Ggra2528.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2528.t1
Unique NameGgra2528.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length521
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:586646..589576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708324.1
PFAMsBranch
Max annot lvl2759|Eukaryota
KEGG koko:K00742,ko:K00771,ko:K02836,ko:K14763,ko:K20891
KEGG ReactionR05925,R06189
KEGG Pathwayko00532,ko00534,ko00601,ko01100,map00532,map00534,map00601,map01100
KEGG ModuleM00057
GOsGO:0000139,GO:0000902,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006029,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009826,GO:0009987,GO:0010033,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0015012,GO:0015020,GO:0016020,GO:0016043,GO:0016049,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0022008,GO:0030154,GO:0030166,GO:0030201,GO:0031090,GO:0031344,GO:0031345,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032989,GO:0034097,GO:0034645,GO:0040007,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048589,GO:0048679,GO:0048681,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050650,GO:0050654,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051960,GO:0051961,GO:0060284,GO:0060560,GO:0065007,GO:0070555,GO:0070570,GO:0070571,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0098588,GO:0098791,GO:0120035,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903034,GO:1903035,GO:2000026
Evalue4.13e-10
EggNOG OGsKOG0799@1|root,KOG0799@2759|Eukaryota
EC2.4.1.150,2.4.2.26
Descriptionacetylglucosaminyltransferase activity
COG categoryO
CAZyGT14
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko03009,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2528Ggra2528Gracilaria gracilis GNS1m malegenetig00000005_pilon 586646..589576 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2528.t1Ggra2528.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 586646..589576 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2528.t1.stop1Ggra2528.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 586646..586648 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2528.t1.CDS1Ggra2528.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 586646..587637 -
Ggra2528.t1.CDS2Ggra2528.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000005_pilon 588935..589319 -
