Ggra2810.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2810.t1
Unique NameGgra2810.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length275
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000123_piloncontigtig00000123_pilon:351931..352755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2810Ggra2810Gracilaria gracilis GNS1m malegenetig00000123_pilon 351931..352755 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2810.t1.start1Ggra2810.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000123_pilon 351931..351933 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2810.t1.CDS1Ggra2810.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000123_pilon 351931..352755 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2810.t1.exon1Ggra2810.t1.exon1Gracilaria gracilis GNS1m maleexontig00000123_pilon 351931..352755 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2810.t1.stop1Ggra2810.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000123_pilon 352753..352755 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2810.t1Ggra2810.t1Gracilaria gracilis GNS1m malepolypeptidetig00000123_pilon 351931..352755 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2810.t1 ID=Ggra2810.t1|Name=Ggra2810.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=275bp
MPTLHDNKELPNDVSAFCPLEDCGDDPNFLPTKLYATALYVPGSPHLEPE
PQTVPAASYSVYLHCADHQVRVAQPLAASVQTYRTASLKALLCALQLCNC
LCLQHVHVVCDDDVLVNLFHAHLSSTQTDDLEPEQLSSSENMAIWRAIQV
TADAFMVRGAILNVIRNDDADGTHIARQIARSAITMHQYCSRCESNYGPL
RTPHNCDIDQQPPLKRTGSLVEGTDDYGRARIVAAVCPKCSATFEHLHEL
ERHVECDCPEVLEEWFAHTKIVKN*
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spliced messenger RNA

>Ggra2810.t1 ID=Ggra2810.t1|Name=Ggra2810.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=825bp|location=Sequence derived from alignment at tig00000123_pilon:351931..352755+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTACGCTCCACGACAACAAAGAGCTACCCAACGACGTTTCCGCGTT
TTGCCCTCTTGAGGACTGCGGAGATGATCCAAACTTTCTACCAACGAAGT
TGTATGCGACCGCCTTGTACGTTCCAGGTTCACCCCACCTAGAACCGGAG
CCTCAAACTGTTCCTGCCGCATCTTATTCAGTTTACCTTCACTGTGCCGA
CCATCAAGTACGGGTGGCTCAACCACTCGCGGCTTCGGTTCAGACTTATC
GCACGGCGAGTTTGAAAGCCTTGCTATGCGCGCTGCAACTATGTAACTGT
TTGTGTCTACAACACGTACATGTCGTTTGTGATGATGATGTACTTGTGAA
TTTGTTCCATGCACACCTATCATCAACACAAACAGATGACCTCGAACCTG
AACAGCTGTCATCCTCGGAAAACATGGCTATATGGAGAGCGATTCAAGTA
ACTGCTGATGCGTTCATGGTCAGAGGAGCCATTCTAAATGTGATCCGAAA
CGATGATGCTGATGGCACGCATATTGCAAGACAAATCGCACGTTCTGCTA
TCACAATGCATCAATACTGCTCACGATGTGAGTCCAACTATGGTCCTCTA
CGCACCCCTCATAATTGCGATATCGATCAACAGCCCCCTCTGAAGCGCAC
AGGTTCTCTTGTTGAAGGTACTGATGACTATGGTCGTGCTCGGATTGTGG
CCGCGGTGTGCCCCAAATGCAGTGCGACATTTGAACATTTGCATGAGCTG
GAGCGACACGTTGAATGTGATTGCCCTGAGGTGTTGGAGGAATGGTTTGC
ACATACCAAGATTGTGAAGAACTAG
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protein sequence of Ggra2810.t1

>Ggra2810.t1 ID=Ggra2810.t1|Name=Ggra2810.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=275bp
MPTLHDNKELPNDVSAFCPLEDCGDDPNFLPTKLYATALYVPGSPHLEPE
PQTVPAASYSVYLHCADHQVRVAQPLAASVQTYRTASLKALLCALQLCNC
LCLQHVHVVCDDDVLVNLFHAHLSSTQTDDLEPEQLSSSENMAIWRAIQV
TADAFMVRGAILNVIRNDDADGTHIARQIARSAITMHQYCSRCESNYGPL
RTPHNCDIDQQPPLKRTGSLVEGTDDYGRARIVAAVCPKCSATFEHLHEL
ERHVECDCPEVLEEWFAHTKIVKN*
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mRNA from alignment at tig00000123_pilon:351931..352755+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2810.t1 ID=Ggra2810.t1|Name=Ggra2810.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=825bp|location=Sequence derived from alignment at tig00000123_pilon:351931..352755+ (Gracilaria gracilis GNS1m male)
ATGCCTACGCTCCACGACAACAAAGAGCTACCCAACGACGTTTCCGCGTT
TTGCCCTCTTGAGGACTGCGGAGATGATCCAAACTTTCTACCAACGAAGT
TGTATGCGACCGCCTTGTACGTTCCAGGTTCACCCCACCTAGAACCGGAG
CCTCAAACTGTTCCTGCCGCATCTTATTCAGTTTACCTTCACTGTGCCGA
CCATCAAGTACGGGTGGCTCAACCACTCGCGGCTTCGGTTCAGACTTATC
GCACGGCGAGTTTGAAAGCCTTGCTATGCGCGCTGCAACTATGTAACTGT
TTGTGTCTACAACACGTACATGTCGTTTGTGATGATGATGTACTTGTGAA
TTTGTTCCATGCACACCTATCATCAACACAAACAGATGACCTCGAACCTG
AACAGCTGTCATCCTCGGAAAACATGGCTATATGGAGAGCGATTCAAGTA
ACTGCTGATGCGTTCATGGTCAGAGGAGCCATTCTAAATGTGATCCGAAA
CGATGATGCTGATGGCACGCATATTGCAAGACAAATCGCACGTTCTGCTA
TCACAATGCATCAATACTGCTCACGATGTGAGTCCAACTATGGTCCTCTA
CGCACCCCTCATAATTGCGATATCGATCAACAGCCCCCTCTGAAGCGCAC
AGGTTCTCTTGTTGAAGGTACTGATGACTATGGTCGTGCTCGGATTGTGG
CCGCGGTGTGCCCCAAATGCAGTGCGACATTTGAACATTTGCATGAGCTG
GAGCGACACGTTGAATGTGATTGCCCTGAGGTGTTGGAGGAATGGTTTGC
ACATACCAAGATTGTGAAGAACTAG
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Coding sequence (CDS) from alignment at tig00000123_pilon:351931..352755+

>Ggra2810.t1 ID=Ggra2810.t1|Name=Ggra2810.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=825bp|location=Sequence derived from alignment at tig00000123_pilon:351931..352755+ (Gracilaria gracilis GNS1m male)
ATGCCTACGCTCCACGACAACAAAGAGCTACCCAACGACGTTTCCGCGTT
TTGCCCTCTTGAGGACTGCGGAGATGATCCAAACTTTCTACCAACGAAGT
TGTATGCGACCGCCTTGTACGTTCCAGGTTCACCCCACCTAGAACCGGAG
CCTCAAACTGTTCCTGCCGCATCTTATTCAGTTTACCTTCACTGTGCCGA
CCATCAAGTACGGGTGGCTCAACCACTCGCGGCTTCGGTTCAGACTTATC
GCACGGCGAGTTTGAAAGCCTTGCTATGCGCGCTGCAACTATGTAACTGT
TTGTGTCTACAACACGTACATGTCGTTTGTGATGATGATGTACTTGTGAA
TTTGTTCCATGCACACCTATCATCAACACAAACAGATGACCTCGAACCTG
AACAGCTGTCATCCTCGGAAAACATGGCTATATGGAGAGCGATTCAAGTA
ACTGCTGATGCGTTCATGGTCAGAGGAGCCATTCTAAATGTGATCCGAAA
CGATGATGCTGATGGCACGCATATTGCAAGACAAATCGCACGTTCTGCTA
TCACAATGCATCAATACTGCTCACGATGTGAGTCCAACTATGGTCCTCTA
CGCACCCCTCATAATTGCGATATCGATCAACAGCCCCCTCTGAAGCGCAC
AGGTTCTCTTGTTGAAGGTACTGATGACTATGGTCGTGCTCGGATTGTGG
CCGCGGTGTGCCCCAAATGCAGTGCGACATTTGAACATTTGCATGAGCTG
GAGCGACACGTTGAATGTGATTGCCCTGAGGTGTTGGAGGAATGGTTTGC
ACATACCAAGATTGTGAAGAACTAG
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