Ggra2398.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra2398.t1
Unique Name	Ggra2398.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	481

Homology

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BLAST of Ggra2398.t1 vs. uniprot
Match: A0A2V3IVS1 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVS1_9FLOR)

HSP 1 Score: 330 bits (846), Expect = 7.380e-105
Identity = 220/477 (46.12%), Postives = 287/477 (60.17%), Query Frame = 0

Query:    2 LHRLPYDVLLRVVHMLCARAPHTDMTAAALALAQASPYLRHVVAHALAHSLTLRFESDASRWACVLRDSLRTLELLTFGSPRHVVAFRHLLRAPRLITVRMPLSPPFLAALHAAPCVQSLFVTSFSTALSALFVSTLASLKRLRALRIDSRTAHLAEMQHAFATSRFGNGHAWQVRLLERVAAAVPRLETLDIFVDDLTAHELVNALRAFPKLCHLVLRTTSSMYMLPVQLVPVLLAMESVALHGFRHVPWLNVSVSRGAGTL----SNRLVAASHLQMCANVQYGALRQLDTVVLRNEPLILPKSLHRLTLVWHDPFVPKMRMHTMPASLCSTICSLPNLNHLVLVHVLISLESLQQLLSSLATQLHTLSVPISMQGCVPSKRLVQLFHLCAQYCTELRELQVSELRCRNFSSCGPAASLSAQPIWPCSGTAERDDVQRLEQALQRLCRRAPYLDERPMRSVIRTMVADQQQLIFC 474
            L  LP DV LR+  ML ARAP TDMT A+LALAQ+SP   H ++ AL HSLTLRFE+DA+ WA +L  +LR+L +LTFGSP +  AFR LL AP L   R+P +   L+ALHAAP ++SLF+TS++   +A  +  L +L  LR+LRIDS    L          R     A    LL R+A  VP+L  LDIFV  + A  L + L  FP L  L LRT    Y L   L PV  A++ + LHGF       +  S  A  L    + +LV  S   M A +Q+  LR LDTVV     L+LP SL  +TL W    VPK  +  +  SL   +  L ++ HL L +VL++ E+L  LLS++  QLH+L+VP+ +Q C P+ RL  +F +CA+YC +LRELQVSE+RC NFSS GPAAS  AQP+   S     + VQRL++AL RLC RAP LDERPM++VI  M +D +Q   C
Sbjct:   11 LDALPEDVQLRIAEMLAARAPCTDMTPASLALAQSSPTQCHTISRALDHSLTLRFETDAAAWAQLLLPTLRSLHILTFGSPLNHAAFRRLLSAPNLQHARIPCARHLLSALHAAPKLRSLFLTSYTPRNNAALLGLLPTLPSLRSLRIDSCALTL------LLPRRRAQPPAADSHLLWRIAQRVPQLVHLDIFVHFIHASRLASTLMNFPCLTSLTLRTNCDAYPLFPDLHPVFEALDELCLHGFYSALIPVIPTSPRARDLCALIATKLVHISECTMVA-MQFPKLRVLDTVVRARHRLVLPASLTDVTLRWEPIPVPKPLVPALSPSLTQRLGELQHVRHLALHNVLVTNENLHSLLSAIGGQLHSLTVPVILQLCAPADRLYDVFEICARYCAQLRELQVSEMRCTNFSSWGPAAS--AQPVHSFSWGLAEESVQRLQRALGRLCTRAPLLDERPMKAVICMMQSDMRQFERC 478

The following BLAST results are available for this feature:

BLAST of Ggra2398.t1 vs. uniprot

BLAST of Ggra2398.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IVS1	7.380e-105	46.12	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 28..423 e-value: 2.9E-7 score: 31.1
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..120
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 142..480
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 121..141
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 126..407

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:131566..133008 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2398.t1	Ggra2398.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000005_pilon 131566..133008 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra2398.t1 ID=Ggra2398.t1|Name=Ggra2398.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=481bp
MLHRLPYDVLLRVVHMLCARAPHTDMTAAALALAQASPYLRHVVAHALAH
SLTLRFESDASRWACVLRDSLRTLELLTFGSPRHVVAFRHLLRAPRLITV
RMPLSPPFLAALHAAPCVQSLFVTSFSTALSALFVSTLASLKRLRALRID
SRTAHLAEMQHAFATSRFGNGHAWQVRLLERVAAAVPRLETLDIFVDDLT
AHELVNALRAFPKLCHLVLRTTSSMYMLPVQLVPVLLAMESVALHGFRHV
PWLNVSVSRGAGTLSNRLVAASHLQMCANVQYGALRQLDTVVLRNEPLIL
PKSLHRLTLVWHDPFVPKMRMHTMPASLCSTICSLPNLNHLVLVHVLISL
ESLQQLLSSLATQLHTLSVPISMQGCVPSKRLVQLFHLCAQYCTELRELQ
VSELRCRNFSSCGPAASLSAQPIWPCSGTAERDDVQRLEQALQRLCRRAP
YLDERPMRSVIRTMVADQQQLIFCHSVYAL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf