Ggra2479.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2479.t1
Unique NameGgra2479.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length344
Homology
BLAST of Ggra2479.t1 vs. uniprot
Match: A0A2V3IXZ2 (Fatty acid amide hydrolase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXZ2_9FLOR)

HSP 1 Score: 220 bits (561), Expect = 2.240e-63
Identity = 133/256 (51.95%), Postives = 165/256 (64.45%), Query Frame = 0
Query:    7 PESAGTEVEGPNLHDLSFPSLSGLALRAAAYMLEQPYLGALPRHFALRSSAI--HRARHPSDVDCLPSIPNHPLPSPAVSPPQTRDLDQFFYDLT-PNVPHRGAPISLAYLHHAYSTALSTPSLVVSAMEMMIVESNALQPPLNALRAVEIGRLQDDIQASVAIWASGRPRSVLDGAPFSVKYCVDVAKLPSSIATRHAPVFPEYNATVMAALRRSGMNPITSVLWGKAGNGKR--TQTAPAATHPRCSALLPIGA 257
            PES   E+     HDL  P LSG+ALRAAAY LE P+LGALPR   LRSS+I   RA++PS    LP+ P HP P+   + P+T DL+Q FY LT PN P R   +SLA LHHAY+TA STP+LVVS +E +I ESN  +PPLNALR+     LQ +IQAS   WA+GRPRSVLDGAPFS K+C+D+A LPSS  TRH       +A V++ALR+ GM PIT     +   G R  +Q A +  +P      P G+
Sbjct:   11 PESTVLEI-----HDLRAPPLSGIALRAAAYTLELPWLGALPRKLLLRSSSILVWRAQNPSTSRSLPTFPTHPPPTSKSAKPETSDLNQLFYTLTSPNPPQRDH-LSLACLHHAYATASSTPTLVVSTLERLIEESNRTEPPLNALRSPPPEHLQTEIQASTERWAAGRPRSVLDGAPFSAKFCIDIAGLPSSGGTRHEFTIATNDAPVVSALRQLGMLPITKSNQDELALGTRGLSQGAGSVRNPHNPLHCPGGS 260          
BLAST of Ggra2479.t1 vs. uniprot
Match: A0A2D4BVR1 (Calpain catalytic domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BVR1_PYTIN)

HSP 1 Score: 63.9 bits (154), Expect = 2.120e-7
Identity = 64/233 (27.47%), Postives = 98/233 (42.06%), Query Frame = 0
Query:   16 GPNLHDLSFPSLSGLALRAAAYMLEQPYLGALPRHFALRSSAIHRARHPSDVDCLPSIPNHPLPSPAVSPPQTR---------DLDQFFYDLTPNVPHRGAPI-SLAYLHHAYSTALSTPSLVVSAMEMMIVESNALQPPLNALRAVEIGRLQDDIQASVAIWASGRPRSVLDGAPFSVKYCVDVAKLPSSIATRHAPV---FPEYNATVMAALRRSGMNPITSVLWGKAGNG 235
            G +L +L+ P L+GL LRA A+++ QP LG +  +   + + +   R  +       IP+ PL  P V PP+           DLD F    T +         S+A     Y++   +P  V  A+   I ES   + PL          +    +AS   WA G+P  VLDG P +VK  + V    +S  T   P        +A  +A LR +G   + +    + G G
Sbjct:  883 GYDLVELAAPRLTGLPLRALAWLIRQPVLGRIIANVLYKDNRMLEIRRLASF-----IPDQPLYYPFVDPPRDAVTSEPETPLDLDAFAKQSTSDKASTSFKHWSIADYTSRYASHELSPVQVAKAVLAAIEESEKGEYPLRIFIEKHDDEILGQARASAKRWAEGKPLGVLDGVPVAVKDQIAVRGHNTSFGTTFLPEEQGAAHQDAVPIARLRAAGAIIVGTTNMQELGTG 1110          
BLAST of Ggra2479.t1 vs. uniprot
Match: A0A7V2LMT8 (Amidase n=1 Tax=Caldilineae bacterium TaxID=2420332 RepID=A0A7V2LMT8_9CHLR)

HSP 1 Score: 58.5 bits (140), Expect = 8.350e-6
Identity = 64/232 (27.59%), Postives = 96/232 (41.38%), Query Frame = 0
Query:   18 NLHDLSFPSLSGLALRAAAYMLEQPYLGALPRHFALRSSAIHRARHP---SDVDCLP------------SIPNHPLP-SPAVSPPQTRDLDQFFYDLTPNVPHRGAPISLAYLHHAYSTALSTPSLVVSAMEMMIVESNALQPPLNALRAVEIGRLQDDIQASVAIWASGRPRSVLDGAPFSVKYCVDVAKLPSSIATRHAPVFP-EYNATVMAALRRSGMNPITSVLWGKA 232
            +L  +  P LSG  LR    +LE P  G L  +  L S+ +   R      D    P            S+P+  LP S AV+ P  R    F Y                    AY    + P  V   +   I  S+A +PPL A+ AV+   +    +AS     +GR RSV +G P ++K  +D+   P+++ T      P   +AT +A +R +G     ++L GKA
Sbjct:   11 DLESVQLPYLSGFPLRLIVGLLESPLRGLLLPNL-LESAGVKSLRKQHFDEDPTFQPIAYRGILATAAGSVPDEALPRSAAVAGPGFRFPSTFDYA------------------QAYRQGQTNPVEVAERVLAAIAASDAAEPPLRAIIAVDTDDVMRQAEASAERLRNGRARSVFEGVPVAIKDELDMVPYPTTVGTAFLGTAPVTEDATAVARMRAAG-----ALLIGKA 218          
The following BLAST results are available for this feature:
BLAST of Ggra2479.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IXZ22.240e-6351.95Fatty acid amide hydrolase n=1 Tax=Gracilariopsis ... [more]
A0A2D4BVR12.120e-727.47Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A7V2LMT88.350e-627.59Amidase n=1 Tax=Caldilineae bacterium TaxID=242033... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036928Amidase signature (AS) superfamilyGENE3D3.90.1300.10Amidase signature (AS) domaincoord: 113..246
e-value: 2.7E-10
score: 41.9
IPR036928Amidase signature (AS) superfamilySUPERFAMILY75304Amidase signature (AS) enzymescoord: 110..225
IPR023631Amidase signature domainPFAMPF01425Amidasecoord: 139..224
e-value: 2.0E-5
score: 23.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 237..343
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 307..329

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:435908..436939 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2479.t1Ggra2479.t1Gracilaria gracilis GNS1m malemRNAtig00000005_pilon 435908..436939 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2479.t1 ID=Ggra2479.t1|Name=Ggra2479.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=344bp
MSVDATPESAGTEVEGPNLHDLSFPSLSGLALRAAAYMLEQPYLGALPRH
FALRSSAIHRARHPSDVDCLPSIPNHPLPSPAVSPPQTRDLDQFFYDLTP
NVPHRGAPISLAYLHHAYSTALSTPSLVVSAMEMMIVESNALQPPLNALR
AVEIGRLQDDIQASVAIWASGRPRSVLDGAPFSVKYCVDVAKLPSSIATR
HAPVFPEYNATVMAALRRSGMNPITSVLWGKAGNGKRTQTAPAATHPRCS
ALLPIGAEQWQNPPMRPTRAGRNSEQPLPDLQTEVGGGNRVANRMDSTGC
GVSPSKRDETEGSKMSRTAEHRLVRAGNNPETKRGKPVQQGEV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036928AS_sf
IPR023631Amidase_dom