Ggra2528.t1.CDS3Ggra2528.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000005_pilon 589391..589576 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2528.t1.exon1Ggra2528.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 586646..587637 -
Ggra2528.t1.exon2Ggra2528.t1.exon2Gracilaria gracilis GNS1m maleexontig00000005_pilon 588935..589319 -
Ggra2528.t1.exon3Ggra2528.t1.exon3Gracilaria gracilis GNS1m maleexontig00000005_pilon 589391..589576 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2528.t1.intron1Ggra2528.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000005_pilon 587638..588934 -
Ggra2528.t1.intron2Ggra2528.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000005_pilon 589320..589390 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2528.t1.start1Ggra2528.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 589574..589576 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2528.t1 ID=Ggra2528.t1|Name=Ggra2528.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=521bp
MHFASCIVIVIACYCVNSVAFAEPVTAAAVIHEEDGTWGSVVFHQWTKTT
PVVVSMLFQNLKIHEMVPVNYQIWDEPVHYDWYSREDRCGKKALKTMMSV
KGNWVGDLGMRHRLMKSDRFAEVLYDKKLSLYEGEEHSIIGKTFVIKQGA
GESSYSCATIYASKLHSQRPGAIPCEVKLYPDCVVGAIEDEATIAFHVSV
RKSNVAFLRRFLNRIYHEDNLYLVDYAPPLQSDDFAGFLNAENVHHRLAD
PFVENGVSEVINILDGMAFFLDREDNLGLPENSFDYYIHCTPDYYPVLNP
THIRKVLSAYKGKQPPPNYLHFFHDSQLPLFANEINHVVFDFSLAFNRSL
LPTTELHRLRITHPDYKKRRMEFPRAVKRFVVNHAFVELAADSILSKRLL
LTLGDTAHVDERFFAALVANNKADIGKVIHSTSLQCVNSNAIDAAVKGSL
PDFSPKPITLDFLRSTSEPCLFAGPFAKTNDVMLMSIDKELLIPPGTQGK
PSGLGYHDDVYEKLQKVIGI*
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spliced messenger RNA

>Ggra2528.t1 ID=Ggra2528.t1|Name=Ggra2528.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1563bp|location=Sequence derived from alignment at tig00000005_pilon:586646..589576- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTTCGCAAGTTGCATCGTTATTGTTATAGCATGTTATTGTGTGAA
CTCTGTCGCGTTCGCCGAACCAGTGACTGCGGCTGCAGTCATCCACGAGG
AAGATGGGACATGGGGCTCGGTTGTATTTCATCAGTGGACAAAAACAACG
CCTGTGGTGGTTTCAATGTTATTCCAGAACTTAAAGATACATGAGATGGT
TCCTGTCAATTATCAGATATGGGATGAGCCAGTACACTACGATTGGTATT
CTCGAGAGGATAGATGTGGGAAAAAAGCACTGAAGACAATGATGAGTGTG
AAAGGAAATTGGGTTGGCGATTTAGGAATGCGCCATCGATTAATGAAATC
CGATCGTTTTGCTGAAGTTCTGTACGATAAAAAGCTTTCGCTTTATGAAG
GCGAAGAACATAGTATCATTGGCAAGACGTTCGTGATCAAACAGGGAGCG
GGTGAGAGTTCGTACAGTTGTGCAACGATCTACGCTTCAAAACTGCACAG
TCAAAGACCTGGAGCAATTCCATGTGAGGTTAAGCTATATCCTGATTGTG
TTGTGGGGGCGATTGAAGATGAAGCAACTATCGCATTTCATGTGAGCGTG
AGAAAATCGAACGTGGCCTTTCTTCGGAGGTTTCTCAATCGAATATATCA
CGAGGATAACTTGTATCTTGTTGATTATGCTCCACCATTACAATCTGACG
ATTTCGCCGGTTTCCTCAACGCGGAAAATGTACATCACCGACTAGCAGAT
CCCTTTGTGGAGAACGGAGTTTCTGAAGTTATAAATATTTTAGATGGTAT
GGCGTTCTTCCTCGACCGTGAGGACAATCTTGGCCTTCCGGAGAATTCGT
TTGACTACTACATCCATTGCACACCTGATTATTATCCTGTTTTGAACCCC
ACTCACATTCGGAAGGTCCTTTCGGCTTACAAGGGGAAGCAACCTCCTCC
TAACTACCTTCACTTCTTTCATGATTCACAATTACCGTTGTTTGCAAACG
AGATTAACCATGTTGTGTTTGATTTCTCTCTCGCCTTCAATCGGAGTCTA
CTGCCAACGACAGAACTGCATCGGCTGAGGATTACGCATCCAGATTACAA
GAAGCGAAGAATGGAATTTCCACGCGCAGTGAAGCGTTTTGTTGTGAATC
ATGCCTTTGTAGAGCTTGCCGCCGATTCTATATTGTCTAAACGTTTGCTT
TTGACATTAGGAGATACTGCACATGTTGATGAGCGGTTTTTTGCAGCTCT
AGTTGCGAATAACAAAGCGGATATCGGCAAGGTGATACATTCAACTTCGT
TACAATGCGTCAACTCAAACGCTATAGACGCAGCAGTGAAGGGTTCACTG
CCAGACTTTAGTCCAAAGCCGATAACGTTAGACTTTCTGCGGAGCACTTC
AGAACCATGCCTATTTGCTGGACCGTTTGCCAAAACAAATGATGTGATGC
TCATGAGCATTGACAAGGAACTGCTAATTCCTCCAGGGACTCAAGGGAAA
CCGAGCGGTCTCGGTTATCACGATGATGTATACGAAAAGCTACAAAAGGT
GATTGGCATATAA
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protein sequence of Ggra2528.t1

>Ggra2528.t1 ID=Ggra2528.t1|Name=Ggra2528.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=521bp
MHFASCIVIVIACYCVNSVAFAEPVTAAAVIHEEDGTWGSVVFHQWTKTT
PVVVSMLFQNLKIHEMVPVNYQIWDEPVHYDWYSREDRCGKKALKTMMSV
KGNWVGDLGMRHRLMKSDRFAEVLYDKKLSLYEGEEHSIIGKTFVIKQGA
GESSYSCATIYASKLHSQRPGAIPCEVKLYPDCVVGAIEDEATIAFHVSV
RKSNVAFLRRFLNRIYHEDNLYLVDYAPPLQSDDFAGFLNAENVHHRLAD
PFVENGVSEVINILDGMAFFLDREDNLGLPENSFDYYIHCTPDYYPVLNP
THIRKVLSAYKGKQPPPNYLHFFHDSQLPLFANEINHVVFDFSLAFNRSL
LPTTELHRLRITHPDYKKRRMEFPRAVKRFVVNHAFVELAADSILSKRLL
LTLGDTAHVDERFFAALVANNKADIGKVIHSTSLQCVNSNAIDAAVKGSL
PDFSPKPITLDFLRSTSEPCLFAGPFAKTNDVMLMSIDKELLIPPGTQGK
PSGLGYHDDVYEKLQKVIGI*
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mRNA from alignment at tig00000005_pilon:586646..589576-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2528.t1 ID=Ggra2528.t1|Name=Ggra2528.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2931bp|location=Sequence derived from alignment at tig00000005_pilon:586646..589576- (Gracilaria gracilis GNS1m male)
ATGCATTTCGCAAGTTGCATCGTTATTGTTATAGCATGTTATTGTGTGAA
CTCTGTCGCGTTCGCCGAACCAGTGACTGCGGCTGCAGTCATCCACGAGG
AAGATGGGACATGGGGCTCGGTTGTATTTCATCAGTGGACAAAAACAACG
CCTGTGGTGGTTTCAATGTTATTCCAGAACTTAAAGGTTAGTTTCCTTCT
CTTAAGTCCACGGTTTCGAGGGAGGCTCATGGGTCTAACATTTTATTCAT
