Ggra2905.t2 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2905.t2
Unique NameGgra2905.t2
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length251
Homology
BLAST of Ggra2905.t2 vs. uniprot
Match: A0A2V3J6H4 (U4/U6 small nuclear ribonucleoprotein Prp31-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6H4_9FLOR)

HSP 1 Score: 366 bits (939), Expect = 1.890e-122
Identity = 189/243 (77.78%), Postives = 217/243 (89.30%), Query Frame = 0
Query:    1 MPACNVKLLGKKRKALQGTSTSTTRLHEGVIHTCPLVISLPKQYRSKAGDVTAGKAVLAARVDLGRQRMDGTVGQSYRKALEAKFEQWMEPPPARTLKPLPVPGDEAKRRHRGGKRARKEKERLGLTEMRRLANRVSFGVQEQDGELEGEGLGMLGAEGSKSLRVKPKKSSSVASAAKRRLDKQKKKDVQSEAEKLGISGRDDVHTGTEIQLAAATSFPTMKPVESSSYFAASTPFYAAKKRR 243
            MP  NVKLLGK+RK+LQGTST+TTR+HEG IHTCPLV SLPKQYRSKAGDVTA KAVLAARVDLG    DG+VGQ++R+ LEAKF++WMEPPPARTLKPLP+PGDEAK+RHRGGKRARKEKERLG+TEMRRLANRV+FG QEQ+G+LEGEG+GMLGA+GSK+LRVKPKKS SV+ AAKRRLDKQKKKDV+SEAEKLG+SG   V++GTEIQLAA  SF  +KP   SSYF A+ PF+ AKKR+
Sbjct:  240 MPGSNVKLLGKQRKSLQGTSTATTRIHEGTIHTCPLVTSLPKQYRSKAGDVTACKAVLAARVDLGGGSHDGSVGQAFRENLEAKFDKWMEPPPARTLKPLPIPGDEAKKRHRGGKRARKEKERLGITEMRRLANRVAFGEQEQEGDLEGEGVGMLGADGSKTLRVKPKKSLSVSMAAKRRLDKQKKKDVRSEAEKLGLSGGAAVNSGTEIQLAATPSFAAVKPSSESSYFGAARPFHFAKKRK 482          
BLAST of Ggra2905.t2 vs. uniprot
Match: R7QF41 (U4/U6 small nuclear ribonucleoprotein Prp31, putative n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QF41_CHOCR)

HSP 1 Score: 269 bits (688), Expect = 1.620e-84
Identity = 151/252 (59.92%), Postives = 186/252 (73.81%), Query Frame = 0
Query:    1 MPACNVKLLGKKRKALQGTSTSTTRLHEGVIHTCPLVISLPKQYRSKAGDVTAGKAVLAARVDLGRQRMDGTVGQSYRKALEAKFEQWMEPPPARTLKPLPVPGDEAKRRHRGGKRARKEKERLGLTEMRRLANRVSFGVQEQ--DGELEGEGLGMLGAEGSKSLRVKPKKSSSVASAAKRRLDKQKKKDVQSEAEKLGISGRDDVHTGTEIQLAAATSFP---------TMKPVESSSYFAASTPFYAAKK 241
            MP+ NVK+LGK +K LQGTS++TT+LHEGVI+TCPLVI+LPKQYRSKAGDV  GKA LAARVD  R+++DG VG+  R+ LE KF +W EPPPA+TLKPLP+PGDEAKR+HRGGKRAR+EKERLG+T++RRLANRV FG QE+    +LE EG GMLGAEGSK LR++ KK+ SV+ AAKRRL KQK ++  SEA  LGI+     +    I+L A T  P         T      ++YF+ ST F   KK
Sbjct:  247 MPSSNVKVLGKGKKTLQGTSSATTKLHEGVIYTCPLVINLPKQYRSKAGDVLTGKASLAARVDACREQLDGNVGRKLREKLEEKFLKWQEPPPAKTLKPLPIPGDEAKRKHRGGKRARREKERLGITDIRRLANRVKFGQQEEVVGNDLENEGFGMLGAEGSKRLRIQSKKTDSVSIAAKRRLAKQKGRNGISEAAALGIT----TNLADGIELGAITPAPGGVGLGSMNTNAAKSETNYFSPSTRFMQVKK 494          
BLAST of Ggra2905.t2 vs. uniprot
Match: W1NHJ1 (Nop domain-containing protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1NHJ1_AMBTC)

HSP 1 Score: 154 bits (389), Expect = 2.140e-40
Identity = 90/186 (48.39%), Postives = 119/186 (63.98%), Query Frame = 0
Query:    1 MPACNVKLLGKKRKALQGTSTSTTRLHEGVIHTCPLVISLPKQYRSKAGDVTAGKAVLAARVDLGRQRMDGTVGQSYRKALEAKFEQWMEPPPARTLKPLPVPGDEAKRRHRGGKRARKEKERLGLTEMRRLANRVSFGVQEQD--GELEGEGLGMLGAEGSKSLRVKPKKSSSVASAAKRRLDKQ 184
            MPACN++LLG K+K L G ST+T++   G I    ++ S P   R +A  + AGK+ LA RVDL R    G +G+  R+++  K E+W EPPPA+  KPLPVP  E K++ RGG+R RK KER  +T+MR+LANR+ FGV E+   G+  GEG GMLG  GS  LRV    S   A AAK+  +KQ
Sbjct:  244 MPACNLQLLGAKKKNLAGFSTATSQFRVGYIEQTEIIQSTPPSLRIRACRLLAGKSTLAVRVDLERGDPTGQIGRDLRESIRKKIEKWQEPPPAKQPKPLPVPDSEPKKK-RGGRRLRKMKERYAITDMRKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSLGPSKLAAKAAKKFKEKQ 428          
BLAST of Ggra2905.t2 vs. uniprot
Match: U4/U6 small nuclear ribonucleoprotein Prp31 homolog isoform X2 n=2 Tax=Rosoideae TaxID=171638 RepID=UPI000D089049 (U4/U6 small nuclear ribonucleoprotein Prp31 homolog isoform X2 n=2 Tax=Rosoideae TaxID=171638 RepID=UPI000D089049)

HSP 1 Score: 152 bits (383), Expect = 5.650e-40
Identity = 87/185 (47.03%), Postives = 117/185 (63.24%), Query Frame = 0
Query:    1 MPACNVKLLGKKRKALQGTSTSTTRLHEGVIHTCPLVISLPKQYRSKAGDVTAGKAVLAARVDLGRQRMDGTVGQSYRKALEAKFEQWMEPPPARTLKPLPVPGDEAKRRHRGGKRARKEKERLGLTEMRRLANRVSFGVQEQD--GELEGEGLGMLGAEGSKSLRVKPKKSSSVASAAKRRLDK 183
            MPACNV+LLG K+K L G ST+T++   G +    +  + P   R +AG + A K+ LAARVD  R    G  G+++R+ +  K E+W EPPPA+  KPLPVP  E K++ RGG+R RK KER  +T+MR+LANR+ FG+ E+   G+  GEG GMLG  GS  LRV   +S   A  AK+  DK
Sbjct:  183 MPACNVQLLGAKKKNLAGFSTATSQYRIGYVEETEIFQTTPPALRMRAGRLLAAKSTLAARVDSTRGDPSGNTGKAFREEIRKKIEKWQEPPPAKQPKPLPVPDSEPKKK-RGGRRLRKMKERYAITDMRKLANRMQFGIPEESSLGDGLGEGYGMLGQAGSGKLRVSMGQSKLAAKVAKKFKDK 366          
BLAST of Ggra2905.t2 vs. uniprot
Match: V4VGM4 (Nop domain-containing protein n=7 Tax=malvids TaxID=91836 RepID=V4VGM4_CITCL)

HSP 1 Score: 152 bits (383), Expect = 1.650e-39
Identity = 89/181 (49.17%), Postives = 115/181 (63.54%), Query Frame = 0
Query:    1 MPACNVKLLGKKRKALQGTSTSTTRLHEGVIHTCPLVISLPKQYRSKAGDVTAGKAVLAARVDLGRQRMDGTVGQSYRKALEAKFEQWMEPPPARTLKPLPVPGDEAKRRHRGGKRARKEKERLGLTEMRRLANRVSFGVQEQD--GELEGEGLGMLGAEGSKSLRVKPKKSSSVASAAKR 179
            MPACNV+LLG K+K L G ST+T++   G +    +  S P   R +A  + A K+ LAARVD  R    GT G+S+R+ +  K E+W EPPPA+  KPLPVP  E K++ RGG+R RK KER  +T+MR+LANR+ FGV E+   G+  GEG GMLG  GS  LRV   +S   A  AKR
Sbjct:  247 MPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQEPPPAKQPKPLPVPDSEPKKK-RGGRRLRKMKERYAVTDMRKLANRMLFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSVGQSKLAAKVAKR 426          
BLAST of Ggra2905.t2 vs. uniprot
Match: M4ERU5 (Nop domain-containing protein n=32 Tax=Brassicaceae TaxID=3700 RepID=M4ERU5_BRARP)

HSP 1 Score: 152 bits (383), Expect = 1.650e-39
Identity = 84/167 (50.30%), Postives = 111/167 (66.47%), Query Frame = 0
Query:    1 MPACNVKLLGKKRKALQGTSTSTTRLHEGVIHTCPLVISLPKQYRSKAGDVTAGKAVLAARVDLGRQRMDGTVGQSYRKALEAKFEQWMEPPPARTLKPLPVPGDEAKRRHRGGKRARKEKERLGLTEMRRLANRVSFGVQEQD--GELEGEGLGMLGAEGSKSLRV 165
            MPACNV++LG KRK L G S++T++L  G +    +  S P   +S+AG + A K+ LAARVD  R    GT G++ R+ +  K E+W EPPPAR  KPLPVP  E K+R RGG+R RK KER  +T+MR+LANR++FG  E+   G+  GEG GMLG  GS  LR+
Sbjct:  246 MPACNVQVLGHKRKNLAGFSSATSQLRVGYLEQTEIFQSTPPALKSRAGRILAAKSTLAARVDATRGDPSGTNGKALREEIRKKIEKWQEPPPARQPKPLPVPDSEPKKR-RGGRRLRKMKERYAVTDMRKLANRMAFGTPEESSLGDGLGEGYGMLGQAGSNRLRI 411          
BLAST of Ggra2905.t2 vs. uniprot
Match: A0A068TVA5 (Nop domain-containing protein n=4 Tax=Coffea TaxID=13442 RepID=A0A068TVA5_COFCA)

HSP 1 Score: 151 bits (382), Expect = 3.100e-39
Identity = 90/186 (48.39%), Postives = 117/186 (62.90%), Query Frame = 0
Query:    1 MPACNVKLLGKKRKALQGTSTSTTRLHEGVIHTCPLVISLPKQYRSKAGDVTAGKAVLAARVDLGRQRMDGTVGQSYRKALEAKFEQWMEPPPARTLKPLPVPGDEAKRRHRGGKRARKEKERLGLTEMRRLANRVSFGVQEQD--GELEGEGLGMLGAEGSKSLRVKPKKSSSVASAAKRRLDKQ 184
            MPACNV+LLG KRK L G ST+ +++H G +    +  S P   R +A  + A K+ LAAR+D  +    G VG+S R  +  K E+W EPPPA+  KPLPVP  E K++ RGG+R RK KER  LT+MR+LANR++FGV E+   G+  GEG GMLG  GS  LRV    S   A  AK+  +KQ
Sbjct:  267 MPACNVQLLGAKRKTLAGFSTANSQIHVGYLEQTEIFQSTPPTLRKRACRLLAAKSTLAARIDSIKGDSTGKVGRSLRDEILKKIEKWQEPPPAKQPKPLPVPDSEPKKK-RGGRRLRKTKERYALTDMRKLANRMAFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSAGPSKLSAKVAKKFKEKQ 451          
BLAST of Ggra2905.t2 vs. uniprot
Match: A2Q2G1 (Pre-mRNA processing ribonucleoprotein, binding region; NOSIC n=26 Tax=rosids TaxID=71275 RepID=A2Q2G1_MEDTR)

