Ggra2528.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2528.t1
Unique NameGgra2528.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length521
Homology
BLAST of Ggra2528.t1 vs. uniprot
Match: A0A2V3IEL5 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEL5_9FLOR)

HSP 1 Score: 478 bits (1231), Expect = 2.900e-164
Identity = 233/328 (71.04%), Postives = 264/328 (80.49%), Query Frame = 0
Query:  191 EATIAFHVSVRKSNVAFLRRFLNRIYHEDNLYLVDYAPPLQSDDFAGFLNAENVHHRLADPFVENGVSEVINILDGMAFFLDREDNLGLPENSFDYYIHCTPDYYPVLNPTHIRKVLSAYKGKQPPPNYLHFFHDSQLPLFANEINHVVFDFSLAFNRSLLPTTELHRLRITHPDYKKRRMEFPRAVKRFVVNHAFVELAADSILSKRLLLTLGDTAHVDERFFAALVANNKADIGKVIHSTSLQCVNSNAIDAAVKGSLPDFSPKPITLDFLRSTSEPCLFAGPFAKTNDVMLMSIDKELLIPPGTQGKPSGLGYHDDVYEKLQKVI 518
            EATIAFHV+V KSNV  L RFL+R+YH  NLYLVDYAPPL++ ++  +   +N+HHR ADPFVENGVSEVINILDGM+FFLDRED L     SFDYYIHCTPDYYPV+NPTH+R+VLS  K + PPPN+LHFFH+SQLPLF+ EINH   DF+LAFNRSL  +TELH L I HPD  KR   FPRA KR VVNH FV+LA DS LSKRLL+ LGDT+HVDERFFAALVANN  DIGKVI STSLQCVNS AID  V+ SLPD+SPKPIT++FL  TSEPCLFAGPF K +  +   IDKE LIPPGTQGKP G+GYHD VYEKL+  I
Sbjct:   28 EATIAFHVNVGKSNVDLLSRFLSRVYHAKNLYLVDYAPPLEAKNYEMYFRRDNIHHRGADPFVENGVSEVINILDGMSFFLDREDVLSSGNRSFDYYIHCTPDYYPVVNPTHMRRVLSYAKEEYPPPNFLHFFHESQLPLFSTEINHAYLDFALAFNRSLPLSTELHSLGIIHPDANKRVFRFPRATKRLVVNHDFVKLAVDSALSKRLLMALGDTSHVDERFFAALVANNNLDIGKVIRSTSLQCVNSRAIDTPVEKSLPDYSPKPITVEFLHKTSEPCLFAGPFMKRDTHLFRRIDKEFLIPPGTQGKPDGIGYHDLVYEKLRATI 355          
BLAST of Ggra2528.t1 vs. uniprot
Match: R7QM71 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QM71_CHOCR)

HSP 1 Score: 298 bits (762), Expect = 2.220e-93
Identity = 155/330 (46.97%), Postives = 206/330 (62.42%), Query Frame = 0
Query:  192 ATIAFHVSVRKSNVAFLRRFLNRIYHEDNLYLVDYAPPLQSDDFAGFLNAENVHHRLADPFVENGVSEVINILDGMAFFLDREDNLGLPENSFDYYIHCTPDYYPVLNPTHIRKVLSAYKGKQPPPNYLHFFHDSQLPLFANEINHVVFDFSLAFNRSLLPTTELHRLRITHPDYKKRRMEFPRAVKRFVVNHAFVELAADSILSKRLLLTLGDTAHVDERFFAALVANNKADIGKVIHSTSLQCVNSNAIDAAVKGSLPDFSPKPITLDFLRSTSEPCLFAGPF---AKTNDVMLMSIDKELLIPPGTQGKPSGLGYHDDVYEKLQKVI 518
            ATIAFH+SV ++ +  L RF  RIYH  NLYL+ +A  L     +  +   NVH R A+P+V +GVSE INILD MA+FLDRED L   + SFDYYIHCTP+ YP +    +R +L   +       + HF H SQLPLF  E++ +  D+SL+FNRSL     L   +  HPD+++R  E  R  K FV +  +V++AADS+LSK LL++LGD +HV E FF +L A    +  K+I +TSL+C N N +D AVK  LP + P+  + DFL  T EPCLF GPF      N  +   ID ELLI PGTQG+P G  YHD VY  L++++
Sbjct:   35 ATIAFHISVNEAQLPLLERFFFRIYHPSNLYLLTFAHSLDPRAKSARITGRNVHIRSAEPYVPDGVSEAINILDAMAYFLDREDALASDKPSFDYYIHCTPNDYPTVTAERMRTLLGFARDHLDAATFFHFTHTSQLPLFDGELSRIHIDYSLSFNRSLTLEEGLEATKSYHPDHRRRTAEILRTDKHFVAHRRYVKIAADSMLSKHLLMSLGDASHVFEHFFGSLAAAASEENIKLIRTTSLRCTNFNDLDRAVKHILPGYKPRSPSTDFLLRTVEPCLFTGPFPDDGPENLAIRNRIDMELLIAPGTQGRPEGPSYHDRVYGNLKRLV 364          
BLAST of Ggra2528.t1 vs. uniprot
Match: A0A2V3IEL3 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEL3_9FLOR)

