Ggra258.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra258.t1
Unique NameGgra258.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length727
Homology
BLAST of Ggra258.t1 vs. uniprot
Match: A0A2V3IPK5 (Methionine synthase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPK5_9FLOR)

HSP 1 Score: 291 bits (745), Expect = 4.850e-81
Identity = 159/239 (66.53%), Postives = 172/239 (71.97%), Query Frame = 0
Query:  434 LILSVDEFMRHAKLAKRYGAAVVVMGFDEEGQAASRDDRVRICARAYKILVEDVKFNPNDIIFDPNILTVDT-----------------------------------------------AMHSAFLYYGITNGMDMGIVNAGVIPVYLDIPEKLLNLIEDFLLNRSSEATENLLEFSLNMDKKSSLGGGTDADKNKWRSLQVKERLSHALVKGIDEFVLGDVEEARQAADKPLDMAGVP 625
            L + VDEF+RHAKL KRYGAAVVVM FDE GQAA+RD++VRIC+RAYKILVEDVKFNPNDIIFDPNILTV T                                               AMHSAFL++GI+NGMDMGIVNAG+IPVY DIPE LLNLIED LLNR +EATENLLEFSLNMDKKSSLG G DADKNKWR L V +RLSHALVKGIDEFV GDVEEARQAADKPL +   P
Sbjct:  471 LKVGVDEFIRHAKLVKRYGAAVVVMAFDEYGQAATRDEKVRICSRAYKILVEDVKFNPNDIIFDPNILTVATGIEEHNNYAKDFFEATRIIKDTLPHCHISGGVSNISFSFRGNNALREAMHSAFLFHGISNGMDMGIVNAGIIPVYSDIPENLLNLIEDVLLNRKAEATENLLEFSLNMDKKSSLGAGNDADKNKWRELPVNQRLSHALVKGIDEFVNGDVEEARQAADKPLSVIEGP 709          
BLAST of Ggra258.t1 vs. uniprot
Match: R7QHF9 (Methionine synthase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHF9_CHOCR)

HSP 1 Score: 268 bits (686), Expect = 4.210e-73
Identity = 146/234 (62.39%), Postives = 163/234 (69.66%), Query Frame = 0
Query:  439 DEFMRHAKLAKRYGAAVVVMGFDEEGQAASRDDRVRICARAYKILVEDVKFNPNDIIFDPNILTVDT-----------------------------------------------AMHSAFLYYGITNGMDMGIVNAGVIPVYLDIPEKLLNLIEDFLLNRSSEATENLLEFSLNMDKKSSLGGGTDADKNKWRSLQVKERLSHALVKGIDEFVLGDVEEARQAADKPLDMAGVP 625
            +EF+RHA+L K+YGAAVVVM FDEEGQAA+RDD+VRIC RAY+ILV+ V FNPNDIIFDPNILTV T                                               AMHSAFLY+GI+ GMDMGIVNAG+IPVY D+P+KL++LIED LLNRS E TENLLEFSL MDKKSS  G TDA+KNKWR L V ERLSHALVKGID FVLGDVEEAR  ADKPLD+   P
Sbjct:  477 EEFIRHARLVKQYGAAVVVMAFDEEGQAATRDDKVRICERAYRILVDVVNFNPNDIIFDPNILTVATGIEEHNNYAVDFFEATTLIREKLPHCHISGGVSNISFSFRGNNALREAMHSAFLYHGISKGMDMGIVNAGIIPVYSDVPQKLMDLIEDVLLNRSPEGTENLLEFSLTMDKKSSTAGQTDAEKNKWRELPVTERLSHALVKGIDAFVLGDVEEARVEADKPLDVIEGP 710          
BLAST of Ggra258.t1 vs. uniprot
Match: A0A2V3IPK2 (Methionine synthase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPK2_9FLOR)

HSP 1 Score: 245 bits (625), Expect = 2.360e-68
Identity = 137/215 (63.72%), Postives = 148/215 (68.84%), Query Frame = 0
Query:  458 MGFDEEGQAASRDDRVRICARAYKILVEDVKFNPNDIIFDPNILTVDT-----------------------------------------------AMHSAFLYYGITNGMDMGIVNAGVIPVYLDIPEKLLNLIEDFLLNRSSEATENLLEFSLNMDKKSSLGGGTDADKNKWRSLQVKERLSHALVKGIDEFVLGDVEEARQAADKPLDMAGVP 625
            M FDE  QAA+RD++VRI +R YKILVEDVKFNPNDIIFDPNILTV T                                               AMHSAFL++GI+NGMDMGIVNAG+IPVY DIPE LLNLIED LLNR +EATENLLEFSLNMDKKSSLG G DADKNKWR L V +RLSHALVKGIDEFV GDVEEARQAADKPL +   P
Sbjct:    1 MAFDEYEQAATRDEKVRIRSRPYKILVEDVKFNPNDIIFDPNILTVATGIEEHNNYAKDFFEATRIIKDTLPHCHISGGVSNISFSFRGNNALREAMHSAFLFHGISNGMDMGIVNAGIIPVYSDIPENLLNLIEDVLLNRKAEATENLLEFSLNMDKKSSLGAGNDADKNKWRELPVNQRLSHALVKGIDEFVNGDVEEARQAADKPLSVIEGP 215          
BLAST of Ggra258.t1 vs. uniprot
Match: A0A1X6NND8 (Methionine synthase n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NND8_PORUM)

HSP 1 Score: 232 bits (591), Expect = 1.280e-60
Identity = 132/234 (56.41%), Postives = 150/234 (64.10%), Query Frame = 0
Query:  439 DEFMRHAKLAKRYGAAVVVMGFDEEGQAASRDDRVRICARAYKILVEDVKFNPNDIIFDPNILTVDTA-----------------------------------------------MHSAFLYYGITNGMDMGIVNAGVIPVYLDIPEKLLNLIEDFLLNRSSEATENLLEFSLNMDKKSSLGGGTDADKNKWRSLQVKERLSHALVKGIDEFVLGDVEEARQAADKPLDMAGVP 625
            DEF RHA+L +RYGAAVVVM FDEEGQAA+ +D++RIC RAY+ILV++V F P+DIIFDPNILTV T                                                MHSAFLYYGI  GMD+GIVNAG+IPVY DIPE LL LIED LLNRS EATE LL  SL M K   +   TD +KNKWR L V+ERLSHALVKGIDEFV+GD EEARQ   KPL++   P
Sbjct:  475 DEFRRHARLVQRYGAAVVVMAFDEEGQAATTEDKIRICTRAYRILVDEVGFYPHDIIFDPNILTVATGIDEHNGYAVSFFDATEAIRKTLPGAHVSGGVSNISFSFRGNTYLRECMHSAFLYYGIKRGMDVGIVNAGLIPVYTDIPENLLKLIEDVLLNRSDEATEALLAHSLTMGK--GVKRQTDEEKNKWRELVVQERLSHALVKGIDEFVVGDTEEARQQYPKPLEVIEGP 706          
BLAST of Ggra258.t1 vs. uniprot
Match: A0A1Y1IQU7 (Methionine synthase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IQU7_KLENI)

HSP 1 Score: 194 bits (492), Expect = 7.330e-48
Identity = 109/221 (49.32%), Postives = 137/221 (61.99%), Query Frame = 0
Query:  439 DEFMRHAKLAKRYGAAVVVMGFDEEGQAASRDDRVRICARAYKILVEDVKFNPNDIIFDPNILTVDT-----------------------------------------------AMHSAFLYYGITNGMDMGIVNAGVIPVYLDIPEKLLNLIEDFLLNRSSEATENLLEFSLNMDKKSSLGGGTDADKNKWRSLQVKERLSHALVKGIDEFVLGDVEEAR 612
            DEF RHAK+ +R+GAAVVVM FDE+GQAA+  D+VRICARA+KILVE+  FNP DIIFDPNILT+ T                                               A HSAFLY+ I  GMDMGIVNAG I +Y DI + LL  +ED +LNR  +ATE +LEF+  +D K+  G     +K++WR+L V++RLSHALVKGID++V+ D EEAR
Sbjct:  731 DEFKRHAKICRRHGAAVVVMAFDEDGQAATEYDKVRICARAFKILVEECAFNPEDIIFDPNILTIATGLEEHNNYAVDFFRATTKIKQICPGAKISGGVSNISFSFRGNEPVRRAFHSAFLYWAIQAGMDMGIVNAGQIDIYDDIDKDLLAHVEDCILNRRPDATERMLEFATKVDPKA--GAAVGGNKDEWRALPVEKRLSHALVKGIDQYVVADTEEAR 949          
BLAST of Ggra258.t1 vs. uniprot
Match: A0A7S4DBJ3 (Methionine synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBJ3_HETAK)

