Ggra2674.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2674.t1
Unique NameGgra2674.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length140
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:1198562..1199266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707418.1
Preferred nameRPL34
PFAMsRibosomal_L34e
Max annot lvl2759|Eukaryota
KEGG koko:K02915
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0017022,GO:0019222,GO:0019439,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0031090,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042254,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0098588,GO:0098805,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Evalue1.09e-37
EggNOG OGsCOG2174@1|root,KOG1790@2759|Eukaryota
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2674Ggra2674Gracilaria gracilis GNS1m malegenetig00000005_pilon 1198562..1199266 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2674.t1Ggra2674.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 1198562..1199266 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2674.t1.start1Ggra2674.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 1198562..1198564 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2674.t1.CDS1Ggra2674.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1198562..1198629 +
Ggra2674.t1.CDS2Ggra2674.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1198700..1198897 +
Ggra2674.t1.CDS3Ggra2674.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1199113..1199266 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2674.t1.exon1Ggra2674.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 1198562..1198629 +
Ggra2674.t1.exon2Ggra2674.t1.exon2Gracilaria gracilis GNS1m maleexontig00000005_pilon 1198700..1198897 +
Ggra2674.t1.exon3Ggra2674.t1.exon3Gracilaria gracilis GNS1m maleexontig00000005_pilon 1199113..1199266 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2674.t1.intron1Ggra2674.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000005_pilon 1198630..1198699 +
Ggra2674.t1.intron2Ggra2674.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000005_pilon 1198898..1199112 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2674.t1.stop1Ggra2674.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 1199264..1199266 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2674.t1 ID=Ggra2674.t1|Name=Ggra2674.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=140bp
MPDSRVTLRRSSPYKTRSNKFKKVRTPGGKLTIQYLGKLPSVPKCGDTGR
PLFGVAVARPKELKRMSKRRKTVSRSYGGVLSGYAVRNRIIRAFLLEEQK
IVKKVIKQQKVQKAKQAAAAAAAATTKKKKGSSKSKGKK*
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spliced messenger RNA

>Ggra2674.t1 ID=Ggra2674.t1|Name=Ggra2674.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=420bp|location=Sequence derived from alignment at tig00000005_pilon:1198562..1199266+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGATTCACGCGTAACTCTTCGGAGGAGCAGCCCGTACAAGACCCG
AAGCAATAAGTTCAAGAAAGTTCGCACCCCTGGAGGAAAGCTTACGATCC
AGTACCTCGGCAAGCTCCCTAGCGTCCCAAAATGTGGTGACACTGGCCGA
CCTCTCTTCGGTGTCGCTGTCGCTCGTCCGAAAGAGCTTAAGCGTATGTC
CAAACGGAGGAAGACCGTTTCCAGATCCTATGGCGGCGTTCTCTCTGGAT
ATGCTGTACGCAACAGGATCATTCGAGCATTCCTTCTCGAAGAGCAAAAG
ATTGTGAAGAAGGTTATCAAGCAGCAGAAAGTCCAAAAGGCGAAGCAGgc
tgctgctgctgctgctgctgctACCACCAAGAAGAAGAAGGGTTCCAGCA
AGTCTAAAGGAAAGAAATAA
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protein sequence of Ggra2674.t1

>Ggra2674.t1 ID=Ggra2674.t1|Name=Ggra2674.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=140bp
MPDSRVTLRRSSPYKTRSNKFKKVRTPGGKLTIQYLGKLPSVPKCGDTGR
PLFGVAVARPKELKRMSKRRKTVSRSYGGVLSGYAVRNRIIRAFLLEEQK
IVKKVIKQQKVQKAKQAAAAAAAATTKKKKGSSKSKGKK*
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mRNA from alignment at tig00000005_pilon:1198562..1199266+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2674.t1 ID=Ggra2674.t1|Name=Ggra2674.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=705bp|location=Sequence derived from alignment at tig00000005_pilon:1198562..1199266+ (Gracilaria gracilis GNS1m male)
ATGCCGGATTCACGCGTAACTCTTCGGAGGAGCAGCCCGTACAAGACCCG
AAGCAATAAGTTCAAGAAGTAAGTCATCTGCTCCTTGCCGTCTACTCCGA
TTGGTATCATGCTCTACTAACGTCGCCCCGATCCGTAGAGTTCGCACCCC
TGGAGGAAAGCTTACGATCCAGTACCTCGGCAAGCTCCCTAGCGTCCCAA
AATGTGGTGACACTGGCCGACCTCTCTTCGGTGTCGCTGTCGCTCGTCCG
AAAGAGCTTAAGCGTATGTCCAAACGGAGGAAGACCGTTTCCAGATCCTA
TGGCGGCGTTCTCTCTGGATATGCTGTACGCAACAGGTACGTCATCTCAT
CTTTATATCGCGTGCAGATGAGGATATGCAATTGCTCCCTAGTCGAGCAC
GGATTCCCTTTTACAGATGGGTTACCCAAATGAGTAGTCTTCATGCTTTT
GTCGGATGCACTTGATCACCCTGCCGTGTTTTTGGCCCTTTTTCGTCTTC
TGCGACCGGACTAACATATCTATTTCCATATGTATTCGTTATGGATTGCA
GGATCATTCGAGCATTCCTTCTCGAAGAGCAAAAGATTGTGAAGAAGGTT
ATCAAGCAGCAGAAAGTCCAAAAGGCGAAGCAGgctgctgctgctgctgc
tgctgctACCACCAAGAAGAAGAAGGGTTCCAGCAAGTCTAAAGGAAAGA
AATAA
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Coding sequence (CDS) from alignment at tig00000005_pilon:1198562..1199266+

>Ggra2674.t1 ID=Ggra2674.t1|Name=Ggra2674.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=420bp|location=Sequence derived from alignment at tig00000005_pilon:1198562..1199266+ (Gracilaria gracilis GNS1m male)
ATGCCGGATTCACGCGTAACTCTTCGGAGGAGCAGCCCGTACAAGACCCG
AAGCAATAAGTTCAAGAAAGTTCGCACCCCTGGAGGAAAGCTTACGATCC
AGTACCTCGGCAAGCTCCCTAGCGTCCCAAAATGTGGTGACACTGGCCGA
CCTCTCTTCGGTGTCGCTGTCGCTCGTCCGAAAGAGCTTAAGCGTATGTC
CAAACGGAGGAAGACCGTTTCCAGATCCTATGGCGGCGTTCTCTCTGGAT
ATGCTGTACGCAACAGGATCATTCGAGCATTCCTTCTCGAAGAGCAAAAG
ATTGTGAAGAAGGTTATCAAGCAGCAGAAAGTCCAAAAGGCGAAGCAGgc
tgctgctgctgctgctgctgctACCACCAAGAAGAAGAAGGGTTCCAGCA
AGTCTAAAGGAAAGAAATAA
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