HSP 1 Score: 258 bits (658), Expect = 2.630e-79
Identity = 115/174 (66.09%), Postives = 143/174 (82.18%), Query Frame = 0
Query:   21 FAEPVTAAAVIHEEDGTWGSVVFHQWTKTTPVVVSMLFQNLKIHEMVPVNYQIWDEPVHYDWYSREDRCGKKALKTMMSVKGNWVGDLGMRHRLMKSDRFAEVLYDKKLSLYEGEEHSIIGKTFVIKQGAGESSYSCATIYASKLHSQRPGAIPCEVKLYPDCVVGAIEDEATI 194
            FAE  TA+A+IHEEDG WGS+VFHQW K + VV+S+L +N+K++  VP+NYQIW+EPVHYDWY +E+RC  KALKT+M V G+ VG+LGMRHRLM S RFAEV+YDKKLSLY+GEEH+IIGKTFV++QG+ ES Y CATIY + LHS RPGAIPCEV  Y DCV+G   ++  +
Sbjct:   24 FAERKTASAIIHEEDGMWGSIVFHQWKKQSAVVISLLLRNIKMNGHVPINYQIWEEPVHYDWYKKEERCSAKALKTVMRVGGSDVGNLGMRHRLMTSSRFAEVVYDKKLSLYDGEEHNIIGKTFVVQQGSNESDYRCATIYETTLHSLRPGAIPCEVGHYSDCVLGTSSNDTCV 197          
The following BLAST results are available for this feature:
BLAST of Ggra2528.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IEL52.900e-16471.04Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QM712.220e-9346.97Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2V3IEL32.630e-7966.09Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036423Superoxide dismutase-like, copper/zinc binding domain superfamilyGENE3D2.60.40.200Superoxide dismutase, copper/zinc binding domaincoord: 22..169
e-value: 3.1E-9
score: 38.7
IPR036423Superoxide dismutase-like, copper/zinc binding domain superfamilySUPERFAMILY49329Cu,Zn superoxide dismutase-likecoord: 26..161
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..520
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..22

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:586646..589576 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2528.t1Ggra2528.t1Gracilaria gracilis GNS1m malemRNAtig00000005_pilon 586646..589576 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2528.t1 ID=Ggra2528.t1|Name=Ggra2528.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=521bp
MHFASCIVIVIACYCVNSVAFAEPVTAAAVIHEEDGTWGSVVFHQWTKTT
PVVVSMLFQNLKIHEMVPVNYQIWDEPVHYDWYSREDRCGKKALKTMMSV
KGNWVGDLGMRHRLMKSDRFAEVLYDKKLSLYEGEEHSIIGKTFVIKQGA
GESSYSCATIYASKLHSQRPGAIPCEVKLYPDCVVGAIEDEATIAFHVSV
RKSNVAFLRRFLNRIYHEDNLYLVDYAPPLQSDDFAGFLNAENVHHRLAD
PFVENGVSEVINILDGMAFFLDREDNLGLPENSFDYYIHCTPDYYPVLNP
THIRKVLSAYKGKQPPPNYLHFFHDSQLPLFANEINHVVFDFSLAFNRSL
LPTTELHRLRITHPDYKKRRMEFPRAVKRFVVNHAFVELAADSILSKRLL
LTLGDTAHVDERFFAALVANNKADIGKVIHSTSLQCVNSNAIDAAVKGSL
PDFSPKPITLDFLRSTSEPCLFAGPFAKTNDVMLMSIDKELLIPPGTQGK
PSGLGYHDDVYEKLQKVIGI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036423SOD-like_Cu/Zn_dom_sf