Ggra2398.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2398.t1
Unique NameGgra2398.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length481
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:131566..133008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2398Ggra2398Gracilaria gracilis GNS1m malegenetig00000005_pilon 131566..133008 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2398.t1.stop1Ggra2398.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 131566..131568 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2398.t1.CDS1Ggra2398.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 131566..133008 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2398.t1.exon1Ggra2398.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 131566..133008 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2398.t1.start1Ggra2398.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 133006..133008 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2398.t1Ggra2398.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 131566..133008 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2398.t1 ID=Ggra2398.t1|Name=Ggra2398.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=481bp
MLHRLPYDVLLRVVHMLCARAPHTDMTAAALALAQASPYLRHVVAHALAH
SLTLRFESDASRWACVLRDSLRTLELLTFGSPRHVVAFRHLLRAPRLITV
RMPLSPPFLAALHAAPCVQSLFVTSFSTALSALFVSTLASLKRLRALRID
SRTAHLAEMQHAFATSRFGNGHAWQVRLLERVAAAVPRLETLDIFVDDLT
AHELVNALRAFPKLCHLVLRTTSSMYMLPVQLVPVLLAMESVALHGFRHV
PWLNVSVSRGAGTLSNRLVAASHLQMCANVQYGALRQLDTVVLRNEPLIL
PKSLHRLTLVWHDPFVPKMRMHTMPASLCSTICSLPNLNHLVLVHVLISL
ESLQQLLSSLATQLHTLSVPISMQGCVPSKRLVQLFHLCAQYCTELRELQ
VSELRCRNFSSCGPAASLSAQPIWPCSGTAERDDVQRLEQALQRLCRRAP
YLDERPMRSVIRTMVADQQQLIFCHSVYAL*
back to top

spliced messenger RNA

>Ggra2398.t1 ID=Ggra2398.t1|Name=Ggra2398.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1443bp|location=Sequence derived from alignment at tig00000005_pilon:131566..133008- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCACCGCCTCCCGTACGACGTGCTGCTGCGCGTCGTGCACATGCT
TTGCGCGCGCGCGCCGCACACGGACATGACGGCCGCCGCGCTGGCGCTGG
CGCAGGCGTCGCCCTATCTGCGCCACGTCGTGGCGCATGCGCTGGCGCAC
TCGCTCACGCTGCGCTTCGAGAGCGATGCGTCGCGTTGGGCGTGCGTGCT
ACGCGACTCGCTGCGCACGCTCGAGTTGCTCACCTTCGGATCTCCGCGTC
ATGTGGTCGCCTTCCGCCACTTGCTGCGTGCGCCGCGCTTGATCACCGTG
CGTATGCCGCTTTCGCCGCCGTTTTTGGCCGCGCTGCACGCGGCGCCGTG
CGTGCAATCGCTGTTTGTCACGTCGTTTTCCACCGCGCTCAGCGCGCTGT
TTGTGAGCACGCTCGCTTCTTTGAAGCGCTTGCGCGCGCTGAGGATTGAT
TCGCGCACGGCGCATTTGGCGGAGATGCAGCATGCGTTCGCGACCAGTCG
CTTTGGCAATGGCCATGCGTGGCAGGTGCGCTTGCTTGAGCGCGTTGCCG
CAGCAGTGCCTCGCTTGGAGACGTTGGATATTTTTGTGGACGATTTGACC
GCTCACGAATTGGTCAACGCGCTCAGAGCCTTTCCGAAGCTCTGCCATTT
GGTGCTGCGCACCACTTCATCCATGTACATGCTGCCGGTGCAGTTGGTGC
CCGTTCTGTTGGCTATGGAAAGCGTTGCTTTGCATGGCTTTCGCCATGTG
CCTTGGCTCAATGTTTCGGTCAGTCGTGGTGCTGGTACGCTTTCGAATCG
CCTGGTTGCTGCCTCTCATTTGCAAATGTGTGCCAATGTTCAGTATGGTG
CGTTGCGACAGCTTGACACCGTTGTGCTACGAAATGAGCCGTTGATTCTA
CCCAAATCTCTTCATCGCCTCACATTGGTATGGCATGATCCATTCGTGCC
CAAAATGAGGATGCATACAATGCCCGCTTCGCTCTGTTCAACCATCTGTT
CTCTGCCGAATCTCAACCATCTAGTTCTGGTGCACGTTCTCATCAGCTTG
GAGAGTCTACAACAGCTTTTAAGCTCGCTGGCAACGCAGCTACACACATT
GAGCGTTCCCATCTCAATGCAGGGCTGTGTGCCGTCCAAAAGACTTGTAC
AATTGTTCCACCTCTGCGCGCAGTACTGCACCGAGCTTAGAGAATTGCAG
GTGAGTGAGTTGCGATGCAGGAACTTTTCCAGCTGCGGTCCGGCCGCTTC
GTTATCTGCGCAGCCCATTTGGCCGTGCAGCGGCACGGCTGAGCGAGACG
ACGTACAGCGCTTGGAGCAGGCGTTGCAACGGTTGTGTCGACGCGCGCCG
TACCTAGATGAACGTCCGATGCGCAGCGTGATCCGCACTATGGTTGCGGA
TCAACAGCAACTCATTTTCTGTCATTCTGTATACGCGTTGTAA
back to top