HSP 1 Score: 192 bits (487), Expect = 2.780e-47
Identity = 109/234 (46.58%), Postives = 137/234 (58.55%), Query Frame = 0
Query:  439 DEFMRHAKLAKRYGAAVVVMGFDEEGQAASRDDRVRICARAYKILVEDVKFNPNDIIFDPNILTVDT-----------------------------------------------AMHSAFLYYGITNGMDMGIVNAGVIPVYLDIPEKLLNLIEDFLLNRSSEATENLLEFSLNMDKKSSLGGGTDADKNKWRSLQVKERLSHALVKGIDEFVLGDVEEARQAADKPLDMAGVP 625
            +EF RHA + K++G A+VVM FDE GQAA+ DD+V +C R+Y ILV++V F P DIIFDPNILTV T                                               AMHS FLY+ +  GMDMGIVNAG++ VY DIP  LL L+ED +LNR  +ATE LL+ SL   +K +  GG      +WR+  V ERL+HAL+KGIDEF+ GDVEE RQA  KPL++   P
Sbjct:  493 EEFKRHATICKKHGCAIVVMAFDENGQAATEDDKVAMCKRSYDILVDEVGFPPEDIIFDPNILTVATGLEEHNNYGVDFINATRRIKEQCPHAKISGGVSNLSFGFRGVNVIREAMHSVFLYHAVAAGMDMGIVNAGMMEVYDDIPADLLALVEDAVLNRRPDATERLLDRSLVEREKQAAAGGKVVKAVEWRTRPVAERLTHALIKGIDEFIDGDVEECRQAVAKPLEVIEGP 726          
BLAST of Ggra258.t1 vs. uniprot
Match: A0A7S2XWE9 (Methionine synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWE9_9STRA)

HSP 1 Score: 191 bits (484), Expect = 6.620e-47
Identity = 114/251 (45.42%), Postives = 147/251 (58.57%), Query Frame = 0
Query:  439 DEFMRHAKLAKRYGAAVVVMGFDEEGQAASRDDRVRICARAYKILVEDVKFNPNDIIFDPNILTVDT-----------------------------------------------AMHSAFLYYGITNGMDMGIVNAGVIPVYLDIPEKLLNLIEDFLLNRSSEATENLLEFSLNMDKKSSLGGGTDADKNKWRSLQVKERLSHALVKGIDEFVLGDVEEARQAADKPLDMAGVPSKLYQEYSRVGTRRDLF 642
            +EF R A + KR+GAAV+VM FDEEGQAA+  ++VRIC R+Y ILV +V+F P DIIFDPNILT+ T                                               A+HS FLY+ +  GMDMGIVNAG++ VY DIP+ LL L+ED +LNR SEATE LLE SL   +K++ GGG    + +WR   V ERL++AL+KGI +++  DVEE RQ  D+PL +   P  L Q  + VG   DLF
Sbjct:  490 EEFKRQAGIIKRHGAAVIVMAFDEEGQAATESEKVRICKRSYDILVNEVQFPPEDIIFDPNILTIATGIEEHNNYGVDFIEATKKIKEICPYARISGGVSNLSFGFRGVNVIREAIHSVFLYHAVAAGMDMGIVNAGMMEVYDDIPKDLLQLVEDAVLNRHSEATEKLLERSLEEKEKAASGGGPKKKEVEWRIKPVTERLTYALIKGISQYIDEDVEECRQTVDRPLQVIEGP--LMQGMNIVG---DLF 735          
BLAST of Ggra258.t1 vs. uniprot
Match: A0A5J4YWK2 (Methionine synthase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YWK2_PORPP)

HSP 1 Score: 190 bits (483), Expect = 9.600e-47
Identity = 115/234 (49.15%), Postives = 138/234 (58.97%), Query Frame = 0
Query:  439 DEFMRHAKLAKRYGAAVVVMGFDEEGQAASRDDRVRICARAYKILVEDVKFNPNDIIFDPNILTVDT-----------------------------------------------AMHSAFLYYGITNGMDMGIVNAGVIPVYLDIPEKLLNLIEDFLLNRSSEATENLLEFSLNMDKKSSLGGGTDADKNKWRSLQVKERLSHALVKGIDEFVLGDVEEARQAADKPLDMAGVP 625
            ++F+  A   KRYGAAVVVM FDEEGQAA+ +D+VRIC RAY+ILV+ V F   DIIFDPNILTV T                                               AMHSAFLY+GI N MDMGIVNAG+IPVY D+   L  LIED LL R++EATE LL  SL M K+      +D +KN+WR+  V+ERL HALVKGID++V+ D EEAR    KPL +   P
Sbjct:  618 EKFIEVATTIKRYGAAVVVMAFDEEGQAATTEDKVRICTRAYRILVDRVGFPATDIIFDPNILTVATGIEEHNRYALNFIEACKIIRETLPHCHISGGVSNVSFSFRGNNVLREAMHSAFLYHGIKNKMDMGIVNAGLIPVYTDVDPYLRELIEDVLLYRNNEATEKLLAHSLTMGKEGDRKQ-SDEEKNRWRTGTVQERLHHALVKGIDQYVMDDAEEARLLYPKPLSVIEGP 850          
BLAST of Ggra258.t1 vs. uniprot
Match: A0A7Y2EIH9 (Dihydropteroate synthase (Fragment) n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A7Y2EIH9_9FLAO)

HSP 1 Score: 178 bits (451), Expect = 6.250e-46
Identity = 101/230 (43.91%), Postives = 135/230 (58.70%), Query Frame = 0
Query:  439 DEFMRHAKLAKRYGAAVVVMGFDEEGQAASRDDRVRICARAYKILVEDVKFNPNDIIFDPNILTVDT-----------------------------------------------AMHSAFLYYGITNGMDMGIVNAGVIPVYLDIPEKLLNLIEDFLLNRSSEATENLLEFSLNMDKKSSLGGGTDADKNKWRSLQVKERLSHALVKGIDEFVLGDVEEARQAADKPLDM 621
            DEF+R AKL KRYGAAV+VM FDE+GQA + + R+ IC R+Y ILV +VKF P DIIFDPNI  V T                                               AMHSAFLY+ I NGM++GIVN  ++ VY +IP+ LL  +ED LLNR  +ATE LL+F+  +  +      T+    +WRS  +++R++HALVKGID F++ DVEEARQ+  KP+++
Sbjct:  133 DEFIRQAKLIKRYGAAVIVMAFDEKGQADNYERRIEICKRSYDILVNEVKFKPQDIIFDPNIFPVATGMEEHKLNALDFFNATKWIRENLPYANVSGGVSNVSFSFRGNTAVREAMHSAFLYHAIKNGMNLGIVNPALLEVYDEIPKDLLECVEDVLLNRREDATERLLDFAETIKGQKK---DTETAVQEWRSDPLQDRITHALVKGIDAFIVEDVEEARQSVAKPIEV 359          
BLAST of Ggra258.t1 vs. uniprot
Match: A0A2T4VNP4 (Methionine synthase n=5 Tax=Archangiaceae TaxID=39 RepID=A0A2T4VNP4_VITXG)

