Ggra2390.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2390.t1
Unique NameGgra2390.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length221
Homology
BLAST of Ggra2390.t1 vs. uniprot
Match: A0A2V3ISP7 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISP7_9FLOR)

HSP 1 Score: 293 bits (750), Expect = 3.200e-98
Identity = 143/211 (67.77%), Postives = 173/211 (81.99%), Query Frame = 0
Query:    4 NVGRISLITGGCLLTGLLGNRLLLTPLDGLTATQSRADLLGVATSAMLILYGLARTEISEKRARVEMGGVDVSTGFDGLRGVSVERGSRALLDGVQGVRSVAVVVGGEGRYFMGKFRDEKPVLAVKKEGVISKALNSGNRAYLADMKVVPVRETEFGFLPKECQSVLVQPVNEDVCVIVAADRPRPFTGQDFGWTQAICDRIGASLMGHSK 214
            N GR+SLITGGCLLTGLLGNRLLLTPLDGLTATQSRAD+LGV   A L+LYGLAR E+SE+RA VEMGG+ V +GF+G      ER ++A++DG++G +SVAV+V GEGR+F+G+F  E P   + +EG+++KA+ SG RAYLADMKVVPVRETEFGFLP++CQ VLVQP +EDVCVIV ADRPR  TGQDFGW QAICDR+G  L   +K
Sbjct:    2 NFGRVSLITGGCLLTGLLGNRLLLTPLDGLTATQSRADILGVIAGATLVLYGLARAEVSERRASVEMGGIQVKSGFEGSNAEVAERCAQAVIDGIEGAKSVAVMVRGEGRFFLGQFSTEAPATHMVEEGIVAKAMGSGKRAYLADMKVVPVRETEFGFLPQKCQCVLVQPASEDVCVIVGADRPRALTGQDFGWVQAICDRMGGYLSKEAK 212          
BLAST of Ggra2390.t1 vs. uniprot
Match: A0A7S2ZMS3 (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZMS3_9RHOD)

HSP 1 Score: 102 bits (255), Expect = 3.000e-23
Identity = 75/207 (36.23%), Postives = 113/207 (54.59%), Query Frame = 0
Query:    4 NVGRISLITGGCLLTGLLGNRLLLTPLDGLTATQSRADLLGVATSAMLILYGLARTEISEKRAR-VEMGGVDVS----TGFDGLRGVSVERGSRALLDGVQGVRSVAVVVGGEGRYFMGKFRDEKPVLAVKKEGVISKALNSGNRAYLADMKVVPVRETEFGFLPKECQSVLVQPVNEDVCVIVAADRPRPFTGQDFGWTQAICDRI 205
            N GR+++          L NRL  +    +    SRADL+ VA+ AML+LYG+A  +I  +    V++ G +VS    +  DGL G +    SR+++  +  VRSV +  GG+     G    E PV  V    ++ KAL S  + Y A ++++P R  EF +LPKE Q+VL+QP++    +I+ AD+ RP    DFGW QAI  R+
Sbjct:   35 NAGRLAIGASVVSFASTLTNRLFAS--GEVVDAHSRADLMCVASGAMLLLYGIANVQIDPREEETVDLKGEEVSEIQKSDPDGLLGWA----SRSIIASIPNVRSVLIYEGGKTVLREG-IMGESPV--VVPGPILEKALTSEEKTYFARLEILPGR-FEFTYLPKETQAVLIQPLSPTSALILGADKVRPIASVDFGWIQAITQRV 231          
BLAST of Ggra2390.t1 vs. uniprot
Match: A0A7S0G2H2 (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G2H2_9RHOD)

HSP 1 Score: 102 bits (253), Expect = 6.150e-23
Identity = 69/174 (39.66%), Postives = 102/174 (58.62%), Query Frame = 0
Query:   37 QSRADLLGVATSAMLILYGLARTEISEKRAR-VEMGGVDVS----TGFDGLRGVSVERGSRALLDGVQGVRSVAVVVGGEGRYFMGKFRDEKPVLAVKKEGVISKALNSGNRAYLADMKVVPVRETEFGFLPKECQSVLVQPVNEDVCVIVAADRPRPFTGQDFGWTQAICDRI 205
             SRADL+ VA+ AML+LYG+A  +I  +  + V++ G +VS    +  DGL G +    SR+++D +  VRSV +  GG+     G    E P  AV    ++ KAL S  + Y A ++++P R  EF +LPK  Q+VL+QP++    +I+ AD+ RP    DFGW QAI  RI
Sbjct:   68 HSRADLVCVASGAMLLLYGIANVQIDPREEQTVDLEGEEVSEIQKSDPDGLLGWA----SRSIIDSIPNVRSVLIYEGGKTVLREGVM-GESP--AVVPGPILEKALTSEEKTYFARLEILPGR-FEFTYLPKGTQAVLIQPLSPTSALILGADKVRPIASVDFGWIQAISQRI 233          
BLAST of Ggra2390.t1 vs. uniprot
Match: A0A1Z4RAJ3 (Uncharacterized protein n=1 Tax=Calothrix sp. NIES-4101 TaxID=2005461 RepID=A0A1Z4RAJ3_9CYAN)

