Ggra2674.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2674.t1
Unique NameGgra2674.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length140
Homology
BLAST of Ggra2674.t1 vs. uniprot
Match: A0A2V3IRH2 (60S ribosomal protein L34-A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRH2_9FLOR)

HSP 1 Score: 187 bits (476), Expect = 6.350e-59
Identity = 93/103 (90.29%), Postives = 101/103 (98.06%), Query Frame = 0
Query:    1 MPDSRVTLRRSSPYKTRSNKFKKVRTPGGKLTIQYLGKLPSVPKCGDTGRPLFGVAVARPKELKRMSKRRKTVSRSYGGVLSGYAVRNRIIRAFLLEEQKIVK 103
            MPD+RVTLR+SSPY+TRSNKF+K+RTPGGKLTIQY+ KLPSVPKCGDTGRPLFGVAVARPKEL+RMSKRRK+VSRSYGGVLS YAVRNRIIRAFLLEEQKIVK
Sbjct:    1 MPDARVTLRKSSPYRTRSNKFRKLRTPGGKLTIQYVRKLPSVPKCGDTGRPLFGVAVARPKELQRMSKRRKSVSRSYGGVLSAYAVRNRIIRAFLLEEQKIVK 103          
BLAST of Ggra2674.t1 vs. uniprot
Match: R7Q857 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q857_CHOCR)

HSP 1 Score: 186 bits (471), Expect = 1.690e-58
Identity = 93/103 (90.29%), Postives = 98/103 (95.15%), Query Frame = 0
Query:    1 MPDSRVTLRRSSPYKTRSNKFKKVRTPGGKLTIQYLGKLPSVPKCGDTGRPLFGVAVARPKELKRMSKRRKTVSRSYGGVLSGYAVRNRIIRAFLLEEQKIVK 103
            MPD+RVTLRR SP+ TRSNKFKKVRTPGGKLTIQYL KLPS PKCGDTGRPLFGVAVARPKELKRMSKR+K+VSR YGGVLSGYAVRNRI+RAFLLEEQKIVK
Sbjct:    1 MPDARVTLRRKSPFCTRSNKFKKVRTPGGKLTIQYLKKLPSTPKCGDTGRPLFGVAVARPKELKRMSKRQKSVSRCYGGVLSGYAVRNRIVRAFLLEEQKIVK 103          
BLAST of Ggra2674.t1 vs. uniprot
Match: M2Y4N1 (60S ribosomal protein L34e n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y4N1_GALSU)

HSP 1 Score: 134 bits (337), Expect = 3.820e-38
Identity = 65/103 (63.11%), Postives = 79/103 (76.70%), Query Frame = 0
Query:    1 MPDSRVTLRRSSPYKTRSNKFKKVRTPGGKLTIQYLGKLPSVPKCGDTGRPLFGVAVARPKELKRMSKRRKTVSRSYGGVLSGYAVRNRIIRAFLLEEQKIVK 103
            MPD RV LRR  PY TRSN+ +KVRTPGGKL +QY GK    P+CGDTG+PL G+   RP E  R+SKR+K V+R+YGG L   AVR+RI+RAFL+EEQK+VK
Sbjct:    1 MPDKRVVLRRRHPYNTRSNRIRKVRTPGGKLVVQYPGKKGKQPRCGDTGKPLQGIPALRPIEYSRISKRQKKVNRAYGGNLCAQAVRDRILRAFLIEEQKLVK 103          
BLAST of Ggra2674.t1 vs. uniprot
Match: A0A7S1TDA2 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TDA2_9RHOD)

HSP 1 Score: 133 bits (335), Expect = 7.240e-38
Identity = 67/103 (65.05%), Postives = 83/103 (80.58%), Query Frame = 0
Query:    1 MPDSRVTLRRSSPYKTRSNKFKKVRTPGGKLTIQYLGKLPSVPKCGDTGRPLFGVAVARPKELKRMSKRRKTVSRSYGGVLSGYAVRNRIIRAFLLEEQKIVK 103
            M DSRVT RR SPY T+SN+ KK++TPGGKLT+QYL K  S P+CG+TG  L GVA+ RPK+  RMSK +K+VSR+YGG L   AVR+RI+RAFL+EEQ+IVK
Sbjct:    1 MADSRVTRRRRSPYATKSNRIKKIKTPGGKLTVQYLKKKASRPRCGETGVILQGVAMGRPKQYMRMSKPKKSVSRAYGGNLCARAVRDRIVRAFLIEEQRIVK 103          
BLAST of Ggra2674.t1 vs. uniprot
Match: A0A1X6NTK0 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NTK0_PORUM)

