Ggra2541.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2541.t1
Unique NameGgra2541.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length269
Homology
BLAST of Ggra2541.t1 vs. uniprot
Match: A0A2V3IE76 (Zinc finger protein CONSTANS-LIKE 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IE76_9FLOR)

HSP 1 Score: 362 bits (928), Expect = 1.230e-123
Identity = 205/271 (75.65%), Postives = 234/271 (86.35%), Query Frame = 0
Query:    1 MVRNCEMCPEDRAVAATVYCAADACYLCAKCDVEVHNANRLAQRHVRSAVAACEMEGSSIHDESEEALVPDVSAIQHDDTDTLTFEDAADYDFTEIGLGRMPGLTGVEEMSAIWGEGKLAKNWDVSWEEVVQDGFVHVVPDVEPRTDRMAEECLKAEPVM----VLEQKEVVRCGVKRGREQEEQTVXXXXXXXXXXXXXXXXKEALERFRSKRANRSFAKRVRYECRKQLADSRPRVKGRFVRKVEMALYRKYGNMYREHLHELENSNSS 267
            MVRNCEMCPED AV ATVYCAADACYLCAKCD+EVH+ANRLAQRHVRSAV+ACE++GSSIHDES+E +VPD++ I+H+++ TLTFEDAADYDF E+GLGRMPGL GVEE+  IWGEGKL KNWD+SWE+VV+DGF HVVPDVE R  + AE+   A  V+    ++E K+ VR G KR RE      XXXXXXXXXXXXXXX KEALERFRSKRANRSFAKRVRYECRKQLADSRPRVKGRFVRKVEMALYRKYGN+YREHLHEL++ ++S
Sbjct:    1 MVRNCEMCPEDHAVMATVYCAADACYLCAKCDIEVHSANRLAQRHVRSAVSACELDGSSIHDESDEGIVPDIAHIRHEESTTLTFEDAADYDFGELGLGRMPGLAGVEEIG-IWGEGKLGKNWDLSWEDVVEDGFDHVVPDVESRNQK-AEDVAAAVVVVKMEALVEDKKEVRIGEKRAREXXXXXXXXXXXXXXXXXXXXX-KEALERFRSKRANRSFAKRVRYECRKQLADSRPRVKGRFVRKVEMALYRKYGNLYREHLHELDSGSAS 268          
BLAST of Ggra2541.t1 vs. uniprot
Match: R7QFM0 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFM0_CHOCR)

HSP 1 Score: 134 bits (337), Expect = 1.360e-33
Identity = 81/163 (49.69%), Postives = 105/163 (64.42%), Query Frame = 0
Query:    1 MVRNCEMCPEDRAVAATVYCAADACYLCAKCDVEVHNANRLAQRHVRSAVAACEM-EGSSIHDESEEALVPDVSAI---QHDDTDTL-------------TFEDAADYDFT-EIGLG-RMPGLTGVEEMSAIWGEGKLAKNW--DVSWEEVVQDGFVHVVPDV 142
            MVR CE+CPE +A  A VYC ADAC+LC+ CD EVH+ANRLA RHVR AVA  +  +GSSI+D+SE ALVPDV+ +   +H D  +              +FEDAA+YDF  E GLG +MP L  +++ +   G   L K++  D+SWE VV +   HVVPDV
Sbjct:    1 MVRVCELCPEGKARQAVVYCPADACFLCSACDEEVHSANRLAGRHVRRAVATDDGGDGSSINDDSENALVPDVAELDEGEHSDPSSSEDMLLMSLPIQVPSFEDAAEYDFDFEGGLGGKMPALCAIDDDALFTGTKSLGKSFYGDISWESVVPENIEHVVPDV 163          
BLAST of Ggra2541.t1 vs. uniprot
Match: A0A2V3J5T0 (Zinc finger protein CONSTANS-LIKE 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5T0_9FLOR)

