Ggra2629.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2629.t1
Unique NameGgra2629.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length225
Homology
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BLAST of Ggra2629.t1 vs. uniprot
Match: A0A2V3J344 (RRM domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J344_9FLOR)

HSP 1 Score: 266 bits (681), Expect = 1.800e-87
Identity = 143/225 (63.56%), Postives = 169/225 (75.11%), Query Frame = 0 
Query:    1 MSFAARYSQLRLWHQPLQSAIRQLTTGTATV--PAKQYVRIAGPSSHACTSDIINFLDEQSVAVDKSLRSLVLGQSDIYQNHSVWLYNASTQSNAEDIVSKISGKVLGLKLIRAAVVDQKVVDSMLNVQERPTSGRITLRRRLNTIGPAPDERGRTLLASNLPHLLQPRHLWGFFASYDVVDVRHLRRSGVACITFTSEDEAERALRERANLRLQGKQTIYLKMH 223
            MSFA   S+ RL HQP ++  R LT   A     +K YVRIAGP+S+A   D++NFL EQS     S   LV GQ+DIYQNHSVWLY+A +Q  AE + SKISGKV+GLKLIRAA VD+K+ DSML+  ER    R TLRRRLN I P+PDERGR+LLA++LP LL+PRHLW FFASYDVVDVR LR+SGV+CI FT+E EAERALRER+N+ L G QTI LKMH
Sbjct:    1 MSFAFG-SRFRLLHQPARTISRNLTNDAAPRIGASKHYVRIAGPASYASRCDVLNFLQEQSALPSTSPSVLVQGQADIYQNHSVWLYDAGSQDTAEQVASKISGKVMGLKLIRAAAVDKKIADSMLDPPERGARTRTTLRRRLNLISPSPDERGRSLLATSLPPLLKPRHLWSFFASYDVVDVRLLRKSGVSCIVFTTEAEAERALRERSNISLHGMQTISLKMH 224
The following BLAST results are available for this feature:
BLAST of Ggra2629.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J3441.800e-8763.56RRM domain-containing protein n=1 Tax=Gracilariops... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 154..221
e-value: 1.7E-4
score: 30.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 158..215
e-value: 2.4E-4
score: 20.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 153..224
score: 9.643862
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 140..224
e-value: 2.1E-8
score: 36.2
NoneNo IPR availableCDDcd00590RRM_SFcoord: 155..216
e-value: 1.80074E-6
score: 42.2921
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 135..215

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:988081..988755 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2629.t1Ggra2629.t1Gracilaria gracilis GNS1m malemRNAtig00000005_pilon 988081..988755 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2629.t1 ID=Ggra2629.t1|Name=Ggra2629.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=225bp
MSFAARYSQLRLWHQPLQSAIRQLTTGTATVPAKQYVRIAGPSSHACTSD
IINFLDEQSVAVDKSLRSLVLGQSDIYQNHSVWLYNASTQSNAEDIVSKI
SGKVLGLKLIRAAVVDQKVVDSMLNVQERPTSGRITLRRRLNTIGPAPDE
RGRTLLASNLPHLLQPRHLWGFFASYDVVDVRHLRRSGVACITFTSEDEA
ERALRERANLRLQGKQTIYLKMHQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf