Ggra2407.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2407.t1
Unique NameGgra2407.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length428
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:162006..163289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2407Ggra2407Gracilaria gracilis GNS1m malegenetig00000005_pilon 162006..163289 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2407.t1.start1Ggra2407.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 162006..162008 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2407.t1.CDS1Ggra2407.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 162006..163289 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2407.t1.exon1Ggra2407.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 162006..163289 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2407.t1.stop1Ggra2407.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 163287..163289 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2407.t1Ggra2407.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 162006..163289 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2407.t1 ID=Ggra2407.t1|Name=Ggra2407.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=428bp
MAPSSKLPDLHQRVYIWFDGYDEYYPGRVASLTPPFEFKVILEDGTDWNI
DSRKHVYKFSNDDANAQPEPEEEPAKADIPQMSVSKKKDDESEKQVSADD
RPEPNGAQTRRRAGRALRKNAAPTRIVEPDVASQEDQEAEPRQETENDDY
DPKDDENEPQELPRLRRSARVADEERERRTTRSRTRTIEEPVGLPPRTRK
KASAKRTLKPSVEDERAVKRRKPADEPMDQLDDEPIRDEDGAAGLSTKAV
TAIAVQAALESAKAVLKPLSDKMASIVNSFTEINTLMKQTTEAAAREAVK
KAVTIPEASKGTLAALANFQLDFAEVVGGGEARMKAYTNLSGHEFEHLNR
MIEYQGKALKEVERLLYAAKEFGKKTIVEETEAEPVANQVNGDEKGTSEE
KIKEKDTENEKEKGKEKEKEIEKEGAE*
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spliced messenger RNA

>Ggra2407.t1 ID=Ggra2407.t1|Name=Ggra2407.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1284bp|location=Sequence derived from alignment at tig00000005_pilon:162006..163289+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCAAGTTCGAAGCTCCCCGACCTCCACCAGCGCGTATACATCTG
GTTCGATGGGTACGATGAGTACTACCCCGGTCGGGTCGCAAGTCTCACCC
CTCCTTTCGAGTTCAAGGTAATCTTGGAAGACGGTACCGATTGGAACATC
GACTCGAGGAAGCACGTTTACAAGTTCTCCAACGACGACGCTAACGCGCA
ACCCGAGCCTGAAGAAGAACCTGCAAAAGCAGACATACCCCAAATGTCCG
TTAGCAAAAAGAAGGATGACGAATCCGAAAAGCAAGTCTCTGCGGATGAC
CGACCCGAACCAAACGGTGCCCAGACCCGTCGCCGTGCTGGTAGAGCTCT
GAGAAAGAACGCTGCACCAACAAGGATTGTCGAGCCTGATGTTGCATCGC
AAGAAGATCAAGAAGCGGAACCCCGACAAGAAACCGAAAACGATGATTAC