HSP 1 Score: 130 bits (326), Expect = 1.790e-36
Identity = 64/103 (62.14%), Postives = 81/103 (78.64%), Query Frame = 0
Query:    1 MPDSRVTLRRSSPYKTRSNKFKKVRTPGGKLTIQYLGKLPSVPKCGDTGRPLFGVAVARPKELKRMSKRRKTVSRSYGGVLSGYAVRNRIIRAFLLEEQKIVK 103
            MPD+RVTLRR +PY T+SN+F+KV+TPGGKL +QY+ K  +  +CGDT   L G+++ RPK+  RMSK +KTV+R YGG L   AVR RIIRAFL+EEQKIVK
Sbjct:    1 MPDARVTLRRRNPYATKSNRFRKVKTPGGKLVVQYIKKQGTPTRCGDTHTILNGISIGRPKDYMRMSKPKKTVTRVYGGNLCAKAVRERIIRAFLIEEQKIVK 103          
BLAST of Ggra2674.t1 vs. uniprot
Match: A0A7J7ILW8 (60S ribosomal protein L34 n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7ILW8_9RHOD)

HSP 1 Score: 129 bits (323), Expect = 1.220e-35
Identity = 64/103 (62.14%), Postives = 78/103 (75.73%), Query Frame = 0
Query:    1 MPDSRVTLRRSSPYKTRSNKFKKVRTPGGKLTIQYLGKLPSVPKCGDTGRPLFGVAVARPKELKRMSKRRKTVSRSYGGVLSGYAVRNRIIRAFLLEEQKIVK 103
            MPD R+TLR+  PY TRSNK +KV+TPGG LT+ YL K    P+CGDTG  L G+ V RP+E  R+SK +K+VSR+YGG L G AVR+RI RAFL+EE KIVK
Sbjct:    1 MPDKRITLRKRKPYATRSNKIRKVKTPGGVLTVHYLKKQAKPPRCGDTGVKLNGMPVRRPREYARLSKPKKSVSRAYGGALCGAAVRDRIQRAFLIEEAKIVK 103          
BLAST of Ggra2674.t1 vs. uniprot
Match: M1V626 (60S ribosomal protein L34 n=2 Tax=cellular organisms TaxID=131567 RepID=M1V626_CYAM1)

HSP 1 Score: 128 bits (322), Expect = 1.730e-35
Identity = 63/103 (61.17%), Postives = 79/103 (76.70%), Query Frame = 0
Query:    1 MPDSRVTLRRSSPYKTRSNKFKKVRTPGGKLTIQYLGKLPSVPKCGDTGRPLFGVAVARPKELKRMSKRRKTVSRSYGGVLSGYAVRNRIIRAFLLEEQKIVK 103
            MPD+R+TLR+  PY T+SNK +KV+TPGG L + YL K    P+CGDTG  L GV V RP+EL R+SK +K+VSR+YGGVL G AVR+RI RAFL+EE + VK
Sbjct:    1 MPDTRITLRKRRPYATKSNKIRKVKTPGGILRVHYLKKRTKAPRCGDTGTKLNGVPVRRPRELARLSKPKKSVSRAYGGVLCGNAVRDRIHRAFLIEESRAVK 103          
BLAST of Ggra2674.t1 vs. uniprot
Match: A0A7S0BMA9 (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BMA9_9RHOD)

HSP 1 Score: 124 bits (312), Expect = 2.330e-34
Identity = 62/103 (60.19%), Postives = 78/103 (75.73%), Query Frame = 0
Query:    1 MPDSRVTLRRSSPYKTRSNKFKKVRTPGGKLTIQYLGKLPSVPKCGDTGRPLFGVAVARPKELKRMSKRRKTVSRSYGGVLSGYAVRNRIIRAFLLEEQKIVK 103
            M DSRV LRR   Y+TRSN+ +KV+TPGGKL  QY+ K   +P+CGDTG  L G+A  R KEL ++SK +K+V+R YGG LS  AVR RIIRAFL+EE++IVK
Sbjct:    1 MGDSRVVLRRRGTYRTRSNRIRKVKTPGGKLVAQYIKKTGKIPRCGDTGHLLNGIAAVRSKELAKLSKPKKSVTRVYGGCLSAGAVRTRIIRAFLIEEKQIVK 103          
BLAST of Ggra2674.t1 vs. uniprot
Match: C5DBP0 (KLTH0A04202p n=7 Tax=Lachancea TaxID=300275 RepID=C5DBP0_LACTC)