HSP 1 Score: 82.8 bits (203), Expect = 5.010e-15
Identity = 81/266 (30.45%), Postives = 116/266 (43.61%), Query Frame = 0
Query:    7 MCPEDRAVAATVYCAADACYLCAKCDVEVHNANRLAQRHVR-----SAVAACEMEGSSIHDESEEALVPDV---------------SAIQHDDT-DTLTFEDAADYDFTEIGLGRMPGLTGVEEMSAIWGEGKLAKNWDVSWEEVVQDGFVHVVPDVEPRTDRMAEE------------CLKAEPVMVLEQKEVVRCGVKRGREQEEQTVXXXXXXXXXXXXXXXXKEALERFRSKRANRSFAKRVRYECRKQLADSRPRVKGRFV 239
            +C   R + A+VYC AD+ YLC  CD  +H+AN+L++RH R     ++ +       ++ D SE + +P                 +A   DD  D++  +   D+      L  M G    +E   +     L+ +  V   +V     +H VP    R  R                 L+ +P    E   VV    +     + +++                  ALERFR+KRANRSF KRVRY CRKQLADSRPRVKGRFV
Sbjct:    5 LCASCRTIDASVYCQADSAYLCTICDHSIHSANKLSRRHSRIPIHNNSFSPIAPSTDTLLDHSESSTLPSAETDNLISILPPGVSSNAFSVDDLLDSIVPQPNDDH------LTSMAGAYVKKEAETLLQSSGLSLDAMVPQLDVWSG--LHQVPQQPGRRSRPPTSSFDFSAVVPNMPALQPQPTSSAEP--VVPTQSEASSTDDSESIMLKRKRHRLA--------ALERFRNKRANRSFRKRVRYACRKQLADSRPRVKGRFV 252          
BLAST of Ggra2541.t1 vs. uniprot
Match: A0A1X6P4S3 (CCT domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P4S3_PORUM)

HSP 1 Score: 77.8 bits (190), Expect = 1.050e-12
Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = 0
Query:  202 ALERFRSKRANRSFAKRVRYECRKQLADSRPRVKGRFVRKVEMALYRKYGNMYREHLHEL 261
            A+ RFR+KRA RSF K+V Y  RK LAD RPRVKGRFV +  MALY++YG+ YREHL E+
Sbjct:  276 AMSRFRAKRARRSFTKKVMYTVRKDLADVRPRVKGRFVSRTHMALYKRYGDSYREHLDEV 335          
BLAST of Ggra2541.t1 vs. uniprot
Match: A0A1J3EMP2 (Zinc finger protein CONSTANS-LIKE 4 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3EMP2_NOCCA)

HSP 1 Score: 60.5 bits (145), Expect = 2.200e-8
Identity = 29/46 (63.04%), Postives = 38/46 (82.61%), Query Frame = 0
Query:  200 KEALERFRSKRANRSFAKRVRYECRKQLADSRPRVKGRFVRKVEMA 245
            KE +E++RSKR  R+F KR++YECRK LADSRPR++GRF R  EM+
Sbjct:   46 KERIEKYRSKRNLRNFNKRIKYECRKTLADSRPRIRGRFARNDEMS 91          
BLAST of Ggra2541.t1 vs. uniprot
Match: R7QSJ2 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QSJ2_CHOCR)

HSP 1 Score: 64.7 bits (156), Expect = 2.300e-8
Identity = 33/38 (86.84%), Postives = 34/38 (89.47%), Query Frame = 0
Query:  202 ALERFRSKRANRSFAKRVRYECRKQLADSRPRVKGRFV 239
            AL RFR KRANRSF K+VRY CRKQLADSRPRVKGRFV
Sbjct:  282 ALRRFRHKRANRSFRKKVRYACRKQLADSRPRVKGRFV 319          
BLAST of Ggra2541.t1 vs. uniprot
Match: A0A833RC60 (Uncharacterized protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833RC60_9POAL)