ATTTCAGATACATGAGATGGTTCCTGTCAATTATCAGATATGGGATGAGC
CAGTACACTACGATTGGTATTCTCGAGAGGATAGATGTGGGAAAAAAGCA
CTGAAGACAATGATGAGTGTGAAAGGAAATTGGGTTGGCGATTTAGGAAT
GCGCCATCGATTAATGAAATCCGATCGTTTTGCTGAAGTTCTGTACGATA
AAAAGCTTTCGCTTTATGAAGGCGAAGAACATAGTATCATTGGCAAGACG
TTCGTGATCAAACAGGGAGCGGGTGAGAGTTCGTACAGTTGTGCAACGAT
CTACGCTTCAAAACTGCACAGTCAAAGACCTGGAGCAATTCCATGTGAGG
TTAAGCTATATCCTGATTGTGTTGTGGGGGCGATTGAAGATGGTAAGTGT
ACGGAGAGAAGTTGTTATGGATATCGACAATACTGGGGTGTGATTGACGA
GAACACCCAGATGTGTGCACAGGTAAGAGAAGTTTATCCAAGACGTTTGG
AAGGAAGTAGAAATAAGGACGCTGTGTTTCCTTGCAAGTACGGGAACCAT
ACTTTGCTAAGACCGATAGATAGGAAGGACCATTTACTATGAGTGAATGT
CGTGCACTTATGAAGTTTCGCCTTGTGTGGCATTGCGGGCAAGTCCTTGC
GATCCAACTTAGAAAGTGCGCTTCGTCGTGTGTGCATTTCGTCTTTCTCT
GGCGCCCCGACAGTGGCTCTTACAACGTATCCAAGAGTCCTCATTCATTG
ATAAAAAGATGTGTGTGAGCTTCCGCGATTGACATCTTTCAACACATTGC
CTGTGTGCCCCACCCCTCGGCTGGTGCAGAAACAGAGTCTGCAGAACGGT
AAATCAATACTGTATGTTCTCTTTTTGGCGCAAGTGAAGTAAAAGGTCAA
ACATTCGGTTGACCTTGATTCTTCTTATCATGGCGGCATATGTGTAGCCT
TCAGCGACGAACAAAGGGCTCATTCGAACATTCGCTGAAAAGTGAAGCTT
GAGTGGGTTTCTTTGCTTTAACGGCTTTTCTTGTCGTAGAGCGACGAACG
GTCCAGCAGTACGCAGAGAGAGCACAACAGAAAACTATCTCCCGAAGAAG
AGGGGTCGAATTACTGTACGAGAGATAGATGATGATAATGAAGGATGTGA
ACCTTTTCGCTACAGGTGCATCCTTGGGTATCATAAATGAGAGATCCTTG
CGTAGGGCTTCAGCTTTTTTAGCTCTACAACACTTTTTCAACCCCGTACA
GTTTACGGCGTAAACGCTATCTACCTTCGGTATCTACGACGAAAGAAAAC
ATGGGCCCAGGCTGAGAGGGCCCATATTTTCTTTCGTCTCCATCGTTTTC
AATGCTGGATTTTTGCATATCTTTTTTTTTGCGAAGGAACCAAATCACAC
AAACGAACCAAACCACACAAACGAACCAAACCCGAATAGGAAGGTCTTGC
CTTTTCTTGAAAGTCACTTTCGTTCCTTCTTCTTCTCCTTCTTGACAGAG
TTTTGTCGACCACCCCATCTCGAAGAGGTTATTCTTACCCTTGGTATGAC
GCAAGATCTTGTTCCCTTCACAGACGAATACACTTTCGAAATATGTCAAA
GTTTCAGTCAAGAGCTTGTGTGATGCTTGTGCTTCTGTGTTGTGCGAGTA
TGGTCTCTTATTCCCTCGAGAGTAGGTTTCCGCAAACAGAAGCAACTATC
GCATTTCATGTGAGCGTGAGAAAATCGAACGTGGCCTTTCTTCGGAGGTT
TCTCAATCGAATATATCACGAGGATAACTTGTATCTTGTTGATTATGCTC
CACCATTACAATCTGACGATTTCGCCGGTTTCCTCAACGCGGAAAATGTA
CATCACCGACTAGCAGATCCCTTTGTGGAGAACGGAGTTTCTGAAGTTAT
AAATATTTTAGATGGTATGGCGTTCTTCCTCGACCGTGAGGACAATCTTG
GCCTTCCGGAGAATTCGTTTGACTACTACATCCATTGCACACCTGATTAT
TATCCTGTTTTGAACCCCACTCACATTCGGAAGGTCCTTTCGGCTTACAA
GGGGAAGCAACCTCCTCCTAACTACCTTCACTTCTTTCATGATTCACAAT
TACCGTTGTTTGCAAACGAGATTAACCATGTTGTGTTTGATTTCTCTCTC
GCCTTCAATCGGAGTCTACTGCCAACGACAGAACTGCATCGGCTGAGGAT
TACGCATCCAGATTACAAGAAGCGAAGAATGGAATTTCCACGCGCAGTGA
AGCGTTTTGTTGTGAATCATGCCTTTGTAGAGCTTGCCGCCGATTCTATA
