Ggra2886.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2886.t1
Unique NameGgra2886.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length215
Homology
[Close]
BLAST of Ggra2886.t1 vs. uniprot
Match: A0A2V3IHZ9 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHZ9_9FLOR)

HSP 1 Score: 148 bits (374), Expect = 2.180e-41
Identity = 130/214 (60.75%), Postives = 141/214 (65.89%), Query Frame = 0 
Query:    1 MGAPHRCTHPGCSKQFDRKYNLKCHLRIHSDEKXXXXXXXXXXXXXXXXXXXXHHLLSLDHTSRKERQERLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSSLSFELGASCRVDGLPSPVGVLPSPTDVMAEPFRSAPVLVKPPVPPPLLAVFDDGAMAAPQLDALYQTLLF 214
            MGAPHRCTHPGC+KQFDRKYNLKCHLRIHSDEKXXXXXXXXXXXXXXXXXXXX HLLSLDHTS+KER ERL+                      XXXXXXXXXXXXXXXX                                ++L F+L A CR DG  SPVGVLPSPTDV+ +P R+ P   K   P PLL+VFDD AMAAPQLDALYQ+LLF
Sbjct:    1 MGAPHRCTHPGCTKQFDRKYNLKCHLRIHSDEKXXXXXXXXXXXXXXXXXXXXXHLLSLDHTSKKERLERLKRRRQTRAAQPTPNQHPPPARPRXXXXXXXXXXXXXXXXSPTVSSTPPTTPCIFLPTNHALEHPDG-----TALCFDLSA-CRSDGFASPVGVLPSPTDVIVDPVRTLPQAPKV-HPAPLLSVFDDAAMAAPQLDALYQSLLF 207
The following BLAST results are available for this feature:
BLAST of Ggra2886.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IHZ92.180e-4160.75Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 5..29
e-value: 0.031
score: 23.4
coord: 35..61
e-value: 0.11
score: 21.6
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 37..61
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 7..29
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 35..66
score: 11.156685
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 5..34
score: 13.94162
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 3..31
e-value: 8.8E-10
score: 40.2
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 32..78
e-value: 1.9E-7
score: 32.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..137
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..128
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 16..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:177453..178097 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2886.t1Ggra2886.t1Gracilaria gracilis GNS1m malemRNAtig00000858_pilon 177453..178097 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2886.t1 ID=Ggra2886.t1|Name=Ggra2886.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=215bp
MGAPHRCTHPGCSKQFDRKYNLKCHLRIHSDEKPYRCTYAHCPRRFRWKS
SLNHHLLSLDHTSRKERQERLRRRRQSRAASAASRAPTTSPNHHPPPPQP
QPPPPRPSSSSSPYATPPPQPPPPSSLTLAPTERVGGGGGVVSSLSFELG
ASCRVDGLPSPVGVLPSPTDVMAEPFRSAPVLVKPPVPPPLLAVFDDGAM
AAPQLDALYQTLLF*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf