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019637,GO:0019932,GO:0019992,GO:0022607,GO:0023052,GO:0030168,GO:0030258,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0035556,GO:0038127,GO:0040007,GO:0042060,GO:0042221,GO:0042802,GO:0042803,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046339,GO:0046473,GO:0046486,GO:0046834,GO:0046982,GO:0046983,GO:0048856,GO:0050789,GO:0050794,GO:0050817,GO:0050878,GO:0050896,GO:0051259,GO:0051260,GO:0051716,GO:0065003,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0071944,GO:0097708
Evalue9.39e-05
EggNOG OGsKOG1170@1|root,KOG1170@2759|Eukaryota,38FXR@33154|Opisthokonta,3BCPJ@33208|Metazoa
EC2.7.1.107
Descriptiondiacylglycerol kinase activity
COG categoryT
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2956Ggra2956Gracilaria gracilis GNS1m malegenetig00000858_pilon 688075..688779 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2956.t1.start1Ggra2956.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 688075..688077 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2956.t1.CDS1Ggra2956.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 688075..688779 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2956.t1.exon1Ggra2956.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 688075..688779 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2956.t1.stop1Ggra2956.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 688777..688779 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2956.t1Ggra2956.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 688075..688779 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2956.t1 ID=Ggra2956.t1|Name=Ggra2956.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=235bp
MRSGSSLRREDDDEAQPKSGGASVGLISSSMQGNMESTDEVLRWLRLNGL
SQYLASFRAHTVTGTSLMGLNSFELDNILGVTKLGDRRIILQGIDYLKQV
FSVETQEAVPEDGRILTHLSNERVFLSWVRFAVILQTVAMATVRLENDSR
ERSLHFVMAVSVILCAIAIAVLLYSTYQYFMMHRMIESPGAEYVPENDIV
APPLFVALSATVVGLYATMAIDVETAAELAIMGV*
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spliced messenger RNA

>Ggra2956.t1 ID=Ggra2956.t1|Name=Ggra2956.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=705bp|location=Sequence derived from alignment at tig00000858_pilon:688075..688779+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTCTGGTTCGTCCTTGCGAAGAGAGGACGACGATGAAGCTCAGCC
AAAGAGTGGAGGTGCTTCGGTGGGATTGATTTCATCTTCAATGCAAGGAA
ACATGGAGAGTACAGATGAGGTTCTTCGATGGCTTCGTCTAAACGGTTTG
TCGCAGTATTTAGCTTCTTTTCGCGCTCATACAGTCACGGGAACTTCGCT
TATGGGGCTCAACTCCTTTGAACTCGATAATATTCTTGGAGTCACCAAAC
TGGGGGACCGCCGTATAATACTTCAAGGTATTGATTATCTCAAGCAAGTT
TTTAGTGTAGAAACCCAGGAAGCAGTACCAGAAGACGGGAGGATACTCAC
TCACTTGTCAAATGAAAGAGTGTTTTTAAGTTGGGTACGATTTGCGGTCA
TACTCCAGACGGTGGCCATGGCTACTGTGAGACTGGAAAACGATTCTCGG
GAGCGAAGTCTACATTTTGTTATGGCAGTTAGTGTCATACTATGTGCGAT
TGCAATCGCAGTCCTTTTGTATAGTACATACCAGTACTTCATGATGCACA
GAATGATTGAAAGCCCAGGAGCAGAATATGTTCCTGAAAACGATATTGTT
GCTCCGCCTTTGTTTGTCGCTTTATCCGCAACAGTAGTTGGCTTATACGC
GACAATGGCCATAGATGTGGAAACCGCAGCTGAACTGGCGATTATGGGAG
TTTAA
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protein sequence of Ggra2956.t1

