Ggra2832.t2 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2832.t2
Unique NameGgra2832.t2
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length509
Homology
BLAST of Ggra2832.t2 vs. uniprot
Match: A0A077WAD4 (F-box domain-containing protein n=1 Tax=Lichtheimia ramosa TaxID=688394 RepID=A0A077WAD4_9FUNG)

HSP 1 Score: 62.8 bits (151), Expect = 7.610e-7
Identity = 46/151 (30.46%), Postives = 72/151 (47.68%), Query Frame = 0
Query:  146 CVSRVSCSSRYVSSFCIGAPSLRRLQLHACEQLSDEMLETLSQRCTQLQTLCISAAPNITDHGVHSVCSSALARSLRSMHLADC-GVTDDALVAIATSCHALHELNLCCCSGVSTWGVRAIAEGLGSFLQRLSIVHCEQVDDEAFVSIADN 295
            C+       R +S++C   P++  LQL  C  LS   +       TQLQ L +S    +T+  +HSV   A   SL  ++LA C  ++   L A+A SC  L  LNL  C  +    +  +   L + +Q+LS+  C  + D+A +S   N
Sbjct:   90 CLQLTGHGLRTLSNYC---PNIHNLQLRDCRSLSTHSIACFLHTATQLQALDLSCLDTVTNTTLHSV---AQLPSLERLNLAWCRNISGAGLQAVARSCIHLTFLNLNGCPQLDETTMATLGHSL-THIQQLSVASCTSLTDQALLSFLQN 233          
BLAST of Ggra2832.t2 vs. uniprot
Match: A0A814MC46 (Hypothetical protein n=4 Tax=Adineta steineri TaxID=433720 RepID=A0A814MC46_9BILA)

HSP 1 Score: 61.2 bits (147), Expect = 9.730e-7
Identity = 38/152 (25.00%), Postives = 77/152 (50.66%), Query Frame = 0
Query:  165 PSLRRLQLHACEQLSDEMLETLSQRCTQLQTLCISAAPNITDHGVHSVCSSALARSLRSMHLADCGVTDDALVAIATSC--HALHELNLCCCSGVSTWGVRAIAEGLGSFLQRLSIVHCEQVDDEAFVSIADNCDELRMLSIGSLPNVTDEA 314
            PSLR++++  C QL+DE +  + + C++L  L ++    ITD G++S+        LRS+ L+   ++D++L++I  S   + L+E+NL                       R+    C+++ D+ F+ +  NC +L+ +     P +T+ +
Sbjct:  136 PSLRKIRVQNCSQLTDESICAIGKYCSRLMELDLTGCIKITDEGINSLRQLPY---LRSLGLSQTQISDNSLISIGQSSFHYTLNEINL-----------------------RM----CKEITDDGFLYLLKNCPKLKKIGFIQCPKLTERS 257          
BLAST of Ggra2832.t2 vs. uniprot
Match: A0A482T2G5 (C2 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T2G5_9ARCH)

HSP 1 Score: 61.6 bits (148), Expect = 3.130e-6
Identity = 37/138 (26.81%), Postives = 74/138 (53.62%), Query Frame = 0
Query:  183 LETLSQRCTQLQTLCISAAPNITDHGVHSVCSSALARSLRSMHLADCGVTDDALVAIATSCHALHELNLCCCSGVSTWGVRAIAEGLGSFLQRLSIVHCEQVDDEAFVSIADNCDELRMLSIGSLPNVTDEALLALFD 320
            ++ L + C +L +L + A P I D G+    S    +SL+S+HL +C +T++++  I   C+ L    L CC+ +S  G+  + +   + L  + I H   V D++ V++      L  L++ +   +TD+++ AL++
Sbjct:  112 IKALLRSCAKLLSLRLVAVPWIDD-GMIEQLSVRYHKSLKSIHLENCTLTNNSIFQIGRRCNQLQNFTLVCCTRISDTGLLELTKN--TRLSYIHIAHNYNVTDKSLVALLGAAKNLCYLNLANCVKLTDQSISALYE 246          
BLAST of Ggra2832.t2 vs. uniprot
Match: uncharacterized protein LOC122847729 n=1 Tax=Aphidius gifuensis TaxID=684658 RepID=UPI001CDD509D (uncharacterized protein LOC122847729 n=1 Tax=Aphidius gifuensis TaxID=684658 RepID=UPI001CDD509D)