protein sequence of Ggra2398.t1

>Ggra2398.t1 ID=Ggra2398.t1|Name=Ggra2398.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=481bp
MLHRLPYDVLLRVVHMLCARAPHTDMTAAALALAQASPYLRHVVAHALAH
SLTLRFESDASRWACVLRDSLRTLELLTFGSPRHVVAFRHLLRAPRLITV
RMPLSPPFLAALHAAPCVQSLFVTSFSTALSALFVSTLASLKRLRALRID
SRTAHLAEMQHAFATSRFGNGHAWQVRLLERVAAAVPRLETLDIFVDDLT
AHELVNALRAFPKLCHLVLRTTSSMYMLPVQLVPVLLAMESVALHGFRHV
PWLNVSVSRGAGTLSNRLVAASHLQMCANVQYGALRQLDTVVLRNEPLIL
PKSLHRLTLVWHDPFVPKMRMHTMPASLCSTICSLPNLNHLVLVHVLISL
ESLQQLLSSLATQLHTLSVPISMQGCVPSKRLVQLFHLCAQYCTELRELQ
VSELRCRNFSSCGPAASLSAQPIWPCSGTAERDDVQRLEQALQRLCRRAP
YLDERPMRSVIRTMVADQQQLIFCHSVYAL*
back to top

mRNA from alignment at tig00000005_pilon:131566..133008-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2398.t1 ID=Ggra2398.t1|Name=Ggra2398.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1443bp|location=Sequence derived from alignment at tig00000005_pilon:131566..133008- (Gracilaria gracilis GNS1m male)
ATGCTTCACCGCCTCCCGTACGACGTGCTGCTGCGCGTCGTGCACATGCT
TTGCGCGCGCGCGCCGCACACGGACATGACGGCCGCCGCGCTGGCGCTGG
CGCAGGCGTCGCCCTATCTGCGCCACGTCGTGGCGCATGCGCTGGCGCAC
TCGCTCACGCTGCGCTTCGAGAGCGATGCGTCGCGTTGGGCGTGCGTGCT
ACGCGACTCGCTGCGCACGCTCGAGTTGCTCACCTTCGGATCTCCGCGTC
ATGTGGTCGCCTTCCGCCACTTGCTGCGTGCGCCGCGCTTGATCACCGTG
CGTATGCCGCTTTCGCCGCCGTTTTTGGCCGCGCTGCACGCGGCGCCGTG
CGTGCAATCGCTGTTTGTCACGTCGTTTTCCACCGCGCTCAGCGCGCTGT
TTGTGAGCACGCTCGCTTCTTTGAAGCGCTTGCGCGCGCTGAGGATTGAT
TCGCGCACGGCGCATTTGGCGGAGATGCAGCATGCGTTCGCGACCAGTCG
CTTTGGCAATGGCCATGCGTGGCAGGTGCGCTTGCTTGAGCGCGTTGCCG
CAGCAGTGCCTCGCTTGGAGACGTTGGATATTTTTGTGGACGATTTGACC
GCTCACGAATTGGTCAACGCGCTCAGAGCCTTTCCGAAGCTCTGCCATTT
GGTGCTGCGCACCACTTCATCCATGTACATGCTGCCGGTGCAGTTGGTGC
CCGTTCTGTTGGCTATGGAAAGCGTTGCTTTGCATGGCTTTCGCCATGTG
CCTTGGCTCAATGTTTCGGTCAGTCGTGGTGCTGGTACGCTTTCGAATCG
CCTGGTTGCTGCCTCTCATTTGCAAATGTGTGCCAATGTTCAGTATGGTG
CGTTGCGACAGCTTGACACCGTTGTGCTACGAAATGAGCCGTTGATTCTA
CCCAAATCTCTTCATCGCCTCACATTGGTATGGCATGATCCATTCGTGCC
CAAAATGAGGATGCATACAATGCCCGCTTCGCTCTGTTCAACCATCTGTT
CTCTGCCGAATCTCAACCATCTAGTTCTGGTGCACGTTCTCATCAGCTTG
GAGAGTCTACAACAGCTTTTAAGCTCGCTGGCAACGCAGCTACACACATT
GAGCGTTCCCATCTCAATGCAGGGCTGTGTGCCGTCCAAAAGACTTGTAC
AATTGTTCCACCTCTGCGCGCAGTACTGCACCGAGCTTAGAGAATTGCAG
GTGAGTGAGTTGCGATGCAGGAACTTTTCCAGCTGCGGTCCGGCCGCTTC
GTTATCTGCGCAGCCCATTTGGCCGTGCAGCGGCACGGCTGAGCGAGACG
ACGTACAGCGCTTGGAGCAGGCGTTGCAACGGTTGTGTCGACGCGCGCCG
TACCTAGATGAACGTCCGATGCGCAGCGTGATCCGCACTATGGTTGCGGA
TCAACAGCAACTCATTTTCTGTCATTCTGTATACGCGTTGTAA
back to top

