Ggra2832.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2832.t2
Unique Name	Ggra2832.t2
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	509

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000123_pilon	contig	tig00000123_pilon:410422..411948 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	29760.VIT_05s0020g02400.t01
PFAMs	F-box-like,LRR_6
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K10268
Evalue	3.46e-10
EggNOG OGs	KOG1947@1\|root,KOG1947@2759\|Eukaryota,37R0Y@33090\|Viridiplantae,3GADT@35493\|Streptophyta
Description	F-box LRR-repeat protein
COG category	S
BRITE	ko00000,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2832	Ggra2832	Gracilaria gracilis GNS1m male	gene	tig00000123_pilon 410422..411948 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2832.t2.stop1	Ggra2832.t2.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000123_pilon 410422..410424 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2832.t2.CDS1	Ggra2832.t2.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000123_pilon 410422..411948 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2832.t2.exon1	Ggra2832.t2.exon1	Gracilaria gracilis GNS1m male	exon	tig00000123_pilon 410422..411948 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2832.t2.start1	Ggra2832.t2.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000123_pilon 411946..411948 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2832.t2	Ggra2832.t2	Gracilaria gracilis GNS1m male	polypeptide	tig00000123_pilon 410422..411948 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000123_pilon:410422..411948-
coding sequence from alignment at tig00000123_pilon:410422..411948-

mRNA sequence

>Ggra2832.t2 ID=Ggra2832.t2|Name=Ggra2832.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=509bp
MKRPLLHSLPVDALHAVLAHLPVNDVLRISAAFPDLSAALAAHLARSTHT
PSLSNVSCSFPSLLPHLTRLTVRQLPSDLHALRAANSLRHLTLSMDTAVS
EPHLRQLLSRAPQLRSLAAYCTPLPHAFFALLALYARSLHSLRLSCVSRV
SCSSRYVSSFCIGAPSLRRLQLHACEQLSDEMLETLSQRCTQLQTLCISA
APNITDHGVHSVCSSALARSLRSMHLADCGVTDDALVAIATSCHALHELN
LCCCSGVSTWGVRAIAEGLGSFLQRLSIVHCEQVDDEAFVSIADNCDELR
MLSIGSLPNVTDEALLALFDVARLGALQLSVLYVENCPAVSQLGIAAASG
VLDGGDLHAQQWYGDRAQCGEEECGREVDDSDEDECGREVDDSDEDELVW
GCEGTHAKVKTKSGASAKRKRGRPVDSDPHVQERRFESRLCELYAPDTTV
RTEVLRRVKERRGGTLTVRVREEGDASRDDGSEEEEEEDNGEGGCEWSWC
CGAVQVCV*

spliced messenger RNA

>Ggra2832.t2 ID=Ggra2832.t2|Name=Ggra2832.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1527bp|location=Sequence derived from alignment at tig00000123_pilon:410422..411948- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAGGCCCCTCCTCCACTCGCTCCCCGTCGACGCGCTGCACGCCGT
GCTCGCGCACCTGCCCGTGAATGACGTGCTGCGCATAAGTGCCGCCTTCC
CCGATCTATCCGCCGCGCTGGCCGCCCATCTGGCGCGCTCCACGCACACG
CCGTCGCTGTCGAACGTGTCGTGCTCCTTCCCGTCGCTGCTTCCGCATCT
AACCCGTCTAACAGTACGTCAGCTGCCGTCCGACCTACACGCGCTGCGAG
CCGCCAACTCGCTGCGCCACCTCACGCTCAGTATGGACACAGCCGTCTCC
GAGCCCCATTTGCGCCAATTGCTGTCGCGCGCACCGCAACTGCGCTCCTT
GGCGGCGTACTGCACGCCGTTACCGCACGCCTTTTTCGCGCTGCTTGCGC
TGTACGCACGCTCGTTGCACTCACTTCGTCTCAGCTGCGTGTCACGTGTC
AGCTGCTCGAGTCGGTATGTGAGCTCCTTTTGCATCGGCGCGCCGTCGTT
ACGACGTCTGCAACTGCACGCATGCGAGCAATTGAGCGATGAGATGCTGG
AGACGTTGTCGCAACGGTGTACACAACTACAAACTTTATGCATCAGCGCG
GCTCCTAACATAACCGATCACGGCGTGCACAGCGTGTGCTCGTCAGCGCT
GGCGCGCTCGCTACGAAGCATGCACCTGGCGGATTGCGGCGTGACGGACG
ATGCGCTGGTGGCGATTGCCACCAGCTGTCATGCGTTGCATGAGCTCAAT
CTGTGTTGCTGTAGTGGGGTGTCCACGTGGGGGGTACGCGCCATTGCGGA
GGGATTGGGCTCGTTTCTGCAACGGTTGAGCATCGTGCACTGCGAACAGG
TGGACGATGAGGCGTTTGTGTCCATTGCGGACAATTGCGACGAGCTGCGG
ATGCTGAGCATAGGCAGCTTGCCCAACGTGACGGATGAGGCGTTGCTAGC
GCTTTTCGACGTGGCACGGCTCGGCGCGCTGCAGCTGAGCGTGCTGTATG
TGGAGAACTGCCCGGCGGTTTCGCAGCTGGGCATTGCGGCCGCCAGTGGC
GTGCTGGATGGTGGCGACTTGCACGCACAGCAGTGGTACGGCGATAGGGC
GCAGTGCGGCGAGGAAGAATGTGGGCGTGAGGTGGACGACAGCGATGAGG
ACGAATGTGGGCGTGAGGTGGACGACAGCGATGAGGACGAATTGGTGTGG
GGTTGCGAAGGTACGCACGCCAAGGTGAAGACAAAGTCGGGCGCGAGCGC
AAAGCGTAAACGCGGGCGACCGGTGGACAGCGATCCGCACGTGCAGGAGA
GGAGGTTTGAGTCGCGGCTGTGCGAGCTGTATGCGCCGGATACGACGGTG
AGGACGGAGGTGTTGAGACGGGTAAAGGAGCGACGTGGCGGCACGCTGAC
GGTGCGCGTGAGGGAGGAGGGGGACGCGTCGCGCGACGACGGCTCGGAGG
AGGAGGAGGAGGAGGACAACGGTGAAGGCGGGTGCGAGTGGTCGTGGTGC
TGTGGGGCGGTGCAAGTGTGCGTTTAG

protein sequence of Ggra2832.t2

>Ggra2832.t2 ID=Ggra2832.t2|Name=Ggra2832.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=509bp
MKRPLLHSLPVDALHAVLAHLPVNDVLRISAAFPDLSAALAAHLARSTHT
PSLSNVSCSFPSLLPHLTRLTVRQLPSDLHALRAANSLRHLTLSMDTAVS
EPHLRQLLSRAPQLRSLAAYCTPLPHAFFALLALYARSLHSLRLSCVSRV
SCSSRYVSSFCIGAPSLRRLQLHACEQLSDEMLETLSQRCTQLQTLCISA
APNITDHGVHSVCSSALARSLRSMHLADCGVTDDALVAIATSCHALHELN
LCCCSGVSTWGVRAIAEGLGSFLQRLSIVHCEQVDDEAFVSIADNCDELR
MLSIGSLPNVTDEALLALFDVARLGALQLSVLYVENCPAVSQLGIAAASG
VLDGGDLHAQQWYGDRAQCGEEECGREVDDSDEDECGREVDDSDEDELVW
GCEGTHAKVKTKSGASAKRKRGRPVDSDPHVQERRFESRLCELYAPDTTV
RTEVLRRVKERRGGTLTVRVREEGDASRDDGSEEEEEEDNGEGGCEWSWC
CGAVQVCV*

