Ggra2886.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2886.t1
Unique NameGgra2886.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length215
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:177453..178097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2886Ggra2886Gracilaria gracilis GNS1m malegenetig00000858_pilon 177453..178097 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2886.t1.start1Ggra2886.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 177453..177455 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2886.t1.CDS1Ggra2886.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 177453..178097 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2886.t1.exon1Ggra2886.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 177453..178097 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2886.t1.stop1Ggra2886.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 178095..178097 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2886.t1Ggra2886.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 177453..178097 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2886.t1 ID=Ggra2886.t1|Name=Ggra2886.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=215bp
MGAPHRCTHPGCSKQFDRKYNLKCHLRIHSDEKPYRCTYAHCPRRFRWKS
SLNHHLLSLDHTSRKERQERLRRRRQSRAASAASRAPTTSPNHHPPPPQP
QPPPPRPSSSSSPYATPPPQPPPPSSLTLAPTERVGGGGGVVSSLSFELG
ASCRVDGLPSPVGVLPSPTDVMAEPFRSAPVLVKPPVPPPLLAVFDDGAM
AAPQLDALYQTLLF*
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spliced messenger RNA

>Ggra2886.t1 ID=Ggra2886.t1|Name=Ggra2886.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=645bp|location=Sequence derived from alignment at tig00000858_pilon:177453..178097+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCGCCGCACCGCTGCACGCACCCCGGCTGCTCCAAGCAGTTTGA
CCGCAAGTACAACCTCAAGTGCCACCTGCGCATCCACTCGGACGAGAAGC
CGTACCGCTGCACGTACGCGCACTGCCCGCGTCGCTTCCGCTGGAAGTCG
TCGCTCAACCACCACCTACTCAGCCTGGATCACACGTCGCGCAAGGAGCG
CCAGGAGCGTCTACGCCGGCGCCGTCAATCTCGCGCCGCGTCCGCCGCGT
CGCGCGCGCCCACCACATCACCCAACCACCACccgccgccgccgcagccg
caaccgccgccgccgcgaccgtcgtcgtcgtcgtcgccgtacgccacgcc
gccgcctcagccgccgccgcCGTCGTCGCTCACGCTCGCGCCCACGGAGC
GCGTGGGCGGCGGCGGCGGCGTGGTGTCGTCGTTGTCGTTCGAGCTGGGC
GCCAGCTGTCGCGTGGACGGCTTGCCGTCGCCCGTGGGCGTGCTGCCGTC
GCCCACGGACGTGATGGCCGAGCCGTTCCGGTCGGCGCCAGTGCTGGTCA
AGCCGCCTGTGCCGCCGCCGCTGCTGGCCGTGTTCGACGACGGCGCCATG
GCTGCGCCGCAGCTGGACGCGCTGTATCAGACTCTTCTGTTCTAG
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protein sequence of Ggra2886.t1

>Ggra2886.t1 ID=Ggra2886.t1|Name=Ggra2886.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=215bp
MGAPHRCTHPGCSKQFDRKYNLKCHLRIHSDEKPYRCTYAHCPRRFRWKS
SLNHHLLSLDHTSRKERQERLRRRRQSRAASAASRAPTTSPNHHPPPPQP
QPPPPRPSSSSSPYATPPPQPPPPSSLTLAPTERVGGGGGVVSSLSFELG
ASCRVDGLPSPVGVLPSPTDVMAEPFRSAPVLVKPPVPPPLLAVFDDGAM
AAPQLDALYQTLLF*
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mRNA from alignment at tig00000858_pilon:177453..178097+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2886.t1 ID=Ggra2886.t1|Name=Ggra2886.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=645bp|location=Sequence derived from alignment at tig00000858_pilon:177453..178097+ (Gracilaria gracilis GNS1m male)
ATGGGCGCGCCGCACCGCTGCACGCACCCCGGCTGCTCCAAGCAGTTTGA
CCGCAAGTACAACCTCAAGTGCCACCTGCGCATCCACTCGGACGAGAAGC
CGTACCGCTGCACGTACGCGCACTGCCCGCGTCGCTTCCGCTGGAAGTCG
TCGCTCAACCACCACCTACTCAGCCTGGATCACACGTCGCGCAAGGAGCG
CCAGGAGCGTCTACGCCGGCGCCGTCAATCTCGCGCCGCGTCCGCCGCGT
CGCGCGCGCCCACCACATCACCCAACCACCACccgccgccgccgcagccg
caaccgccgccgccgcgaccgtcgtcgtcgtcgtcgccgtacgccacgcc
gccgcctcagccgccgccgcCGTCGTCGCTCACGCTCGCGCCCACGGAGC
GCGTGGGCGGCGGCGGCGGCGTGGTGTCGTCGTTGTCGTTCGAGCTGGGC
GCCAGCTGTCGCGTGGACGGCTTGCCGTCGCCCGTGGGCGTGCTGCCGTC
GCCCACGGACGTGATGGCCGAGCCGTTCCGGTCGGCGCCAGTGCTGGTCA
AGCCGCCTGTGCCGCCGCCGCTGCTGGCCGTGTTCGACGACGGCGCCATG
GCTGCGCCGCAGCTGGACGCGCTGTATCAGACTCTTCTGTTCTAG
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Coding sequence (CDS) from alignment at tig00000858_pilon:177453..178097+

>Ggra2886.t1 ID=Ggra2886.t1|Name=Ggra2886.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=645bp|location=Sequence derived from alignment at tig00000858_pilon:177453..178097+ (Gracilaria gracilis GNS1m male)
ATGGGCGCGCCGCACCGCTGCACGCACCCCGGCTGCTCCAAGCAGTTTGA
CCGCAAGTACAACCTCAAGTGCCACCTGCGCATCCACTCGGACGAGAAGC
CGTACCGCTGCACGTACGCGCACTGCCCGCGTCGCTTCCGCTGGAAGTCG
TCGCTCAACCACCACCTACTCAGCCTGGATCACACGTCGCGCAAGGAGCG
CCAGGAGCGTCTACGCCGGCGCCGTCAATCTCGCGCCGCGTCCGCCGCGT
CGCGCGCGCCCACCACATCACCCAACCACCACccgccgccgccgcagccg
caaccgccgccgccgcgaccgtcgtcgtcgtcgtcgccgtacgccacgcc
gccgcctcagccgccgccgcCGTCGTCGCTCACGCTCGCGCCCACGGAGC
GCGTGGGCGGCGGCGGCGGCGTGGTGTCGTCGTTGTCGTTCGAGCTGGGC
GCCAGCTGTCGCGTGGACGGCTTGCCGTCGCCCGTGGGCGTGCTGCCGTC
GCCCACGGACGTGATGGCCGAGCCGTTCCGGTCGGCGCCAGTGCTGGTCA
AGCCGCCTGTGCCGCCGCCGCTGCTGGCCGTGTTCGACGACGGCGCCATG
GCTGCGCCGCAGCTGGACGCGCTGTATCAGACTCTTCTGTTCTAG
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