>Ggra2956.t1 ID=Ggra2956.t1|Name=Ggra2956.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=235bp
MRSGSSLRREDDDEAQPKSGGASVGLISSSMQGNMESTDEVLRWLRLNGL
SQYLASFRAHTVTGTSLMGLNSFELDNILGVTKLGDRRIILQGIDYLKQV
FSVETQEAVPEDGRILTHLSNERVFLSWVRFAVILQTVAMATVRLENDSR
ERSLHFVMAVSVILCAIAIAVLLYSTYQYFMMHRMIESPGAEYVPENDIV
APPLFVALSATVVGLYATMAIDVETAAELAIMGV*
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mRNA from alignment at tig00000858_pilon:688075..688779+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2956.t1 ID=Ggra2956.t1|Name=Ggra2956.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=705bp|location=Sequence derived from alignment at tig00000858_pilon:688075..688779+ (Gracilaria gracilis GNS1m male)
ATGCGCTCTGGTTCGTCCTTGCGAAGAGAGGACGACGATGAAGCTCAGCC
AAAGAGTGGAGGTGCTTCGGTGGGATTGATTTCATCTTCAATGCAAGGAA
ACATGGAGAGTACAGATGAGGTTCTTCGATGGCTTCGTCTAAACGGTTTG
TCGCAGTATTTAGCTTCTTTTCGCGCTCATACAGTCACGGGAACTTCGCT
TATGGGGCTCAACTCCTTTGAACTCGATAATATTCTTGGAGTCACCAAAC
TGGGGGACCGCCGTATAATACTTCAAGGTATTGATTATCTCAAGCAAGTT
TTTAGTGTAGAAACCCAGGAAGCAGTACCAGAAGACGGGAGGATACTCAC
TCACTTGTCAAATGAAAGAGTGTTTTTAAGTTGGGTACGATTTGCGGTCA
TACTCCAGACGGTGGCCATGGCTACTGTGAGACTGGAAAACGATTCTCGG
GAGCGAAGTCTACATTTTGTTATGGCAGTTAGTGTCATACTATGTGCGAT
TGCAATCGCAGTCCTTTTGTATAGTACATACCAGTACTTCATGATGCACA
GAATGATTGAAAGCCCAGGAGCAGAATATGTTCCTGAAAACGATATTGTT
GCTCCGCCTTTGTTTGTCGCTTTATCCGCAACAGTAGTTGGCTTATACGC
GACAATGGCCATAGATGTGGAAACCGCAGCTGAACTGGCGATTATGGGAG
TTTAA
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Coding sequence (CDS) from alignment at tig00000858_pilon:688075..688779+

>Ggra2956.t1 ID=Ggra2956.t1|Name=Ggra2956.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=705bp|location=Sequence derived from alignment at tig00000858_pilon:688075..688779+ (Gracilaria gracilis GNS1m male)
ATGCGCTCTGGTTCGTCCTTGCGAAGAGAGGACGACGATGAAGCTCAGCC
AAAGAGTGGAGGTGCTTCGGTGGGATTGATTTCATCTTCAATGCAAGGAA
ACATGGAGAGTACAGATGAGGTTCTTCGATGGCTTCGTCTAAACGGTTTG
TCGCAGTATTTAGCTTCTTTTCGCGCTCATACAGTCACGGGAACTTCGCT
TATGGGGCTCAACTCCTTTGAACTCGATAATATTCTTGGAGTCACCAAAC
TGGGGGACCGCCGTATAATACTTCAAGGTATTGATTATCTCAAGCAAGTT
TTTAGTGTAGAAACCCAGGAAGCAGTACCAGAAGACGGGAGGATACTCAC
TCACTTGTCAAATGAAAGAGTGTTTTTAAGTTGGGTACGATTTGCGGTCA
TACTCCAGACGGTGGCCATGGCTACTGTGAGACTGGAAAACGATTCTCGG
GAGCGAAGTCTACATTTTGTTATGGCAGTTAGTGTCATACTATGTGCGAT
TGCAATCGCAGTCCTTTTGTATAGTACATACCAGTACTTCATGATGCACA
GAATGATTGAAAGCCCAGGAGCAGAATATGTTCCTGAAAACGATATTGTT
GCTCCGCCTTTGTTTGTCGCTTTATCCGCAACAGTAGTTGGCTTATACGC
GACAATGGCCATAGATGTGGAAACCGCAGCTGAACTGGCGATTATGGGAG
TTTAA
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