HSP 1 Score: 150 bits (379), Expect = 6.050e-39
Identity = 86/181 (47.51%), Postives = 114/181 (62.98%), Query Frame = 0
Query:    1 MPACNVKLLGKKRKALQGTSTSTTRLHEGVIHTCPLVISLPKQYRSKAGDVTAGKAVLAARVDLGRQRMDGTVGQSYRKALEAKFEQWMEPPPARTLKPLPVPGDEAKRRHRGGKRARKEKERLGLTEMRRLANRVSFGVQEQD--GELEGEGLGMLGAEGSKSLRVKPKKSSSVASAAKR 179
            MPACNV+LLG K+K L G ST+T++ H G I    +  + P  +R +A  + A K+ LAARVD  R    G  G+S +  +  K E+W EPPPA+  KPLPVP  E K++ RGG+R RK KER  +T+MR+LANR+ FG+ E+   G+  GEG GMLG  GS  LRV   +S   A  AK+
Sbjct:  245 MPACNVQLLGAKKKNLAGFSTATSQFHVGYIEQTEIFQTTPPSFRMRACRLVAAKSTLAARVDSIRGDPSGKTGRSLKDEIHKKIEKWQEPPPAKQPKPLPVPDSEPKKK-RGGRRLRKMKERYAITDMRKLANRMQFGIPEESSLGDGLGEGYGMLGQAGSGKLRVSAGQSKLAAKVAKK 424          
BLAST of Ggra2905.t2 vs. uniprot
Match: A0A3Q7HUR2 (Nop domain-containing protein n=23 Tax=Pentapetalae TaxID=1437201 RepID=A0A3Q7HUR2_SOLLC)

HSP 1 Score: 150 bits (378), Expect = 8.300e-39
Identity = 89/181 (49.17%), Postives = 113/181 (62.43%), Query Frame = 0
Query:    1 MPACNVKLLGKKRKALQGTSTSTTRLHEGVIHTCPLVISLPKQYRSKAGDVTAGKAVLAARVDLGRQRMDGTVGQSYRKALEAKFEQWMEPPPARTLKPLPVPGDEAKRRHRGGKRARKEKERLGLTEMRRLANRVSFGVQEQD--GELEGEGLGMLGAEGSKSLRVKPKKSSSVASAAKR 179
            MPACNV+LLG KRK L G ST+T++ H G I    L  S P   R +A  + A K+ LAARVD       G  G+S R+ +  K E+W EPPPA+  KPLPVP  E K++ RGG+R RK KER  +T+MR+LANR+ FG+ E+   G+  GEG GMLG  GS  LRV   +S   A  AK+
Sbjct:  244 MPACNVQLLGAKRKNLAGFSTATSQFHVGYIEQTELFQSTPPSLRMRACRLLAAKSTLAARVDSINGDPVGKTGRSLREEIRKKIEKWQEPPPAKQPKPLPVPDSEPKKK-RGGRRLRKMKERYAITDMRKLANRMQFGIPEESSLGDGLGEGYGMLGQAGSGKLRVSVGQSKLAAKVAKK 423          
BLAST of Ggra2905.t2 vs. uniprot
Match: A0A498KP32 (Nop domain-containing protein n=13 Tax=fabids TaxID=91835 RepID=A0A498KP32_MALDO)