mRNA from alignment at tig00000123_pilon:410422..411948-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2832.t2 ID=Ggra2832.t2|Name=Ggra2832.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1527bp|location=Sequence derived from alignment at tig00000123_pilon:410422..411948- (Gracilaria gracilis GNS1m male)
ATGAAGAGGCCCCTCCTCCACTCGCTCCCCGTCGACGCGCTGCACGCCGT
GCTCGCGCACCTGCCCGTGAATGACGTGCTGCGCATAAGTGCCGCCTTCC
CCGATCTATCCGCCGCGCTGGCCGCCCATCTGGCGCGCTCCACGCACACG
CCGTCGCTGTCGAACGTGTCGTGCTCCTTCCCGTCGCTGCTTCCGCATCT
AACCCGTCTAACAGTACGTCAGCTGCCGTCCGACCTACACGCGCTGCGAG
CCGCCAACTCGCTGCGCCACCTCACGCTCAGTATGGACACAGCCGTCTCC
GAGCCCCATTTGCGCCAATTGCTGTCGCGCGCACCGCAACTGCGCTCCTT
GGCGGCGTACTGCACGCCGTTACCGCACGCCTTTTTCGCGCTGCTTGCGC
TGTACGCACGCTCGTTGCACTCACTTCGTCTCAGCTGCGTGTCACGTGTC
AGCTGCTCGAGTCGGTATGTGAGCTCCTTTTGCATCGGCGCGCCGTCGTT
ACGACGTCTGCAACTGCACGCATGCGAGCAATTGAGCGATGAGATGCTGG
AGACGTTGTCGCAACGGTGTACACAACTACAAACTTTATGCATCAGCGCG
GCTCCTAACATAACCGATCACGGCGTGCACAGCGTGTGCTCGTCAGCGCT
GGCGCGCTCGCTACGAAGCATGCACCTGGCGGATTGCGGCGTGACGGACG
ATGCGCTGGTGGCGATTGCCACCAGCTGTCATGCGTTGCATGAGCTCAAT
CTGTGTTGCTGTAGTGGGGTGTCCACGTGGGGGGTACGCGCCATTGCGGA
GGGATTGGGCTCGTTTCTGCAACGGTTGAGCATCGTGCACTGCGAACAGG
TGGACGATGAGGCGTTTGTGTCCATTGCGGACAATTGCGACGAGCTGCGG
ATGCTGAGCATAGGCAGCTTGCCCAACGTGACGGATGAGGCGTTGCTAGC
GCTTTTCGACGTGGCACGGCTCGGCGCGCTGCAGCTGAGCGTGCTGTATG
TGGAGAACTGCCCGGCGGTTTCGCAGCTGGGCATTGCGGCCGCCAGTGGC
GTGCTGGATGGTGGCGACTTGCACGCACAGCAGTGGTACGGCGATAGGGC
GCAGTGCGGCGAGGAAGAATGTGGGCGTGAGGTGGACGACAGCGATGAGG
ACGAATGTGGGCGTGAGGTGGACGACAGCGATGAGGACGAATTGGTGTGG
GGTTGCGAAGGTACGCACGCCAAGGTGAAGACAAAGTCGGGCGCGAGCGC
AAAGCGTAAACGCGGGCGACCGGTGGACAGCGATCCGCACGTGCAGGAGA
GGAGGTTTGAGTCGCGGCTGTGCGAGCTGTATGCGCCGGATACGACGGTG
AGGACGGAGGTGTTGAGACGGGTAAAGGAGCGACGTGGCGGCACGCTGAC
GGTGCGCGTGAGGGAGGAGGGGGACGCGTCGCGCGACGACGGCTCGGAGG
AGGAGGAGGAGGAGGACAACGGTGAAGGCGGGTGCGAGTGGTCGTGGTGC
TGTGGGGCGGTGCAAGTGTGCGTTTAG