Coding sequence (CDS) from alignment at tig00000005_pilon:131566..133008-

>Ggra2398.t1 ID=Ggra2398.t1|Name=Ggra2398.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1443bp|location=Sequence derived from alignment at tig00000005_pilon:131566..133008- (Gracilaria gracilis GNS1m male)
ATGCTTCACCGCCTCCCGTACGACGTGCTGCTGCGCGTCGTGCACATGCT
TTGCGCGCGCGCGCCGCACACGGACATGACGGCCGCCGCGCTGGCGCTGG
CGCAGGCGTCGCCCTATCTGCGCCACGTCGTGGCGCATGCGCTGGCGCAC
TCGCTCACGCTGCGCTTCGAGAGCGATGCGTCGCGTTGGGCGTGCGTGCT
ACGCGACTCGCTGCGCACGCTCGAGTTGCTCACCTTCGGATCTCCGCGTC
ATGTGGTCGCCTTCCGCCACTTGCTGCGTGCGCCGCGCTTGATCACCGTG
CGTATGCCGCTTTCGCCGCCGTTTTTGGCCGCGCTGCACGCGGCGCCGTG
CGTGCAATCGCTGTTTGTCACGTCGTTTTCCACCGCGCTCAGCGCGCTGT
TTGTGAGCACGCTCGCTTCTTTGAAGCGCTTGCGCGCGCTGAGGATTGAT
TCGCGCACGGCGCATTTGGCGGAGATGCAGCATGCGTTCGCGACCAGTCG
CTTTGGCAATGGCCATGCGTGGCAGGTGCGCTTGCTTGAGCGCGTTGCCG
CAGCAGTGCCTCGCTTGGAGACGTTGGATATTTTTGTGGACGATTTGACC
GCTCACGAATTGGTCAACGCGCTCAGAGCCTTTCCGAAGCTCTGCCATTT
GGTGCTGCGCACCACTTCATCCATGTACATGCTGCCGGTGCAGTTGGTGC
CCGTTCTGTTGGCTATGGAAAGCGTTGCTTTGCATGGCTTTCGCCATGTG
CCTTGGCTCAATGTTTCGGTCAGTCGTGGTGCTGGTACGCTTTCGAATCG
CCTGGTTGCTGCCTCTCATTTGCAAATGTGTGCCAATGTTCAGTATGGTG
CGTTGCGACAGCTTGACACCGTTGTGCTACGAAATGAGCCGTTGATTCTA
CCCAAATCTCTTCATCGCCTCACATTGGTATGGCATGATCCATTCGTGCC
CAAAATGAGGATGCATACAATGCCCGCTTCGCTCTGTTCAACCATCTGTT
CTCTGCCGAATCTCAACCATCTAGTTCTGGTGCACGTTCTCATCAGCTTG
GAGAGTCTACAACAGCTTTTAAGCTCGCTGGCAACGCAGCTACACACATT
GAGCGTTCCCATCTCAATGCAGGGCTGTGTGCCGTCCAAAAGACTTGTAC
AATTGTTCCACCTCTGCGCGCAGTACTGCACCGAGCTTAGAGAATTGCAG
GTGAGTGAGTTGCGATGCAGGAACTTTTCCAGCTGCGGTCCGGCCGCTTC
GTTATCTGCGCAGCCCATTTGGCCGTGCAGCGGCACGGCTGAGCGAGACG
ACGTACAGCGCTTGGAGCAGGCGTTGCAACGGTTGTGTCGACGCGCGCCG
TACCTAGATGAACGTCCGATGCGCAGCGTGATCCGCACTATGGTTGCGGA
TCAACAGCAACTCATTTTCTGTCATTCTGTATACGCGTTGTAA
back to top