HSP 1 Score: 123 bits (308), Expect = 1.270e-33
Identity = 63/99 (63.64%), Postives = 74/99 (74.75%), Query Frame = 0
Query:    5 RVTLRRSSPYKTRSNKFKKVRTPGGKLTIQYLGKLPSVPKCGDTGRPLFGVAVARPKELKRMSKRRKTVSRSYGGVLSGYAVRNRIIRAFLLEEQKIVK 103
            RVT RR +PY TRSNK K V+TPGG L  Q+  KL + PKCGDTG PL GV+  RP+E   +SK  KTVSR+YGGVL   AV+ RI+RAFL+EEQKIVK
Sbjct:    4 RVTFRRRNPYNTRSNKIKVVKTPGGVLRAQHTKKLATRPKCGDTGVPLQGVSTMRPREYATVSKTHKTVSRAYGGVLCANAVKERIVRAFLIEEQKIVK 102          
BLAST of Ggra2674.t1 vs. uniprot
Match: A0A0U2TGL7 (60S ribosomal protein L34 n=2 Tax=Acartia pacifica TaxID=335913 RepID=A0A0U2TGL7_ACAPC)

HSP 1 Score: 122 bits (307), Expect = 1.300e-33
Identity = 66/98 (67.35%), Postives = 74/98 (75.51%), Query Frame = 0
Query:    5 RVTLRRSSPYKTRSNKFKKVRTPGGKLTIQYLGKLPSVPKCGDTGRPLFGVAVARPKELKRMSKRRKTVSRSYGGVLSGYAVRNRIIRAFLLEEQKIV 102
            R+T RR   Y TRSN+ KKVRTPGGKL  QYL K PSVPKC  TG  + GV  A  +E  RMSKR KTVSRSYGGVLS  AVR++I+RAFL+EEQKIV
Sbjct:    4 RITYRRRLSYNTRSNRVKKVRTPGGKLVFQYLKKRPSVPKCPVTGLKIKGVKPATNQEKTRMSKRLKTVSRSYGGVLSHQAVRDKIVRAFLIEEQKIV 101          
The following BLAST results are available for this feature:
BLAST of Ggra2674.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IRH26.350e-5990.2960S ribosomal protein L34-A n=1 Tax=Gracilariopsis... [more]
R7Q8571.690e-5890.29Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
M2Y4N13.820e-3863.1160S ribosomal protein L34e n=1 Tax=Galdieria sulph... [more]
A0A7S1TDA27.240e-3865.05Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A1X6NTK01.790e-3662.14Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7J7ILW81.220e-3562.1460S ribosomal protein L34 n=1 Tax=Cyanidiococcus y... [more]
M1V6261.730e-3561.1760S ribosomal protein L34 n=2 Tax=cellular organis... [more]
A0A7S0BMA92.330e-3460.19Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
C5DBP01.270e-3363.64KLTH0A04202p n=7 Tax=Lachancea TaxID=300275 RepID=... [more]
A0A0U2TGL71.300e-3367.3560S ribosomal protein L34 n=2 Tax=Acartia pacifica... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008195Ribosomal protein L34AePRINTSPR01250RIBOSOMALL34coord: 45..55
score: 48.05
coord: 65..87
score: 45.03
coord: 14..27
score: 53.06
coord: 27..44
score: 42.06
IPR008195Ribosomal protein L34AePFAMPF01199Ribosomal_L34ecoord: 4..95
e-value: 4.7E-34
score: 116.5
IPR008195Ribosomal protein L34AePANTHERPTHR1075960S RIBOSOMAL PROTEIN L34coord: 1..114
NoneNo IPR availableGENE3D6.20.340.10coord: 38..116
e-value: 2.3E-30
score: 106.3
NoneNo IPR availableGENE3D6.20.370.70coord: 4..37
e-value: 3.3E-13
score: 51.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 117..139
NoneNo IPR availablePANTHERPTHR10759:SF0FI02850P-RELATEDcoord: 1..114
IPR018065Ribosomal protein L34e, conserved sitePROSITEPS01145RIBOSOMAL_L34Ecoord: 16..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:1198562..1199266 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2674.t1Ggra2674.t1Gracilaria gracilis GNS1m malemRNAtig00000005_pilon 1198562..1199266 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2674.t1 ID=Ggra2674.t1|Name=Ggra2674.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=140bp
MPDSRVTLRRSSPYKTRSNKFKKVRTPGGKLTIQYLGKLPSVPKCGDTGR
PLFGVAVARPKELKRMSKRRKTVSRSYGGVLSGYAVRNRIIRAFLLEEQK
IVKKVIKQQKVQKAKQAAAAAAAATTKKKKGSSKSKGKK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008195Ribosomal_L34Ae
IPR018065Ribosomal_L34e_CS