Ggra2479.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2479.t1
Unique Name	Ggra2479.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	344

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:435908..436939 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	448385.sce0116
PFAMs	Amidase
Max annot lvl	28221\|Deltaproteobacteria
Evalue	4.56e-07
EggNOG OGs	COG0154@1\|root,COG0154@2\|Bacteria,1MW3Z@1224\|Proteobacteria,42Z6J@68525\|delta/epsilon subdivisions,2WUD7@28221\|Deltaproteobacteria,2YWHK@29\|Myxococcales
Description	Amidase
COG category	J

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2479	Ggra2479	Gracilaria gracilis GNS1m male	gene	tig00000005_pilon 435908..436939 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2479.t1.start1	Ggra2479.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000005_pilon 435908..435910 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2479.t1.CDS1	Ggra2479.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000005_pilon 435908..436939 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2479.t1.exon1	Ggra2479.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000005_pilon 435908..436939 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2479.t1.stop1	Ggra2479.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000005_pilon 436937..436939 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2479.t1	Ggra2479.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000005_pilon 435908..436939 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000005_pilon:435908..436939+
coding sequence from alignment at tig00000005_pilon:435908..436939+

mRNA sequence

>Ggra2479.t1 ID=Ggra2479.t1|Name=Ggra2479.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=344bp
MSVDATPESAGTEVEGPNLHDLSFPSLSGLALRAAAYMLEQPYLGALPRH
FALRSSAIHRARHPSDVDCLPSIPNHPLPSPAVSPPQTRDLDQFFYDLTP
NVPHRGAPISLAYLHHAYSTALSTPSLVVSAMEMMIVESNALQPPLNALR
AVEIGRLQDDIQASVAIWASGRPRSVLDGAPFSVKYCVDVAKLPSSIATR
HAPVFPEYNATVMAALRRSGMNPITSVLWGKAGNGKRTQTAPAATHPRCS
ALLPIGAEQWQNPPMRPTRAGRNSEQPLPDLQTEVGGGNRVANRMDSTGC
GVSPSKRDETEGSKMSRTAEHRLVRAGNNPETKRGKPVQQGEV*

spliced messenger RNA

>Ggra2479.t1 ID=Ggra2479.t1|Name=Ggra2479.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1032bp|location=Sequence derived from alignment at tig00000005_pilon:435908..436939+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atgtctgttgacgcaacgcccgagagcgctggaactgaagtcgaggggcc
gaatctccatgatctcagctttccatccttgtctggccttgctctacggg
cagctgcttacatgctagaacagccatacctcggtgctctgccccgccac
ttcgcccttcgttcttccgccattcaccgtgctcgccacccctccgatgt
agattgtctgccgtctattccgaaccatccgctaccgtcaccagctgttt
cgccaccacagacgagagatcttgatcagttcttctatgatctgacgccc
aatgttccgcatcgcggtgcgcccatctcacttgcatatttgcaccatgc
gtattcaacggcgctttctacaccttctcttgtggtttccgcaatggaaa
tgatgatagttgaatcgaacgcactacaaccgccgctgaatgccttgcga
gctgtcgaaattggtaggttgcaggatgacattcaggcatcggtggcgat
atgggcatccggacggcctcgttcagttctggacggggctccattttctg
taaagtactgcgttgatgtcgcgaaacttccgtcatctatcgcaactcga
cacgcacccgtctttcctgaatacaatgcaacggtaatggccgctctgag
acgttcaggaatgaatccgattacctccgtcttgtggggcaaagccggga
acggaaaaagaacacaaaccgcgccagcggctacgcacccaaggtgttca
gccttgctccctattggggcagagcagtggcagaaccctccgatgaggcc
gacacgtgccgggcgtaactccgagcagcctcttcctgacttacagacgg
aggttgggggtggcaatcgggttgccaacaggatggattccactgggtgt
ggcgtatcccctagcaaaagggacgagacagaaggtagcaaaatgagccg
cactgcggagcacagactcgtgagagctgggaataatcccgagacaaaaa
ggggcaaacctgtacaacagggcgaagtgtag

protein sequence of Ggra2479.t1

>Ggra2479.t1 ID=Ggra2479.t1|Name=Ggra2479.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=344bp
MSVDATPESAGTEVEGPNLHDLSFPSLSGLALRAAAYMLEQPYLGALPRH
FALRSSAIHRARHPSDVDCLPSIPNHPLPSPAVSPPQTRDLDQFFYDLTP
NVPHRGAPISLAYLHHAYSTALSTPSLVVSAMEMMIVESNALQPPLNALR
AVEIGRLQDDIQASVAIWASGRPRSVLDGAPFSVKYCVDVAKLPSSIATR
HAPVFPEYNATVMAALRRSGMNPITSVLWGKAGNGKRTQTAPAATHPRCS
ALLPIGAEQWQNPPMRPTRAGRNSEQPLPDLQTEVGGGNRVANRMDSTGC
GVSPSKRDETEGSKMSRTAEHRLVRAGNNPETKRGKPVQQGEV*

mRNA from alignment at tig00000005_pilon:435908..436939+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2479.t1 ID=Ggra2479.t1|Name=Ggra2479.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1032bp|location=Sequence derived from alignment at tig00000005_pilon:435908..436939+ (Gracilaria gracilis GNS1m male)
atgtctgttgacgcaacgcccgagagcgctggaactgaagtcgaggggcc
gaatctccatgatctcagctttccatccttgtctggccttgctctacggg
cagctgcttacatgctagaacagccatacctcggtgctctgccccgccac
ttcgcccttcgttcttccgccattcaccgtgctcgccacccctccgatgt
agattgtctgccgtctattccgaaccatccgctaccgtcaccagctgttt
cgccaccacagacgagagatcttgatcagttcttctatgatctgacgccc
aatgttccgcatcgcggtgcgcccatctcacttgcatatttgcaccatgc
gtattcaacggcgctttctacaccttctcttgtggtttccgcaatggaaa
tgatgatagttgaatcgaacgcactacaaccgccgctgaatgccttgcga
gctgtcgaaattggtaggttgcaggatgacattcaggcatcggtggcgat
atgggcatccggacggcctcgttcagttctggacggggctccattttctg
taaagtactgcgttgatgtcgcgaaacttccgtcatctatcgcaactcga
cacgcacccgtctttcctgaatacaatgcaacggtaatggccgctctgag
acgttcaggaatgaatccgattacctccgtcttgtggggcaaagccggga
acggaaaaagaacacaaaccgcgccagcggctacgcacccaaggtgttca
gccttgctccctattggggcagagcagtggcagaaccctccgatgaggcc
gacacgtgccgggcgtaactccgagcagcctcttcctgacttacagacgg
aggttgggggtggcaatcgggttgccaacaggatggattccactgggtgt
ggcgtatcccctagcaaaagggacgagacagaaggtagcaaaatgagccg
cactgcggagcacagactcgtgagagctgggaataatcccgagacaaaaa
ggggcaaacctgtacaacagggcgaagtgtag

Coding sequence (CDS) from alignment at tig00000005_pilon:435908..436939+

>Ggra2479.t1 ID=Ggra2479.t1|Name=Ggra2479.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1032bp|location=Sequence derived from alignment at tig00000005_pilon:435908..436939+ (Gracilaria gracilis GNS1m male)
atgtctgttgacgcaacgcccgagagcgctggaactgaagtcgaggggcc
gaatctccatgatctcagctttccatccttgtctggccttgctctacggg
cagctgcttacatgctagaacagccatacctcggtgctctgccccgccac
ttcgcccttcgttcttccgccattcaccgtgctcgccacccctccgatgt
agattgtctgccgtctattccgaaccatccgctaccgtcaccagctgttt
cgccaccacagacgagagatcttgatcagttcttctatgatctgacgccc
aatgttccgcatcgcggtgcgcccatctcacttgcatatttgcaccatgc
gtattcaacggcgctttctacaccttctcttgtggtttccgcaatggaaa
tgatgatagttgaatcgaacgcactacaaccgccgctgaatgccttgcga
gctgtcgaaattggtaggttgcaggatgacattcaggcatcggtggcgat
atgggcatccggacggcctcgttcagttctggacggggctccattttctg
taaagtactgcgttgatgtcgcgaaacttccgtcatctatcgcaactcga
cacgcacccgtctttcctgaatacaatgcaacggtaatggccgctctgag
acgttcaggaatgaatccgattacctccgtcttgtggggcaaagccggga
acggaaaaagaacacaaaccgcgccagcggctacgcacccaaggtgttca
gccttgctccctattggggcagagcagtggcagaaccctccgatgaggcc
gacacgtgccgggcgtaactccgagcagcctcttcctgacttacagacgg
aggttgggggtggcaatcgggttgccaacaggatggattccactgggtgt
ggcgtatcccctagcaaaagggacgagacagaaggtagcaaaatgagccg
cactgcggagcacagactcgtgagagctgggaataatcccgagacaaaaa
ggggcaaacctgtacaacagggcgaagtgtag