Ggra2407.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra2407.t1
Unique Name	Ggra2407.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	428

Homology

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BLAST of Ggra2407.t1 vs. uniprot
Match: A0A2V3IUN3 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUN3_9FLOR)

HSP 1 Score: 368 bits (945), Expect = 8.220e-122
Identity = 222/397 (55.92%), Postives = 275/397 (69.27%), Query Frame = 0

Query:    1 MAPSS--KLPDLHQRVYIWFDGYDEYYPGRVASLTPPFEFKVILEDGTDWNIDSRKHVYKFSNDDANAQPEPEEEPAKADIPQMSVSKKKDDESEKQVSADDRPEP----------NGAQTRRRAGRALRKNAAPTRIVEPDVASQEDQEAEPRQETENDDYDPKXXXNEPQELPRLRRSARVADEERERRTTRSRTRTIEEPVGLPPRTRKKASAKRTLKPSVEDERAVKRRKPADEPMDQLDDEPIRDEDGAAGLSTKAVTAIAVQAALESAKAVLKPLSDKMASIVNSFTEINTLMKQTTEAAAREAVKKAVTIPEASKGTLAALANFQLDFAEVVGGGEARMKAYTNLSGHEFEHLNRMIEYQGKALKEVERLLYAAKEFGKKTIVEETEAEP 385
            M P S  +LP+++QRV IWFDGYDEYYPGRV S+  P+EF V+LEDGTDW IDSRKHV+KF +       EP E+P      + +V + K+  +                       GAQ RRR GRALRKNA PTR VEPDV  + D+ ++   + + DDY+PK      Q LPRLRRSARVADEERERRTTRSR + I+EPVGLPPRTRK++ +KR  + + +               D       RD+DG AGLSTKAVTAIAV+AALESAKAVLKPLS+KM  IV  F EIN LMKQT E AA++AV+K V  P+ SKGTLAALANF+L+ +E++GGGEAR++A++NLS  EFEHLNR++E+QGKALKE+ERLLYAA+EFGKK ++EE  A P
Sbjct:    1 MTPGSAAELPNVNQRVDIWFDGYDEYYPGRVTSIVAPYEFNVVLEDGTDWTIDSRKHVFKFPD-------EPAEQPQTV---KKTVGRPKNASTXXXXXXXXXXXXXXXXXXXXXNGGAQARRRMGRALRKNATPTRTVEPDVDEEPDEPSDDANQ-DQDDYNPKDDEINDQRLPRLRRSARVADEERERRTTRSRAKPIQEPVGLPPRTRKRSLSKRAPE-TTDXXXXXXXXXXXXXXXDXXXXXVARDDDGMAGLSTKAVTAIAVEAALESAKAVLKPLSEKMTFIVTQFAEINKLMKQTAEDAAKDAVQKVVGKPDESKGTLAALANFKLNISEIIGGGEARIEAFSNLSEQEFEHLNRLVEHQGKALKELERLLYAAREFGKKKVLEEAAAPP 385

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BLAST of Ggra2407.t1 vs. uniprot
Match: R7Q6L3 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6L3_CHOCR)

HSP 1 Score: 108 bits (270), Expect = 7.510e-23
Identity = 67/139 (48.20%), Postives = 95/139 (68.35%), Query Frame = 0

Query:  237 RDEDGAAGLSTKAVTAIAVQAALESAKAVLKPLSDKMASIVNSFTEINTLMKQTTEAAAREAVKKAVTIPEASKGTLAALANFQLDFAEVVGGGEARMKAYTNLSGHEFEHLNRMIEYQGKALKEVERLLYAAKEFGKK 375
            ++E+    LSTKAVTAIAV+AAL SAKAV KPLSD++A++      ++   ++  +    EA +K      +S  + AA A  QLD +E++GGGEAR++AY NLS +EFE+ +++IE Q K LKE +R+L AAKE GKK
Sbjct:  173 KEEESVEKLSTKAVTAIAVEAALASAKAVFKPLSDQLAALRTELENVSEAARRAADEIPLEASRKRRGKSGSSPVSAAADA-LQLDLSELLGGGEARIRAYANLSDNEFENFHKLIEDQRKGLKEFDRILQAAKELGKK 310

The following BLAST results are available for this feature:

BLAST of Ggra2407.t1 vs. uniprot

BLAST of Ggra2407.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3IUN3	8.220e-122	55.92	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
R7Q6L3	7.510e-23	48.20	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 404..424
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..186
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 378..427
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 394..427
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 206..230
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..156
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..243

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:162006..163289 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2407.t1	Ggra2407.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000005_pilon 162006..163289 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra2407.t1 ID=Ggra2407.t1|Name=Ggra2407.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=428bp
MAPSSKLPDLHQRVYIWFDGYDEYYPGRVASLTPPFEFKVILEDGTDWNI
DSRKHVYKFSNDDANAQPEPEEEPAKADIPQMSVSKKKDDESEKQVSADD
RPEPNGAQTRRRAGRALRKNAAPTRIVEPDVASQEDQEAEPRQETENDDY
DPKDDENEPQELPRLRRSARVADEERERRTTRSRTRTIEEPVGLPPRTRK
KASAKRTLKPSVEDERAVKRRKPADEPMDQLDDEPIRDEDGAAGLSTKAV
TAIAVQAALESAKAVLKPLSDKMASIVNSFTEINTLMKQTTEAAAREAVK
KAVTIPEASKGTLAALANFQLDFAEVVGGGEARMKAYTNLSGHEFEHLNR
MIEYQGKALKEVERLLYAAKEFGKKTIVEETEAEPVANQVNGDEKGTSEE
KIKEKDTENEKEKGKEKEKEIEKEGAE*