TTGTCTAAACGTTTGCTTTTGACATTAGGAGATACTGCACATGTTGATGA
GCGGTTTTTTGCAGCTCTAGTTGCGAATAACAAAGCGGATATCGGCAAGG
TGATACATTCAACTTCGTTACAATGCGTCAACTCAAACGCTATAGACGCA
GCAGTGAAGGGTTCACTGCCAGACTTTAGTCCAAAGCCGATAACGTTAGA
CTTTCTGCGGAGCACTTCAGAACCATGCCTATTTGCTGGACCGTTTGCCA
AAACAAATGATGTGATGCTCATGAGCATTGACAAGGAACTGCTAATTCCT
CCAGGGACTCAAGGGAAACCGAGCGGTCTCGGTTATCACGATGATGTATA
CGAAAAGCTACAAAAGGTGATTGGCATATAA
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Coding sequence (CDS) from alignment at tig00000005_pilon:586646..589576-

>Ggra2528.t1 ID=Ggra2528.t1|Name=Ggra2528.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1563bp|location=Sequence derived from alignment at tig00000005_pilon:586646..589576- (Gracilaria gracilis GNS1m male)
ATGCATTTCGCAAGTTGCATCGTTATTGTTATAGCATGTTATTGTGTGAA
CTCTGTCGCGTTCGCCGAACCAGTGACTGCGGCTGCAGTCATCCACGAGG
AAGATGGGACATGGGGCTCGGTTGTATTTCATCAGTGGACAAAAACAACG
CCTGTGGTGGTTTCAATGTTATTCCAGAACTTAAAGATACATGAGATGGT
TCCTGTCAATTATCAGATATGGGATGAGCCAGTACACTACGATTGGTATT
CTCGAGAGGATAGATGTGGGAAAAAAGCACTGAAGACAATGATGAGTGTG
AAAGGAAATTGGGTTGGCGATTTAGGAATGCGCCATCGATTAATGAAATC
CGATCGTTTTGCTGAAGTTCTGTACGATAAAAAGCTTTCGCTTTATGAAG
GCGAAGAACATAGTATCATTGGCAAGACGTTCGTGATCAAACAGGGAGCG
GGTGAGAGTTCGTACAGTTGTGCAACGATCTACGCTTCAAAACTGCACAG
TCAAAGACCTGGAGCAATTCCATGTGAGGTTAAGCTATATCCTGATTGTG
TTGTGGGGGCGATTGAAGATGAAGCAACTATCGCATTTCATGTGAGCGTG
AGAAAATCGAACGTGGCCTTTCTTCGGAGGTTTCTCAATCGAATATATCA
CGAGGATAACTTGTATCTTGTTGATTATGCTCCACCATTACAATCTGACG
ATTTCGCCGGTTTCCTCAACGCGGAAAATGTACATCACCGACTAGCAGAT
CCCTTTGTGGAGAACGGAGTTTCTGAAGTTATAAATATTTTAGATGGTAT
GGCGTTCTTCCTCGACCGTGAGGACAATCTTGGCCTTCCGGAGAATTCGT
TTGACTACTACATCCATTGCACACCTGATTATTATCCTGTTTTGAACCCC
ACTCACATTCGGAAGGTCCTTTCGGCTTACAAGGGGAAGCAACCTCCTCC
TAACTACCTTCACTTCTTTCATGATTCACAATTACCGTTGTTTGCAAACG
AGATTAACCATGTTGTGTTTGATTTCTCTCTCGCCTTCAATCGGAGTCTA
CTGCCAACGACAGAACTGCATCGGCTGAGGATTACGCATCCAGATTACAA
GAAGCGAAGAATGGAATTTCCACGCGCAGTGAAGCGTTTTGTTGTGAATC
ATGCCTTTGTAGAGCTTGCCGCCGATTCTATATTGTCTAAACGTTTGCTT
TTGACATTAGGAGATACTGCACATGTTGATGAGCGGTTTTTTGCAGCTCT
AGTTGCGAATAACAAAGCGGATATCGGCAAGGTGATACATTCAACTTCGT
TACAATGCGTCAACTCAAACGCTATAGACGCAGCAGTGAAGGGTTCACTG
CCAGACTTTAGTCCAAAGCCGATAACGTTAGACTTTCTGCGGAGCACTTC
AGAACCATGCCTATTTGCTGGACCGTTTGCCAAAACAAATGATGTGATGC
TCATGAGCATTGACAAGGAACTGCTAATTCCTCCAGGGACTCAAGGGAAA
CCGAGCGGTCTCGGTTATCACGATGATGTATACGAAAAGCTACAAAAGGT
GATTGGCATATAA
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