Ggra2810.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2810.t1
Unique NameGgra2810.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length275
Homology
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BLAST of Ggra2810.t1 vs. uniprot
Match: A0A2V3IZ05 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZ05_9FLOR)

HSP 1 Score: 270 bits (691), Expect = 1.470e-87
Identity = 134/244 (54.92%), Postives = 166/244 (68.03%), Query Frame = 0 
Query:   33 KLYATALYVPGSPHLEPEPQTVPAASYSVYLHCADHQVRVAQPLAASVQTYRTASLKALLCALQLCNCLCLQHVHVVCDDDVLVNLFHAHLSSTQTDDLE--PEQLSSSENMAIWRAIQVTADAFMVRGAILNVIRNDDADGTHIARQIARSAITMHQYCSRCESNYGPLRTPHNCDIDQQPPLKRTGSLVEGTDDYGRARIVAAVCPKCSATFEHLHELERHVECDCPEVLEEWFAHTKIVKN 274
            +LYA A + P + H  P  QTV AA+Y+VYLH ++H +R+AQPL    QTYRTA L+++L AL+L NCLCL +V +  DD  LVNLFH        D +   P   +S E+MA+WRAI   AD F  RGA L +I+          R +  SA+  H+YCS CE NYGPL TPH+C    QP LKRTGSLVE TD YGR +IV AVCP+CSA F+HLH+LERHVE DCPE+L+EWFAHTKIVK+
Sbjct:   25 ELYAAAFFRPPTAHRAPSKQTVAAATYAVYLHTSEHHLRLAQPLVTPHQTYRTAVLQSVLSALELANCLCLPYVRLCVDDAQLVNLFHVERPRRLADTVRSAPADFASPEDMALWRAILSLADTFSERGATLQLIQAQSCQSLRTVRSLCESAVHQHEYCSNCECNYGPLFTPHDCGPAYQPSLKRTGSLVERTDAYGRPQIVEAVCPRCSAKFQHLHQLERHVESDCPELLDEWFAHTKIVKD 268
The following BLAST results are available for this feature:
BLAST of Ggra2810.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IZ051.470e-8754.92Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 63..119
e-value: 9.2E-5
score: 22.3
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 36..186
e-value: 3.3E-6
score: 29.0
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 39..171

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000123_piloncontigtig00000123_pilon:351931..352755 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2810.t1Ggra2810.t1Gracilaria gracilis GNS1m malemRNAtig00000123_pilon 351931..352755 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2810.t1 ID=Ggra2810.t1|Name=Ggra2810.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=275bp
MPTLHDNKELPNDVSAFCPLEDCGDDPNFLPTKLYATALYVPGSPHLEPE
PQTVPAASYSVYLHCADHQVRVAQPLAASVQTYRTASLKALLCALQLCNC
LCLQHVHVVCDDDVLVNLFHAHLSSTQTDDLEPEQLSSSENMAIWRAIQV
TADAFMVRGAILNVIRNDDADGTHIARQIARSAITMHQYCSRCESNYGPL
RTPHNCDIDQQPPLKRTGSLVEGTDDYGRARIVAAVCPKCSATFEHLHEL
ERHVECDCPEVLEEWFAHTKIVKN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002156RNaseH_domain
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf