Ggra2905.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2905.t2
Unique NameGgra2905.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length251
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:371652..372404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog13333.ERM95242
PFAMsNop,Prp31_C
Max annot lvl35493|Streptophyta
KEGG koko:K12844
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Evalue2.79e-39
EggNOG OGsCOG1498@1|root,KOG2574@2759|Eukaryota,37I4D@33090|Viridiplantae,3G7PQ@35493|Streptophyta
DescriptionU4 U6 small nuclear ribonucleoprotein
COG categoryA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2905Ggra2905Gracilaria gracilis GNS1m malegenetig00000858_pilon 371652..373130 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2905.t2.stop1Ggra2905.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 371652..371654 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2905.t2.CDS1Ggra2905.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 371652..372404 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2905.t2.exon1Ggra2905.t2.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 371652..372404 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2905.t2.start1Ggra2905.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 372402..372404 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2905.t2Ggra2905.t2Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 371652..372404 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2905.t2 ID=Ggra2905.t2|Name=Ggra2905.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=251bp
MPACNVKLLGKKRKALQGTSTSTTRLHEGVIHTCPLVISLPKQYRSKAGD
VTAGKAVLAARVDLGRQRMDGTVGQSYRKALEAKFEQWMEPPPARTLKPL
PVPGDEAKRRHRGGKRARKEKERLGLTEMRRLANRVSFGVQEQDGELEGE
GLGMLGAEGSKSLRVKPKKSSSVASAAKRRLDKQKKKDVQSEAEKLGISG
RDDVHTGTEIQLAAATSFPTMKPVESSSYFAASTPFYAAKKRRTGTPDSK
*
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spliced messenger RNA

>Ggra2905.t2 ID=Ggra2905.t2|Name=Ggra2905.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=753bp|location=Sequence derived from alignment at tig00000858_pilon:371652..372404- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGCTTGTAACGTTAAGCTTCTTGGGAAGAAAAGAAAAGCTCTTCA
GGGAACATCGACAAGCACAACACGTCTTCACGAAGGCGTAATACACACAT
GTCCGCTTGTGATAAGTCTACCAAAGCAATATCGCTCCAAGGCTGGGGAC
GTCACAGCCGGCAAGGCAGTCTTGGCTGCTCGTGTCGACCTTGGTCGCCA
GAGGATGGACGGAACCGTGGGCCAAAGCTACCGAAAGGCTCTCGAAGCAA
AGTTTGAGCAGTGGATGGAGCCTCCACCGGCCCGGACTCTCAAACCATTG
CCTGTACCTGGTGATGAGGCAAAGCGGAGGCATCGCGGTGGAAAGCGTGC
ACGAAAGGAAAAAGAACGCCTGGGACTCACTGAAATGCGCCGATTAGCGA
ATCGAGTGTCTTTTGGTGTACAAGAACAAGATGGAGAACTAGAGGGGGAA
GGCTTAGGAATGCTAGGCGCTGAAGGGTCCAAGAGTCTGCGAGTGAAGCC
AAAGAAGTCGTCTTCCGTCGCTTCGGCTGCAAAGAGACGATTAGATAAAC
AGAAGAAAAAAGATGTACAAAGTGAAGCTGAAAAGTTAGGCATATCGGGA
AGAGACGATGTGCACACAGGCACAGAGATTCAGCTCGCAGCCGCAACCTC
GTTCCCCACCATGAAACCAGTCGAGAGCTCCAGTTACTTCGCGGCGTCAA
CCCCATTCTATGCCGCAAAGAAACGAAGAACAGGTACTCCCGACTCCAAA
TAA
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protein sequence of Ggra2905.t2

>Ggra2905.t2 ID=Ggra2905.t2|Name=Ggra2905.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=251bp
MPACNVKLLGKKRKALQGTSTSTTRLHEGVIHTCPLVISLPKQYRSKAGD
VTAGKAVLAARVDLGRQRMDGTVGQSYRKALEAKFEQWMEPPPARTLKPL
PVPGDEAKRRHRGGKRARKEKERLGLTEMRRLANRVSFGVQEQDGELEGE
GLGMLGAEGSKSLRVKPKKSSSVASAAKRRLDKQKKKDVQSEAEKLGISG
RDDVHTGTEIQLAAATSFPTMKPVESSSYFAASTPFYAAKKRRTGTPDSK
*
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mRNA from alignment at tig00000858_pilon:371652..372404-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2905.t2 ID=Ggra2905.t2|Name=Ggra2905.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=753bp|location=Sequence derived from alignment at tig00000858_pilon:371652..372404- (Gracilaria gracilis GNS1m male)
ATGCCTGCTTGTAACGTTAAGCTTCTTGGGAAGAAAAGAAAAGCTCTTCA
GGGAACATCGACAAGCACAACACGTCTTCACGAAGGCGTAATACACACAT
GTCCGCTTGTGATAAGTCTACCAAAGCAATATCGCTCCAAGGCTGGGGAC
GTCACAGCCGGCAAGGCAGTCTTGGCTGCTCGTGTCGACCTTGGTCGCCA
GAGGATGGACGGAACCGTGGGCCAAAGCTACCGAAAGGCTCTCGAAGCAA
AGTTTGAGCAGTGGATGGAGCCTCCACCGGCCCGGACTCTCAAACCATTG
CCTGTACCTGGTGATGAGGCAAAGCGGAGGCATCGCGGTGGAAAGCGTGC
ACGAAAGGAAAAAGAACGCCTGGGACTCACTGAAATGCGCCGATTAGCGA
ATCGAGTGTCTTTTGGTGTACAAGAACAAGATGGAGAACTAGAGGGGGAA
GGCTTAGGAATGCTAGGCGCTGAAGGGTCCAAGAGTCTGCGAGTGAAGCC
AAAGAAGTCGTCTTCCGTCGCTTCGGCTGCAAAGAGACGATTAGATAAAC
AGAAGAAAAAAGATGTACAAAGTGAAGCTGAAAAGTTAGGCATATCGGGA
AGAGACGATGTGCACACAGGCACAGAGATTCAGCTCGCAGCCGCAACCTC
GTTCCCCACCATGAAACCAGTCGAGAGCTCCAGTTACTTCGCGGCGTCAA
CCCCATTCTATGCCGCAAAGAAACGAAGAACAGGTACTCCCGACTCCAAA
TAA
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Coding sequence (CDS) from alignment at tig00000858_pilon:371652..372404-

>Ggra2905.t2 ID=Ggra2905.t2|Name=Ggra2905.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=753bp|location=Sequence derived from alignment at tig00000858_pilon:371652..372404- (Gracilaria gracilis GNS1m male)
ATGCCTGCTTGTAACGTTAAGCTTCTTGGGAAGAAAAGAAAAGCTCTTCA
GGGAACATCGACAAGCACAACACGTCTTCACGAAGGCGTAATACACACAT
GTCCGCTTGTGATAAGTCTACCAAAGCAATATCGCTCCAAGGCTGGGGAC
GTCACAGCCGGCAAGGCAGTCTTGGCTGCTCGTGTCGACCTTGGTCGCCA
GAGGATGGACGGAACCGTGGGCCAAAGCTACCGAAAGGCTCTCGAAGCAA
AGTTTGAGCAGTGGATGGAGCCTCCACCGGCCCGGACTCTCAAACCATTG
CCTGTACCTGGTGATGAGGCAAAGCGGAGGCATCGCGGTGGAAAGCGTGC
ACGAAAGGAAAAAGAACGCCTGGGACTCACTGAAATGCGCCGATTAGCGA
ATCGAGTGTCTTTTGGTGTACAAGAACAAGATGGAGAACTAGAGGGGGAA
GGCTTAGGAATGCTAGGCGCTGAAGGGTCCAAGAGTCTGCGAGTGAAGCC
AAAGAAGTCGTCTTCCGTCGCTTCGGCTGCAAAGAGACGATTAGATAAAC
AGAAGAAAAAAGATGTACAAAGTGAAGCTGAAAAGTTAGGCATATCGGGA
AGAGACGATGTGCACACAGGCACAGAGATTCAGCTCGCAGCCGCAACCTC
GTTCCCCACCATGAAACCAGTCGAGAGCTCCAGTTACTTCGCGGCGTCAA
CCCCATTCTATGCCGCAAAGAAACGAAGAACAGGTACTCCCGACTCCAAA
TAA
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