HSP 1 Score: 63.9 bits (154), Expect = 3.510e-8
Identity = 71/255 (27.84%), Postives = 104/255 (40.78%), Query Frame = 0
Query:    5 CEMCPEDRAVAATVYCAADACYLCAKCDVEVHNANRLAQRHVR-------SAVAACEM------EGSSIHDESEEALVPDVSAIQHDDTDTLTFEDAADYDFTEIGLGRMPGLTGVEEMSAIWGEG---KLAKNWDVSWEEVVQDGFVHVVPDVEPRTDRMAEECLKAEPVMVLEQKEVVRCGVKRGREQEEQTVXXXXXXXXXXXXXXXXKEALERFRSKRANRSFAKRVRYECRKQLADSRPRVKGRFVRKVE 243
            CE+C  +    A+V C ADA  LCA CD ++H+AN LA RHVR       SAV +          G+   DE  EA     + +  + T     E+   +   E G G   GL G E++   W  G    +    +  W  +    +  V  +        + E          E+++ +   V R                         +  L R+R KR NR F K +RY  RK  A++RPR+KGRFV++ E
Sbjct:   52 CEVCERN---PASVSCRADAAALCATCDADIHSANPLASRHVRVPVVPFVSAVGSLAKPMPPVGSGTLFGDEESEAEA--ATWLLAEPTGEAKQEEVVCFGGEEEGYG---GLFG-EDVKKDWDGGANLSVGVGNEFDWGYINTGLYSPVYQEASFTNSGSSSEAGVVPEATPYEKEQTMYAHVDR-------------------------EARLMRYREKRKNRRFQKTIRYASRKAYAETRPRIKGRFVKREE 272          
BLAST of Ggra2541.t1 vs. uniprot
Match: A0A835RT70 (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835RT70_VANPL)

HSP 1 Score: 62.8 bits (151), Expect = 7.310e-8
Identity = 71/259 (27.41%), Postives = 109/259 (42.08%), Query Frame = 0
Query:    8 CPEDRAVAATVYCAADACYLCAKCDVEVHNANRLAQRHVRSAVAACEMEGSSIHDE---------SEEALVPDVSAIQHDDTDTLTFE-DAADY-DFTEIGLGRMPGLTGVEEMSAIWGEG-----KLAKNWDVSWEEVVQDGFVHVVP---DVEPRTDRMAEECLKAEPVMVLEQKEVVRCGVKRGREQEEQTVXXXXXXXXXXXXXXXXKEA-LERFRSKRANRSFAKRVRYECRKQLADSRPRVKGRFVRKVEMAL 246
            C   R+V  +VYC ADA YLC  CD  +H+AN LA+RH R  V    + G  +  +         SEE    +   ++ +  D      +  DY D  E       G    +E     G+G     KL +++   +      G + + P     +  TD  + E +   P   +E    +  G K    Q+   +                +EA + R+R KR  R F K +RY  RK  A++RPRVKGRF ++ ++ L
Sbjct:   18 CDSCRSVPCSVYCRADAAYLCGGCDATIHSANSLARRHYRVPVLPITIGGLVVGMKPTVNRCLRRSEEVAAEEEXXVEVEVEDGFFLGGEVEDYLDLVEFSSCDDDGQIWEKEKKQSGGDGFEDEQKLIQSFQTGYG-ADNTGEISLSPMEGTEKSMTDISSSEIISVPPKAAIE----LFLGPKLQTAQQFNLMD---------------REARVLRYREKRKTRRFEKIIRYASRKAYAETRPRVKGRFAKRNDVQL 256          
BLAST of Ggra2541.t1 vs. uniprot
Match: A0A835VCS3 (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835VCS3_VANPL)

HSP 1 Score: 63.2 bits (152), Expect = 1.190e-7
Identity = 68/256 (26.56%), Postives = 106/256 (41.41%), Query Frame = 0
Query:    8 CPEDRAVAATVYCAADACYLCAKCDVEVHNANRLAQRHVRSAVAACEMEGSSIHDE---------SEEALVPDVSAIQHDDTDTLTFEDAADYDFTEIGLGRMPGLTGVEEMSAIWGEG-----KLAKNWDVSW--EEVVQDGFVHVVPDVEPRTDRMAEECLKAEPVMVLEQKEVVRCGVKRGREQEEQTVXXXXXXXXXXXXXXXXKEA-LERFRSKRANRSFAKRVRYECRKQLADSRPRVKGRFVRKVEMAL 246
            C   R+V  +VYC ADA YLC  CD  +H+AN LA+RH R  V    + G  +  +         SEE    +   ++ +D   L  E     D  E       G    +E     G+G     KL +++   +  +   +     +    +  T   + E +   P   +E    +  G K    Q+   +                +EA + R+R KR  R F K +RY  RK  A++RPRVKGRF ++ ++ L
Sbjct:  399 CDSCRSVPCSVYCRADAAYLCGGCDATIHSANSLARRHYRVPVLPITIGGLVVGMKPTVNRCLRRSEEVAAEEEEEVEVEDGFFLGGEVEDYLDLVEFSSCDDDGQIWEKEKKQSGGDGFEDEQKLIQSFQTGYGADNTEEISLSPMEGTEKSMTGISSSEIISVPPKAAIE----LFLGPKLQTAQQFNLMD---------------REARVLRYREKRKTRRFEKIIRYASRKAYAETRPRVKGRFAKRNDVQL 635          
BLAST of Ggra2541.t1 vs. uniprot
Match: M2XTY0 (Transcription factor n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XTY0_GALSU)