HSP 1 Score: 150 bits (378), Expect = 8.560e-39
Identity = 86/181 (47.51%), Postives = 113/181 (62.43%), Query Frame = 0
Query:    1 MPACNVKLLGKKRKALQGTSTSTTRLHEGVIHTCPLVISLPKQYRSKAGDVTAGKAVLAARVDLGRQRMDGTVGQSYRKALEAKFEQWMEPPPARTLKPLPVPGDEAKRRHRGGKRARKEKERLGLTEMRRLANRVSFGVQEQD--GELEGEGLGMLGAEGSKSLRVKPKKSSSVASAAKR 179
            MPACNV+LLG KRK L G ST+T+    G +    +  S P   R +A  + A K+ LAARVD  R    G  G+++R+ +  K E+W EPPPA+  KPLPVP  E K++ RGG+R RK KER  +T+MR+LANR+ FG+ E+   G+  GEG GMLG  GS  LRV   +S   A  AK+
Sbjct:  246 MPACNVQLLGAKRKNLAGFSTATSHFRVGYVEQTEIFQSTPPSLRMRACRLLAAKSTLAARVDSTRGDPSGNTGRAFREEIRKKIEKWQEPPPAKQPKPLPVPDSEPKKK-RGGRRLRKMKERYAITDMRKLANRMQFGIPEESSLGDGLGEGYGMLGQAGSGKLRVSMGQSKLAAKVAKK 425          
The following BLAST results are available for this feature:
BLAST of Ggra2905.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J6H41.890e-12277.78U4/U6 small nuclear ribonucleoprotein Prp31-like n... [more]
R7QF411.620e-8459.92U4/U6 small nuclear ribonucleoprotein Prp31, putat... [more]
W1NHJ12.140e-4048.39Nop domain-containing protein n=1 Tax=Amborella tr... [more]
U4/U6 small nuclear ribonucleoprotein Prp31 homolog isoform X2 n=2 Tax=Rosoideae TaxID=171638 RepID=UPI000D0890495.650e-4047.03U4/U6 small nuclear ribonucleoprotein Prp31 homolo... [more]
V4VGM41.650e-3949.17Nop domain-containing protein n=7 Tax=malvids TaxI... [more]
M4ERU51.650e-3950.30Nop domain-containing protein n=32 Tax=Brassicacea... [more]
A0A068TVA53.100e-3948.39Nop domain-containing protein n=4 Tax=Coffea TaxID... [more]
A2Q2G16.050e-3947.51Pre-mRNA processing ribonucleoprotein, binding reg... [more]
A0A3Q7HUR28.300e-3949.17Nop domain-containing protein n=23 Tax=Pentapetala... [more]
A0A498KP328.560e-3947.51Nop domain-containing protein n=13 Tax=fabids TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002687Nop domainPFAMPF01798Nopcoord: 1..86
e-value: 5.3E-15
score: 55.5
IPR002687Nop domainPROSITEPS51358NOPcoord: 1..90
score: 19.666126
IPR042239Nop, C-terminal domainGENE3D1.10.246.90Nop domaincoord: 1..89
e-value: 9.4E-18
score: 66.1
IPR019175Prp31 C-terminalPFAMPF09785Prp31_Ccoord: 96..195
e-value: 8.4E-23
score: 81.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 175..202
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 149..207
NoneNo IPR availablePANTHERPTHR13904:SF0U4/U6 SMALL NUCLEAR RIBONUCLEOPROTEIN PRP31coord: 1..233
IPR027105U4/U6 small nuclear ribonucleoprotein Prp31PANTHERPTHR13904PRE-MRNA SPLICING FACTOR PRP31coord: 1..233
IPR036070Nop domain superfamilySUPERFAMILY89124Nop domaincoord: 1..89

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:371652..372404 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2905.t2Ggra2905.t2Gracilaria gracilis GNS1m malemRNAtig00000858_pilon 371652..372404 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2905.t2 ID=Ggra2905.t2|Name=Ggra2905.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=251bp
MPACNVKLLGKKRKALQGTSTSTTRLHEGVIHTCPLVISLPKQYRSKAGD
VTAGKAVLAARVDLGRQRMDGTVGQSYRKALEAKFEQWMEPPPARTLKPL
PVPGDEAKRRHRGGKRARKEKERLGLTEMRRLANRVSFGVQEQDGELEGE
GLGMLGAEGSKSLRVKPKKSSSVASAAKRRLDKQKKKDVQSEAEKLGISG
RDDVHTGTEIQLAAATSFPTMKPVESSSYFAASTPFYAAKKRRTGTPDSK
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002687Nop_dom
IPR042239Nop_C
IPR019175Prp31_C
IPR027105Prp31
IPR036070Nop_dom_sf