HSP 1 Score: 186 bits (471), Expect = 1.390e-45
Identity = 110/236 (46.61%), Postives = 139/236 (58.90%), Query Frame = 0
Query:  440 EFMRHAKLAKRYGAAVVVMGFDEEGQAASRDDRVRICARAYKILVEDVKFNPNDIIFDPNILTVDT-----------------------------------------------AMHSAFLYYGITNGMDMGIVNAGVIPVYLDIPEKLLNLIEDFLLNRSSEATENLLEFSLNMDKKSSLGGGTDADKNK---WRSLQVKERLSHALVKGIDEFVLGDVEEARQAADKPLDMAGVP 625
            EF+R A+L +RYGAA VVM FDE+GQAA+RDD+VRIC RAY++LV+ V F P DIIFDPNILTV T                                               A+H+AFLY+G+  GMDMGIVNAG++ VY +IP+ LL  +ED LLNR  +AT+ L+  +  M  K+  GGG+ A+  +   WR   V ERLSHALVKGID F+  D EEAR    +PLD+   P
Sbjct:  117 EFLRRARLIRRYGAATVVMAFDEQGQAATRDDKVRICTRAYRLLVDQVGFPPEDIIFDPNILTVATGIEEHNSYAVDFFEATRLIKATLPHAKVSGGVSNVSFSFRGNNPVREAIHAAFLYHGVAAGMDMGIVNAGMLGVYEEIPKDLLVCVEDVLLNRRPDATDRLIALADEM--KARDGGGSKAEVKEDLAWRKAPVAERLSHALVKGIDAFIDADTEEARLLYKRPLDIIEGP 350          
The following BLAST results are available for this feature:
BLAST of Ggra258.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IPK54.850e-8166.53Methionine synthase n=1 Tax=Gracilariopsis chorda ... [more]
R7QHF94.210e-7362.39Methionine synthase n=1 Tax=Chondrus crispus TaxID... [more]
A0A2V3IPK22.360e-6863.72Methionine synthase n=1 Tax=Gracilariopsis chorda ... [more]
A0A1X6NND81.280e-6056.41Methionine synthase n=1 Tax=Porphyra umbilicalis T... [more]
A0A1Y1IQU77.330e-4849.32Methionine synthase n=1 Tax=Klebsormidium nitens T... [more]
A0A7S4DBJ32.780e-4746.58Methionine synthase n=1 Tax=Heterosigma akashiwo T... [more]
A0A7S2XWE96.620e-4745.42Methionine synthase n=1 Tax=Fibrocapsa japonica Ta... [more]
A0A5J4YWK29.600e-4749.15Methionine synthase n=1 Tax=Porphyridium purpureum... [more]
A0A7Y2EIH96.250e-4643.91Dihydropteroate synthase (Fragment) n=1 Tax=Flavob... [more]
A0A2T4VNP41.390e-4546.61Methionine synthase n=5 Tax=Archangiaceae TaxID=39... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 338..386
NoneNo IPR availableCOILSCoilCoilcoord: 281..308
NoneNo IPR availableCOILSCoilCoilcoord: 310..330
NoneNo IPR availablePANTHERPTHR11103SLR1189 PROTEINcoord: 438..507
coord: 504..622
IPR000489Pterin-binding domainPFAMPF00809Pterin_bindcoord: 440..513
e-value: 2.3E-9
score: 37.3
IPR011005Dihydropteroate synthase-likeGENE3D3.20.20.20coord: 436..505
e-value: 7.8E-22
score: 79.3
coord: 506..571
e-value: 1.4E-14
score: 55.4
IPR011005Dihydropteroate synthase-likeSUPERFAMILY51717Dihydropteroate synthetase-likecoord: 439..558
IPR036594Methionine synthase domainGENE3D1.10.1240.10Methionine synthase domaincoord: 575..626
e-value: 1.5E-6
score: 29.9
IPR003759Cobalamin (vitamin B12)-binding module, cap domainPROSITEPS51337B12_BINDING_NTERcoord: 579..620
score: 10.954441

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000324_piloncontigtig00000324_pilon:9593..18045 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra258.t1Ggra258.t1Gracilaria gracilis GNS1m malemRNAtig00000324_pilon 9593..18045 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra258.t1 ID=Ggra258.t1|Name=Ggra258.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=727bp
MGEFNFSPLFEPNPFTDPLIDILKEGNKPYSTELYQKLCNAIARFMWVNA
LPFDVDQPIFQSIFRRTVKSYPWFGDHELTTLKIFSIIQDYHQRLHGNFV
KHIRRVTEPRLDHFIRIYIHCLYLIGGKVVLSFVADVDRDGKYVVYMGSL
TVFYEEVTYNIFEEQMLCLLEEYVKVENISCLAGNAFACNELVKLFCIRH
KIVRYCYVELSKAVNYIILENISSTTLSIYRGRVQTQLRKVYLFGVWNLA
IRESAIEREKKEAEAALATILGSFEKAVAALQGTKDENSRLLVEFEATEE
EVDRLKKQLINNLRPSLEKLSKEVQTLEAKAFDISSTFEDAKEELQKEKD
RMASSNKSIWTARQNTEELSEKIEALNLEAARLSKKINKKAMHMFETAKE
ENRGLLKKKAIIEEDTPGIVFATLWEDAAVPPLLILSVDEFMRHAKLAKR
YGAAVVVMGFDEEGQAASRDDRVRICARAYKILVEDVKFNPNDIIFDPNI
LTVDTAMHSAFLYYGITNGMDMGIVNAGVIPVYLDIPEKLLNLIEDFLLN
RSSEATENLLEFSLNMDKKSSLGGGTDADKNKWRSLQVKERLSHALVKGI
DEFVLGDVEEARQAADKPLDMAGVPSKLYQEYSRVGTRRDLFEWIRGSRC
SRRQRNENVGMKAGFLAKSSCITAKSSKSISSSPSSRAPDLVYSSSKNLE
YGCPLDSPVTELEGIASAVAPNLRVA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000489Pterin-binding_dom
IPR011005Dihydropteroate_synth-like
IPR036594Meth_synthase_dom
IPR003759Cbl-bd_cap