GACCCCAAGGATGATGAGAATGAACCGCAGGAACTACCAAGGCTCAGAAG
ATCGGCAAGGGTTGCAGACGAAGAGCGTGAACGCCGCACCACGAGGAGCA
GAACGAGGACCATCGAAGAACCGGTTGGATTGCCGCCTCGGACACGCAAG
AAGGCATCTGCTAAGAGAACACTCAAGCCAAGCGTTGAAGATGAGAGGGC
TGTGAAGAGACGAAAGCCAGCTGATGAACCAATGGACCAGTTAGATGACG
AACCCATCCGTGATGAAGATGGTGCTGCGGGCTTGTCCACAAAAGCGGTC
ACGGCAATTGCTGTTCAAGCTGCCCTAGAAAGCGCCAAAGCAGTGCTCAA
ACCGCTAAGTGATAAAATGGCTTCAATTGTAAACTCATTCACAGAGATTA
ACACTCTCATGAAGCAAACTACGGAGGCTGCAGCACGAGAAGCTGTCAAA
AAGGCGGTAACAATACCCGAAGCATCAAAAGGGACTCTCGCAGCCCTAGC
CAACTTTCAATTAGATTTTGCCGAAGTGGTTGGCGGTGGCGAAGCAAGGA
TGAAGGCATACACGAACTTGAGTGGGCACGAATTCGAGCATTTGAATAGA
ATGATTGAGTATCAAGGCAAGGCACTTAAAGAAGTGGAACGCTTATTGTA
TGCGGCCAAAGAGTTTGGAAAAAAAACGATTGTCGAAGAAACCGAGGCCG
AACCAGTGGCAAACCAGGTGAACGGAGACGAAAAAGGAACATCAGaagag
aagataaaggagaaagacactgaaaatgagaaagaaaagggaaaagaaaa
agaaaaagaaatagaaaaagaaGGGGCCGAATAG
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protein sequence of Ggra2407.t1

>Ggra2407.t1 ID=Ggra2407.t1|Name=Ggra2407.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=428bp
MAPSSKLPDLHQRVYIWFDGYDEYYPGRVASLTPPFEFKVILEDGTDWNI
DSRKHVYKFSNDDANAQPEPEEEPAKADIPQMSVSKKKDDESEKQVSADD
RPEPNGAQTRRRAGRALRKNAAPTRIVEPDVASQEDQEAEPRQETENDDY
DPKDDENEPQELPRLRRSARVADEERERRTTRSRTRTIEEPVGLPPRTRK
KASAKRTLKPSVEDERAVKRRKPADEPMDQLDDEPIRDEDGAAGLSTKAV
TAIAVQAALESAKAVLKPLSDKMASIVNSFTEINTLMKQTTEAAAREAVK
KAVTIPEASKGTLAALANFQLDFAEVVGGGEARMKAYTNLSGHEFEHLNR
MIEYQGKALKEVERLLYAAKEFGKKTIVEETEAEPVANQVNGDEKGTSEE
KIKEKDTENEKEKGKEKEKEIEKEGAE*
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mRNA from alignment at tig00000005_pilon:162006..163289+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2407.t1 ID=Ggra2407.t1|Name=Ggra2407.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1284bp|location=Sequence derived from alignment at tig00000005_pilon:162006..163289+ (Gracilaria gracilis GNS1m male)
ATGGCGCCAAGTTCGAAGCTCCCCGACCTCCACCAGCGCGTATACATCTG
GTTCGATGGGTACGATGAGTACTACCCCGGTCGGGTCGCAAGTCTCACCC
CTCCTTTCGAGTTCAAGGTAATCTTGGAAGACGGTACCGATTGGAACATC
GACTCGAGGAAGCACGTTTACAAGTTCTCCAACGACGACGCTAACGCGCA
ACCCGAGCCTGAAGAAGAACCTGCAAAAGCAGACATACCCCAAATGTCCG
TTAGCAAAAAGAAGGATGACGAATCCGAAAAGCAAGTCTCTGCGGATGAC
CGACCCGAACCAAACGGTGCCCAGACCCGTCGCCGTGCTGGTAGAGCTCT
GAGAAAGAACGCTGCACCAACAAGGATTGTCGAGCCTGATGTTGCATCGC
AAGAAGATCAAGAAGCGGAACCCCGACAAGAAACCGAAAACGATGATTAC
GACCCCAAGGATGATGAGAATGAACCGCAGGAACTACCAAGGCTCAGAAG
ATCGGCAAGGGTTGCAGACGAAGAGCGTGAACGCCGCACCACGAGGAGCA
GAACGAGGACCATCGAAGAACCGGTTGGATTGCCGCCTCGGACACGCAAG
AAGGCATCTGCTAAGAGAACACTCAAGCCAAGCGTTGAAGATGAGAGGGC
TGTGAAGAGACGAAAGCCAGCTGATGAACCAATGGACCAGTTAGATGACG
AACCCATCCGTGATGAAGATGGTGCTGCGGGCTTGTCCACAAAAGCGGTC
ACGGCAATTGCTGTTCAAGCTGCCCTAGAAAGCGCCAAAGCAGTGCTCAA
ACCGCTAAGTGATAAAATGGCTTCAATTGTAAACTCATTCACAGAGATTA
ACACTCTCATGAAGCAAACTACGGAGGCTGCAGCACGAGAAGCTGTCAAA
AAGGCGGTAACAATACCCGAAGCATCAAAAGGGACTCTCGCAGCCCTAGC
CAACTTTCAATTAGATTTTGCCGAAGTGGTTGGCGGTGGCGAAGCAAGGA
TGAAGGCATACACGAACTTGAGTGGGCACGAATTCGAGCATTTGAATAGA
ATGATTGAGTATCAAGGCAAGGCACTTAAAGAAGTGGAACGCTTATTGTA
TGCGGCCAAAGAGTTTGGAAAAAAAACGATTGTCGAAGAAACCGAGGCCG
AACCAGTGGCAAACCAGGTGAACGGAGACGAAAAAGGAACATCAGaagag
aagataaaggagaaagacactgaaaatgagaaagaaaagggaaaagaaaa
agaaaaagaaatagaaaaagaaGGGGCCGAATAG
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Coding sequence (CDS) from alignment at tig00000005_pilon:162006..163289+

>Ggra2407.t1 ID=Ggra2407.t1|Name=Ggra2407.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1284bp|location=Sequence derived from alignment at tig00000005_pilon:162006..163289+ (Gracilaria gracilis GNS1m male)
ATGGCGCCAAGTTCGAAGCTCCCCGACCTCCACCAGCGCGTATACATCTG
GTTCGATGGGTACGATGAGTACTACCCCGGTCGGGTCGCAAGTCTCACCC
CTCCTTTCGAGTTCAAGGTAATCTTGGAAGACGGTACCGATTGGAACATC
GACTCGAGGAAGCACGTTTACAAGTTCTCCAACGACGACGCTAACGCGCA
ACCCGAGCCTGAAGAAGAACCTGCAAAAGCAGACATACCCCAAATGTCCG
TTAGCAAAAAGAAGGATGACGAATCCGAAAAGCAAGTCTCTGCGGATGAC
CGACCCGAACCAAACGGTGCCCAGACCCGTCGCCGTGCTGGTAGAGCTCT
GAGAAAGAACGCTGCACCAACAAGGATTGTCGAGCCTGATGTTGCATCGC
AAGAAGATCAAGAAGCGGAACCCCGACAAGAAACCGAAAACGATGATTAC
GACCCCAAGGATGATGAGAATGAACCGCAGGAACTACCAAGGCTCAGAAG
ATCGGCAAGGGTTGCAGACGAAGAGCGTGAACGCCGCACCACGAGGAGCA
GAACGAGGACCATCGAAGAACCGGTTGGATTGCCGCCTCGGACACGCAAG
AAGGCATCTGCTAAGAGAACACTCAAGCCAAGCGTTGAAGATGAGAGGGC
TGTGAAGAGACGAAAGCCAGCTGATGAACCAATGGACCAGTTAGATGACG
AACCCATCCGTGATGAAGATGGTGCTGCGGGCTTGTCCACAAAAGCGGTC
ACGGCAATTGCTGTTCAAGCTGCCCTAGAAAGCGCCAAAGCAGTGCTCAA
ACCGCTAAGTGATAAAATGGCTTCAATTGTAAACTCATTCACAGAGATTA
ACACTCTCATGAAGCAAACTACGGAGGCTGCAGCACGAGAAGCTGTCAAA
AAGGCGGTAACAATACCCGAAGCATCAAAAGGGACTCTCGCAGCCCTAGC
CAACTTTCAATTAGATTTTGCCGAAGTGGTTGGCGGTGGCGAAGCAAGGA
TGAAGGCATACACGAACTTGAGTGGGCACGAATTCGAGCATTTGAATAGA
ATGATTGAGTATCAAGGCAAGGCACTTAAAGAAGTGGAACGCTTATTGTA
TGCGGCCAAAGAGTTTGGAAAAAAAACGATTGTCGAAGAAACCGAGGCCG
AACCAGTGGCAAACCAGGTGAACGGAGACGAAAAAGGAACATCAGaagag
aagataaaggagaaagacactgaaaatgagaaagaaaagggaaaagaaaa
agaaaaagaaatagaaaaagaaGGGGCCGAATAG
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