Coding sequence (CDS) from alignment at tig00000123_pilon:410422..411948-

>Ggra2832.t2 ID=Ggra2832.t2|Name=Ggra2832.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1527bp|location=Sequence derived from alignment at tig00000123_pilon:410422..411948- (Gracilaria gracilis GNS1m male)
ATGAAGAGGCCCCTCCTCCACTCGCTCCCCGTCGACGCGCTGCACGCCGT
GCTCGCGCACCTGCCCGTGAATGACGTGCTGCGCATAAGTGCCGCCTTCC
CCGATCTATCCGCCGCGCTGGCCGCCCATCTGGCGCGCTCCACGCACACG
CCGTCGCTGTCGAACGTGTCGTGCTCCTTCCCGTCGCTGCTTCCGCATCT
AACCCGTCTAACAGTACGTCAGCTGCCGTCCGACCTACACGCGCTGCGAG
CCGCCAACTCGCTGCGCCACCTCACGCTCAGTATGGACACAGCCGTCTCC
GAGCCCCATTTGCGCCAATTGCTGTCGCGCGCACCGCAACTGCGCTCCTT
GGCGGCGTACTGCACGCCGTTACCGCACGCCTTTTTCGCGCTGCTTGCGC
TGTACGCACGCTCGTTGCACTCACTTCGTCTCAGCTGCGTGTCACGTGTC
AGCTGCTCGAGTCGGTATGTGAGCTCCTTTTGCATCGGCGCGCCGTCGTT
ACGACGTCTGCAACTGCACGCATGCGAGCAATTGAGCGATGAGATGCTGG
AGACGTTGTCGCAACGGTGTACACAACTACAAACTTTATGCATCAGCGCG
GCTCCTAACATAACCGATCACGGCGTGCACAGCGTGTGCTCGTCAGCGCT
GGCGCGCTCGCTACGAAGCATGCACCTGGCGGATTGCGGCGTGACGGACG
ATGCGCTGGTGGCGATTGCCACCAGCTGTCATGCGTTGCATGAGCTCAAT
CTGTGTTGCTGTAGTGGGGTGTCCACGTGGGGGGTACGCGCCATTGCGGA
GGGATTGGGCTCGTTTCTGCAACGGTTGAGCATCGTGCACTGCGAACAGG
TGGACGATGAGGCGTTTGTGTCCATTGCGGACAATTGCGACGAGCTGCGG
ATGCTGAGCATAGGCAGCTTGCCCAACGTGACGGATGAGGCGTTGCTAGC
GCTTTTCGACGTGGCACGGCTCGGCGCGCTGCAGCTGAGCGTGCTGTATG
TGGAGAACTGCCCGGCGGTTTCGCAGCTGGGCATTGCGGCCGCCAGTGGC
GTGCTGGATGGTGGCGACTTGCACGCACAGCAGTGGTACGGCGATAGGGC
GCAGTGCGGCGAGGAAGAATGTGGGCGTGAGGTGGACGACAGCGATGAGG
ACGAATGTGGGCGTGAGGTGGACGACAGCGATGAGGACGAATTGGTGTGG
GGTTGCGAAGGTACGCACGCCAAGGTGAAGACAAAGTCGGGCGCGAGCGC
AAAGCGTAAACGCGGGCGACCGGTGGACAGCGATCCGCACGTGCAGGAGA
GGAGGTTTGAGTCGCGGCTGTGCGAGCTGTATGCGCCGGATACGACGGTG
AGGACGGAGGTGTTGAGACGGGTAAAGGAGCGACGTGGCGGCACGCTGAC
GGTGCGCGTGAGGGAGGAGGGGGACGCGTCGCGCGACGACGGCTCGGAGG
AGGAGGAGGAGGAGGACAACGGTGAAGGCGGGTGCGAGTGGTCGTGGTGC
TGTGGGGCGGTGCAAGTGTGCGTTTAG