HSP 1 Score: 60.5 bits (145), Expect = 4.970e-6
Identity = 49/189 (25.93%), Postives = 94/189 (49.74%), Query Frame = 0
Query:  166 SLRRLQLHACEQLSDEMLETLSQRCTQLQTLCISAAPNITDHGVHSVCSSALARSLRSMHLADCGVTDDALVAIATSCHALHELNLCCC--------SGVSTWGVRAIAEGLGSFLQRLSIVHCEQVDDEAFVSIADNCDELRMLSI-GSLPNVTDEALLALFDVARLGALQLSVLYVENCPAVSQLGI 345
            +L  L+L   E LSD + +T+ + C  L+ LC++   +     V  V       +L  + + D G++++A++AI+ +C  L  L L  C          +S+  V +    L  +L+ LS++  E ++D   ++IA+NC  L+ L I G   ++T+ AL+ L  +  L  L++S   + +   +   G+
Sbjct:  313 NLEYLRLSCYEVLSD-LADTIVKYCKNLKHLCMNPICHFIKTNV--VKKLTKLENLEILQMNDYGLSEEAIIAISNNCKKLKHLELDNCYLVPSIDSEELSSPSVLSELSKL-QYLEHLSLICAENIEDNTIIAIANNCKNLKSLDICGISDDITETALVTLTKLENLEILRVSFCNISDSFIIKLKGL 497          
BLAST of Ggra2832.t2 vs. uniprot
Match: EIN3-binding F-box protein 2-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929FCE5 (EIN3-binding F-box protein 2-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929FCE5)

HSP 1 Score: 59.7 bits (143), Expect = 8.740e-6
Identity = 49/186 (26.34%), Postives = 81/186 (43.55%), Query Frame = 0
Query:  165 PSLRRLQLHACEQLSDEMLETLSQRCTQLQTLCISAAPNITDHGVHSVCSSALARSLRSMHLADCGVTDDALVAIATSCH---ALHELNLCCCSGVSTWGVRAIAEGLGSFLQRLSIVHCEQVDDEAFVSIADNCDELRMLSIGSLPNVTDEALLALFDVARLGALQLSVLYVENCPAVSQLGIAA 347
            P L  ++L  C+ + +  L  + + C + + + +    N                          G+TD A+ A   +     ++  L+L     +S W V A+    G  L+RLS+V C++V +EA   I + C +L  L + SL  V DEAL  +   A   AL+L  L +  C  V+  G+AA
Sbjct:  394 PVLFSMKLKKCKSIGEPFLAWIGESCKEAKKIAMVGMSN--------------------------GITDTAMCAFLKAMGGGGSVKSLDLSGSGRISDWSVAAVTAAFGRTLERLSLVGCKRVSEEALGVIGERCGKLEDLDL-SLCAVGDEALRRM---ASSRALRLKTLALAGCGGVTDEGLAA 549          
The following BLAST results are available for this feature:
BLAST of Ggra2832.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A077WAD47.610e-730.46F-box domain-containing protein n=1 Tax=Lichtheimi... [more]
A0A814MC469.730e-725.00Hypothetical protein n=4 Tax=Adineta steineri TaxI... [more]
A0A482T2G53.130e-626.81C2 domain-containing protein n=1 Tax=archaeon TaxI... [more]
uncharacterized protein LOC122847729 n=1 Tax=Aphidius gifuensis TaxID=684658 RepID=UPI001CDD509D4.970e-625.93uncharacterized protein LOC122847729 n=1 Tax=Aphid... [more]
EIN3-binding F-box protein 2-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929FCE58.740e-626.34EIN3-binding F-box protein 2-like n=1 Tax=Dioscore... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 296..321
e-value: 0.5
score: 19.4
coord: 270..295
e-value: 0.0075
score: 25.5
coord: 190..215
e-value: 0.008
score: 25.4
coord: 164..189
e-value: 15.0
score: 13.1
coord: 218..242
e-value: 16.0
score: 13.0
coord: 243..268
e-value: 0.026
score: 23.7
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 43..265
e-value: 1.2E-30
score: 108.3
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 266..349
e-value: 2.3E-9
score: 38.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 411..431
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 466..491
NoneNo IPR availablePANTHERPTHR13382:SF25OS03G0633100 PROTEINcoord: 65..348
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 65..348
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 137..508
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 117..136
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..116
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 55..341

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000123_piloncontigtig00000123_pilon:410422..411948 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2832.t2Ggra2832.t2Gracilaria gracilis GNS1m malemRNAtig00000123_pilon 410422..411948 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2832.t2 ID=Ggra2832.t2|Name=Ggra2832.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=509bp
MKRPLLHSLPVDALHAVLAHLPVNDVLRISAAFPDLSAALAAHLARSTHT
PSLSNVSCSFPSLLPHLTRLTVRQLPSDLHALRAANSLRHLTLSMDTAVS
EPHLRQLLSRAPQLRSLAAYCTPLPHAFFALLALYARSLHSLRLSCVSRV
SCSSRYVSSFCIGAPSLRRLQLHACEQLSDEMLETLSQRCTQLQTLCISA
APNITDHGVHSVCSSALARSLRSMHLADCGVTDDALVAIATSCHALHELN
LCCCSGVSTWGVRAIAEGLGSFLQRLSIVHCEQVDDEAFVSIADNCDELR
MLSIGSLPNVTDEALLALFDVARLGALQLSVLYVENCPAVSQLGIAAASG
VLDGGDLHAQQWYGDRAQCGEEECGREVDDSDEDECGREVDDSDEDELVW
GCEGTHAKVKTKSGASAKRKRGRPVDSDPHVQERRFESRLCELYAPDTTV
RTEVLRRVKERRGGTLTVRVREEGDASRDDGSEEEEEEDNGEGGCEWSWC
CGAVQVCV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR032675LRR_dom_sf