Ggra287.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra287.t1
Unique NameGgra287.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length198
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000112_piloncontigtig00000112_pilon:48597..49304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra287Ggra287Gracilaria gracilis GNS1m malegenetig00000112_pilon 48597..49304 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra287.t1Ggra287.t1Gracilaria gracilis GNS1m malepolypeptidetig00000112_pilon 48597..49304 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra287.t1.start1Ggra287.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000112_pilon 48597..48599 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra287.t1.CDS1Ggra287.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000112_pilon 48597..48843 +
Ggra287.t1.CDS2Ggra287.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000112_pilon 48958..49304 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra287.t1.exon1Ggra287.t1.exon1Gracilaria gracilis GNS1m maleexontig00000112_pilon 48597..48843 +
Ggra287.t1.exon2Ggra287.t1.exon2Gracilaria gracilis GNS1m maleexontig00000112_pilon 48958..49304 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra287.t1.intron1Ggra287.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000112_pilon 48844..48957 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra287.t1.stop1Ggra287.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000112_pilon 49302..49304 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra287.t1 ID=Ggra287.t1|Name=Ggra287.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=198bp
MLHSTTIRFVVLLLLLQALVSRAHADYDSQRTAEEQQQDVRNRMNEFVDT
VKHAVDDVEAAFKKRDFVDLNQSLSMLEAKFSMSQREELGRLSSDIKEVD
SAIRALREGLTTFEKDVGKLHRVIADLHVSHNEMSSVHDETKEKVKEVVA
DAHQMARTSTHWIFYLVIILELGGFVGYMYFKKSGGTLAHRAYGKFG*
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spliced messenger RNA

>Ggra287.t1 ID=Ggra287.t1|Name=Ggra287.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=594bp|location=Sequence derived from alignment at tig00000112_pilon:48597..49304+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCATTCCACAACAATACGTTTCGTCGTGCTCTTGCTACTCCTTCA
AGCACTTGTATCGCGCGCTCATGCAGACTATGACTCTCAAAGAACAGCAG
AAGAGCAGCAGCAAGACGTTCGCAATCGCATGAATGAGTTCGTCGACACC
GTGAAACACGCCGTCGACGATGTAGAAGCCGCCTTCAAGAAAAGAGACTT
CGTCGATCTAAATCAATCTTTAAGCATGCTCGAGGCAAAGTTCTCCATGT
CACAACGCGAAGAACTGGGTCGGCTTTCATCTGACATTAAGGAGGTGGAC
TCTGCCATTCGAGCGCTGCGCGAGGGGTTGACTACATTTGAAAAGGACGT
GGGCAAACTGCACAGAGTCATTGCAGACTTGCATGTGTCACACAATGAGA
TGTCATCGGTGCACGACGAAACAAAAGAAAAGGTGAAAGAAGTTGTGGCC
GACGCACATCAAATGGCACGAACCAGCACGCACTGGATATTTTATCTTGT
AATCATTCTAGAACTCGGTGGGTTTGTGGGTTACATGTACTTTAAGAAGT
CAGGTGGTACACTTGCACACAGAGCGTATGGAAAGTTTGGTTAA
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protein sequence of Ggra287.t1

>Ggra287.t1 ID=Ggra287.t1|Name=Ggra287.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=198bp
MLHSTTIRFVVLLLLLQALVSRAHADYDSQRTAEEQQQDVRNRMNEFVDT
VKHAVDDVEAAFKKRDFVDLNQSLSMLEAKFSMSQREELGRLSSDIKEVD
SAIRALREGLTTFEKDVGKLHRVIADLHVSHNEMSSVHDETKEKVKEVVA
DAHQMARTSTHWIFYLVIILELGGFVGYMYFKKSGGTLAHRAYGKFG*
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mRNA from alignment at tig00000112_pilon:48597..49304+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra287.t1 ID=Ggra287.t1|Name=Ggra287.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=708bp|location=Sequence derived from alignment at tig00000112_pilon:48597..49304+ (Gracilaria gracilis GNS1m male)
ATGCTTCATTCCACAACAATACGTTTCGTCGTGCTCTTGCTACTCCTTCA
AGCACTTGTATCGCGCGCTCATGCAGACTATGACTCTCAAAGAACAGCAG
AAGAGCAGCAGCAAGACGTTCGCAATCGCATGAATGAGTTCGTCGACACC
GTGAAACACGCCGTCGACGATGTAGAAGCCGCCTTCAAGAAAAGAGACTT
CGTCGATCTAAATCAATCTTTAAGCATGCTCGAGGCAAAGTTCTCCAGTT
TACGATCTGCATTAGCACATTAACTCGGACCACGAGCTCCTCAATTCGCC
TCCAACAATAAAGTGGCGAAATAGGTTACGGATAAGAGCTCCGGTCTTGT
CAAAGGTGTAGTGTCACAACGCGAAGAACTGGGTCGGCTTTCATCTGACA
TTAAGGAGGTGGACTCTGCCATTCGAGCGCTGCGCGAGGGGTTGACTACA
TTTGAAAAGGACGTGGGCAAACTGCACAGAGTCATTGCAGACTTGCATGT
GTCACACAATGAGATGTCATCGGTGCACGACGAAACAAAAGAAAAGGTGA
AAGAAGTTGTGGCCGACGCACATCAAATGGCACGAACCAGCACGCACTGG
ATATTTTATCTTGTAATCATTCTAGAACTCGGTGGGTTTGTGGGTTACAT
GTACTTTAAGAAGTCAGGTGGTACACTTGCACACAGAGCGTATGGAAAGT
TTGGTTAA
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Coding sequence (CDS) from alignment at tig00000112_pilon:48597..49304+

>Ggra287.t1 ID=Ggra287.t1|Name=Ggra287.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=594bp|location=Sequence derived from alignment at tig00000112_pilon:48597..49304+ (Gracilaria gracilis GNS1m male)
ATGCTTCATTCCACAACAATACGTTTCGTCGTGCTCTTGCTACTCCTTCA
AGCACTTGTATCGCGCGCTCATGCAGACTATGACTCTCAAAGAACAGCAG
AAGAGCAGCAGCAAGACGTTCGCAATCGCATGAATGAGTTCGTCGACACC
GTGAAACACGCCGTCGACGATGTAGAAGCCGCCTTCAAGAAAAGAGACTT
CGTCGATCTAAATCAATCTTTAAGCATGCTCGAGGCAAAGTTCTCCATGT
CACAACGCGAAGAACTGGGTCGGCTTTCATCTGACATTAAGGAGGTGGAC
TCTGCCATTCGAGCGCTGCGCGAGGGGTTGACTACATTTGAAAAGGACGT
GGGCAAACTGCACAGAGTCATTGCAGACTTGCATGTGTCACACAATGAGA
TGTCATCGGTGCACGACGAAACAAAAGAAAAGGTGAAAGAAGTTGTGGCC
GACGCACATCAAATGGCACGAACCAGCACGCACTGGATATTTTATCTTGT
AATCATTCTAGAACTCGGTGGGTTTGTGGGTTACATGTACTTTAAGAAGT
CAGGTGGTACACTTGCACACAGAGCGTATGGAAAGTTTGGTTAA
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