Ggra287.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra287.t1
Unique Name	Ggra287.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	198

Homology

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BLAST of Ggra287.t1 vs. uniprot
Match: S0F2U0 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=S0F2U0_CHOCR)

HSP 1 Score: 181 bits (458), Expect = 4.760e-54
Identity = 95/197 (48.22%), Postives = 128/197 (64.97%), Query Frame = 0

Query:   39 DVRNRMNEFVDTVKHAVDDVEAAFKKRDFVDLNQSLSMLEAKFS--------------------------------------MSQREELGRLSSDIKEVDSAIRALREGLTTFEKDVGKLHRVIADLHVSHNEMSSVHDETKEKVKEVVADAHQMARTSTHWIFYLVIILELGGFVGYMYFKKSGGTLAHRAYGKFG 197
            D+R+RMN+ VD+VK AV D E+A KKR+ VDL QSL +LE KFS                                      ++QRE+L RL+ D+KEVDSAIRALREGL+ FEKD  +L++V+ DLHVSHNE+ S H+E    VKE++AD+H++ R STH +FY +++LE+   V ++YFK+ GG LAH+AYGKFG
Sbjct:   32 DMRHRMNDLVDSVKGAVHDAESAGKKREVVDLGQSLHLLETKFSALRQALQQELGAKSSTLASSSAVATELVDRSNTLIRNIVTQREDLRRLTGDVKEVDSAIRALREGLSNFEKDAAELNKVMGDLHVSHNELKSAHEEAHSSVKELMADSHEVVRKSTHGLFYAILLLEIASLVAFVYFKRPGGQLAHKAYGKFG 228

[Close]

BLAST of Ggra287.t1 vs. uniprot
Match: A0A2V3IU64 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IU64_9FLOR)

HSP 1 Score: 158 bits (399), Expect = 4.560e-45
Identity = 92/196 (46.94%), Postives = 115/196 (58.67%), Query Frame = 0

Query:   40 VRNRMNEFVDTVKHAVDDVEAAFKKRDFVDLNQSLSMLEAKFS--------------------------------------MSQREELGRLSSDIKEVDSAIRALREGLTTFEKDVGKLHRVIADLHVSHNEMSSVHDETKEKVKEVVADAHQMARTSTHWIFYLVIILELGGFVGYMYFKKSGGTLAHRAYGKFG 197
            VR+ MNEFV+TVKHAV++ E+A  K+D VDL QSL+MLE KFS                                      ++QREEL RLSSD+K+VDSAIRAL                      VSHNEMS+VHDE KEK+KEVVADAH MA+TSTH + Y+++  E+ GFV Y+Y K+   + AH+AYGKFG
Sbjct:   39 VRDEMNEFVNTVKHAVNEAESASNKKDVVDLGQSLAMLEKKFSSLRSALAQELGAKAPNLASNNAVAKELMDKSTNLVQGVVTQREELRRLSSDVKQVDSAIRALXXXXXXXXXXXXXXXXXXXXXXVSHNEMSAVHDEAKEKLKEVVADAHHMAQTSTHSLLYILVAAEVAGFVLYLYVKRPASSFAHKAYGKFG 234

The following BLAST results are available for this feature:

BLAST of Ggra287.t1 vs. uniprot

BLAST of Ggra287.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
S0F2U0	4.760e-54	48.22	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]
A0A2V3IU64	4.560e-45	46.94	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 182..197
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..8
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 162..181
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 21..25
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 26..161
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 9..20
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..25
None	No IPR available	TMHMM	TMhelix		coord: 162..181

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000112_pilon	contig	tig00000112_pilon:48597..49304 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra287.t1	Ggra287.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000112_pilon 48597..49304 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra287.t1 ID=Ggra287.t1|Name=Ggra287.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=198bp
MLHSTTIRFVVLLLLLQALVSRAHADYDSQRTAEEQQQDVRNRMNEFVDT
VKHAVDDVEAAFKKRDFVDLNQSLSMLEAKFSMSQREELGRLSSDIKEVD
SAIRALREGLTTFEKDVGKLHRVIADLHVSHNEMSSVHDETKEKVKEVVA
DAHQMARTSTHWIFYLVIILELGGFVGYMYFKKSGGTLAHRAYGKFG*