Ggra2541.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2541.t1
Unique NameGgra2541.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length269
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:660063..660869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703374.1
PFAMsCCT,zf-B_box
Max annot lvl2759|Eukaryota
KEGG koko:K19720
KEGG Pathwayko04611,ko04926,ko04933,ko04974,ko05146,map04611,map04926,map04933,map04974,map05146
Evalue1.49e-08
EggNOG OGsCOG5641@1|root,KOG1601@2759|Eukaryota
Descriptiontranscription, DNA-templated
COG categoryK
BRITEko00000,ko00001,ko00536
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2541Ggra2541Gracilaria gracilis GNS1m malegenetig00000005_pilon 660063..660869 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2541.t1.stop1Ggra2541.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 660063..660065 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2541.t1.CDS1Ggra2541.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 660063..660869 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2541.t1.exon1Ggra2541.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 660063..660869 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2541.t1.start1Ggra2541.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 660867..660869 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2541.t1Ggra2541.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 660063..660869 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2541.t1 ID=Ggra2541.t1|Name=Ggra2541.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=269bp
MVRNCEMCPEDRAVAATVYCAADACYLCAKCDVEVHNANRLAQRHVRSAV
AACEMEGSSIHDESEEALVPDVSAIQHDDTDTLTFEDAADYDFTEIGLGR
MPGLTGVEEMSAIWGEGKLAKNWDVSWEEVVQDGFVHVVPDVEPRTDRMA
EECLKAEPVMVLEQKEVVRCGVKRGREQEEQTVDEEEEQKALERRRKRRK
EALERFRSKRANRSFAKRVRYECRKQLADSRPRVKGRFVRKVEMALYRKY
GNMYREHLHELENSNSSC*
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spliced messenger RNA

>Ggra2541.t1 ID=Ggra2541.t1|Name=Ggra2541.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=807bp|location=Sequence derived from alignment at tig00000005_pilon:660063..660869- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCGCAATTGCGAAATGTGCCCCGAGGATCGCGCGGTGGCCGCCAC
CGTGTACTGCGCCGCCGACGCCTGCTACCTGTGCGCAAAGTGTGACGTCG
AGGTGCACAACGCCAACAGACTGGCGCAGCGCCATGTACGCAGTGCCGTC
GCCGCCTGCGAAATGGAAGGATCATCCATTCACGACGAGTCCGAGGAAGC
CCTGGTACCGGACGTGTCGGCCATTCAACACGATGACACCGACACACTCA
CCTTTGAAGACGCCGCTGACTACGACTTCACCGAAATTGGGCTGGGGCGC
ATGCCCGGCCTCACTGGCGTGGAGGAAATGAGCGCCATCTGGGGCGAGGG
CAAACTGGCCAAGAACTGGGACGTTAGCTGGGAAGAGGTTGTGCAGGACG
GCTTTGTGCACGTGGTGCCGGACGTGGAGCCGCGCACAGACAGAATGGCT
GAAGAGTGCCTCAAGGCTGAGCCAGTGATGGTGCTGGAACAGAAGGAAGT
TGTGCGGTGCGGCGTGAAGCGCGGCAGGGAACAGGAGGAACAAACAGTGG
ACGAGGAGGAAGAGCAGAAGGCATTGGAGAGAAGGAGAAAGCGGAGAAAG
GAGGCGTTGGAACGATTCCGGTCGAAGAGAGCGAACCGCTCGTTCGCAAA
GCGCGTGAGATACGAGTGCAGGAAGCAGCTGGCAGACAGCAGACCACGCG
TAAAAGGGCGGTTTGTGAGGAAGGTTGAGATGGCGTTGTACCGGAAATAC
GGCAACATGTACAGAGAACACCTGCATGAACTGGAGAATTCGAACAGCTC
ATGCTGA
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protein sequence of Ggra2541.t1

>Ggra2541.t1 ID=Ggra2541.t1|Name=Ggra2541.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=269bp
MVRNCEMCPEDRAVAATVYCAADACYLCAKCDVEVHNANRLAQRHVRSAV
AACEMEGSSIHDESEEALVPDVSAIQHDDTDTLTFEDAADYDFTEIGLGR
MPGLTGVEEMSAIWGEGKLAKNWDVSWEEVVQDGFVHVVPDVEPRTDRMA
EECLKAEPVMVLEQKEVVRCGVKRGREQEEQTVDEEEEQKALERRRKRRK
EALERFRSKRANRSFAKRVRYECRKQLADSRPRVKGRFVRKVEMALYRKY
GNMYREHLHELENSNSSC*
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mRNA from alignment at tig00000005_pilon:660063..660869-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2541.t1 ID=Ggra2541.t1|Name=Ggra2541.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=807bp|location=Sequence derived from alignment at tig00000005_pilon:660063..660869- (Gracilaria gracilis GNS1m male)
ATGGTTCGCAATTGCGAAATGTGCCCCGAGGATCGCGCGGTGGCCGCCAC
CGTGTACTGCGCCGCCGACGCCTGCTACCTGTGCGCAAAGTGTGACGTCG
AGGTGCACAACGCCAACAGACTGGCGCAGCGCCATGTACGCAGTGCCGTC
GCCGCCTGCGAAATGGAAGGATCATCCATTCACGACGAGTCCGAGGAAGC
CCTGGTACCGGACGTGTCGGCCATTCAACACGATGACACCGACACACTCA
CCTTTGAAGACGCCGCTGACTACGACTTCACCGAAATTGGGCTGGGGCGC
ATGCCCGGCCTCACTGGCGTGGAGGAAATGAGCGCCATCTGGGGCGAGGG
CAAACTGGCCAAGAACTGGGACGTTAGCTGGGAAGAGGTTGTGCAGGACG
GCTTTGTGCACGTGGTGCCGGACGTGGAGCCGCGCACAGACAGAATGGCT
GAAGAGTGCCTCAAGGCTGAGCCAGTGATGGTGCTGGAACAGAAGGAAGT
TGTGCGGTGCGGCGTGAAGCGCGGCAGGGAACAGGAGGAACAAACAGTGG
ACGAGGAGGAAGAGCAGAAGGCATTGGAGAGAAGGAGAAAGCGGAGAAAG
GAGGCGTTGGAACGATTCCGGTCGAAGAGAGCGAACCGCTCGTTCGCAAA
GCGCGTGAGATACGAGTGCAGGAAGCAGCTGGCAGACAGCAGACCACGCG
TAAAAGGGCGGTTTGTGAGGAAGGTTGAGATGGCGTTGTACCGGAAATAC
GGCAACATGTACAGAGAACACCTGCATGAACTGGAGAATTCGAACAGCTC
ATGCTGA
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Coding sequence (CDS) from alignment at tig00000005_pilon:660063..660869-

>Ggra2541.t1 ID=Ggra2541.t1|Name=Ggra2541.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=807bp|location=Sequence derived from alignment at tig00000005_pilon:660063..660869- (Gracilaria gracilis GNS1m male)
ATGGTTCGCAATTGCGAAATGTGCCCCGAGGATCGCGCGGTGGCCGCCAC
CGTGTACTGCGCCGCCGACGCCTGCTACCTGTGCGCAAAGTGTGACGTCG
AGGTGCACAACGCCAACAGACTGGCGCAGCGCCATGTACGCAGTGCCGTC
GCCGCCTGCGAAATGGAAGGATCATCCATTCACGACGAGTCCGAGGAAGC
CCTGGTACCGGACGTGTCGGCCATTCAACACGATGACACCGACACACTCA
CCTTTGAAGACGCCGCTGACTACGACTTCACCGAAATTGGGCTGGGGCGC
ATGCCCGGCCTCACTGGCGTGGAGGAAATGAGCGCCATCTGGGGCGAGGG
CAAACTGGCCAAGAACTGGGACGTTAGCTGGGAAGAGGTTGTGCAGGACG
GCTTTGTGCACGTGGTGCCGGACGTGGAGCCGCGCACAGACAGAATGGCT
GAAGAGTGCCTCAAGGCTGAGCCAGTGATGGTGCTGGAACAGAAGGAAGT
TGTGCGGTGCGGCGTGAAGCGCGGCAGGGAACAGGAGGAACAAACAGTGG
ACGAGGAGGAAGAGCAGAAGGCATTGGAGAGAAGGAGAAAGCGGAGAAAG
GAGGCGTTGGAACGATTCCGGTCGAAGAGAGCGAACCGCTCGTTCGCAAA
GCGCGTGAGATACGAGTGCAGGAAGCAGCTGGCAGACAGCAGACCACGCG
TAAAAGGGCGGTTTGTGAGGAAGGTTGAGATGGCGTTGTACCGGAAATAC
GGCAACATGTACAGAGAACACCTGCATGAACTGGAGAATTCGAACAGCTC
ATGCTGA
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