HSP 1 Score: 62.4 bits (150), Expect = 1.190e-7
Identity = 29/42 (69.05%), Postives = 37/42 (88.10%), Query Frame = 0
Query:  202 ALERFRSKRANRSFAKRVRYECRKQLADSRPRVKGRFVRKVE 243
            ALERFR KR+NR + K++RYECRK+LAD RPR++GRFV+K E
Sbjct:  249 ALERFRQKRSNRCYQKKIRYECRKRLADVRPRIRGRFVKKEE 290          
The following BLAST results are available for this feature:
BLAST of Ggra2541.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IE761.230e-12375.65Zinc finger protein CONSTANS-LIKE 3 n=1 Tax=Gracil... [more]
R7QFM01.360e-3349.69Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2V3J5T05.010e-1530.45Zinc finger protein CONSTANS-LIKE 1 n=1 Tax=Gracil... [more]
A0A1X6P4S31.050e-1265.00CCT domain-containing protein n=1 Tax=Porphyra umb... [more]
A0A1J3EMP22.200e-863.04Zinc finger protein CONSTANS-LIKE 4 (Fragment) n=1... [more]
R7QSJ22.300e-886.84Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A833RC603.510e-827.84Uncharacterized protein n=1 Tax=Carex littledalei ... [more]
A0A835RT707.310e-827.41Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
A0A835VCS31.190e-726.56Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
M2XTY01.190e-769.05Transcription factor n=1 Tax=Galdieria sulphuraria... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 175..209
NoneNo IPR availableGENE3D3.90.226.10coord: 80..213
e-value: 4.5E-6
score: 28.1
NoneNo IPR availableCDDcd19821Bbox1_BBX-likecoord: 5..47
e-value: 1.75737E-12
score: 58.4631
IPR010402CCT domainPFAMPF06203CCTcoord: 199..241
e-value: 2.5E-18
score: 65.9
IPR010402CCT domainPROSITEPS51017CCTcoord: 199..241
score: 15.50713
IPR045281Zinc finger protein CONSTANS-likePANTHERPTHR31319ZINC FINGER PROTEIN CONSTANS-LIKE 4coord: 2..245
IPR000315B-box-type zinc fingerPROSITEPS50119ZF_BBOXcoord: 3..50
score: 9.257189
IPR001289Nuclear transcription factor Y subunit APROSITEPS51152NFYA_HAP2_2coord: 177..241
score: 9.767643

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:660063..660869 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2541.t1Ggra2541.t1Gracilaria gracilis GNS1m malemRNAtig00000005_pilon 660063..660869 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2541.t1 ID=Ggra2541.t1|Name=Ggra2541.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=269bp
MVRNCEMCPEDRAVAATVYCAADACYLCAKCDVEVHNANRLAQRHVRSAV
AACEMEGSSIHDESEEALVPDVSAIQHDDTDTLTFEDAADYDFTEIGLGR
MPGLTGVEEMSAIWGEGKLAKNWDVSWEEVVQDGFVHVVPDVEPRTDRMA
EECLKAEPVMVLEQKEVVRCGVKRGREQEEQTVDEEEEQKALERRRKRRK
EALERFRSKRANRSFAKRVRYECRKQLADSRPRVKGRFVRKVEMALYRKY
GNMYREHLHELENSNSSC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010402CCT_domain
IPR045281CONSTANS-like
IPR000315Znf_B-box
IPR001289NFYA