HSP 1 Score: 85.1 bits (209), Expect = 1.090e-16
Identity = 67/211 (31.75%), Postives = 107/211 (50.71%), Query Frame = 0
Query:    7 RISLITGGCLLTGLLGNRLLLTPLDGLTATQSRADLLGVATSAMLILYGL----ARTEISEKRARVEMGGVDVSTGFDGLRGVSVERGSRALLDGVQGVRSVAVVVGGEGRYFMGKFRDEKPVLAVKKE----GVISKALNSGNRAYLADMKVVPVRETEFGFLPKECQSVLVQPVNEDVCVIVAADRPRPFTGQDFGWTQAICDRIGASL 209
            R+ L+TGG     L  NR+L TP   LT +QSRAD+LGV  SA+LIL GL     R++I +    +   G ++++         +   SR LL  +  V    V+V      + GK    + +LA K +     ++++ +      YL D+K  P +  EF +LP+  Q ++ QP+  +  +I+ A+ PR +T QD  W   I D++  SL
Sbjct:   12 RLPLVTGGLGAVLLFINRIL-TP--ELTNSQSRADVLGVILSALLILTGLLWQQVRSQIPDAVQLIGEEGFELTSDLPDAVKTELAWASRLLL--LNTVTKAIVIV------YQGKVILRRGILAKKSQVTPGAILNRVIEKQKPVYLVDVKAYPGK-IEFDYLPENTQGIICQPLGAEGAMILGANAPRSYTKQDENWIAGIADKLTVSL 210          
BLAST of Ggra2390.t1 vs. uniprot
Match: A0A8J7AU06 (Cofactor assembly of complex C subunit B n=2 Tax=Romeria TaxID=945765 RepID=A0A8J7AU06_9CYAN)

HSP 1 Score: 79.3 bits (194), Expect = 1.770e-14
Identity = 67/207 (32.37%), Postives = 99/207 (47.83%), Query Frame = 0
Query:   16 LLTGLLGNRLLL-----TPLDGLTATQSRADLLGVATSAMLILYGLARTEISEKRAR-VEMGG---VDVSTGFDGLRGVSVERGSRALLDGVQGVRSVAVVVGGEGRYFMGKFRDEKPVLA----VKKEGVISKALNSGNRAYLADMKVVPVRETEFGFLPKECQSVLVQPVNEDVCVIVAADRPRPFTGQDFGWTQAICDRIGASL 209
            L  G LG  LLL     TP   LTA+Q+RAD LGV  SA+LIL GL   ++  +    V++ G    D++          +   S  LL      RS+ V       Y+ G+    + VL     VK   ++ + L      YL ++ + P R  EF +LP+  Q V+ QP+ +   +I+ A+ PR +T QD  W   I ++IG SL
Sbjct:   15 LFVGALGGVLLLVNRLATP--ALTASQARADALGVILSALLILIGLLWQQVQPRSPETVQLAGQEGFDLNPDLPAALKTELAWASSLLLTNTV-TRSIVV-------YYRGQVLLRRGVLGSNSQVKPGPILQRVLEKKRPVYLVNLSIYPGR-VEFDYLPENTQGVICQPLGQQGALILGANAPRSYTQQDEAWIAGISEKIGDSL 210          
BLAST of Ggra2390.t1 vs. uniprot
Match: A0A1Q4S0Z5 (Uncharacterized protein n=8 Tax=Cyanobacteria TaxID=1117 RepID=A0A1Q4S0Z5_9CYAN)

HSP 1 Score: 78.2 bits (191), Expect = 3.710e-14
Identity = 66/209 (31.58%), Postives = 101/209 (48.33%), Query Frame = 0
Query:   16 LLTGLLGNRLLL-----TPLDGLTATQSRADLLGVATSAMLILYGLARTEISEKRA-RVEM---GGVDVSTGFDGLRGVSVERGSRALLDGVQGVRSVAVVVGGEGRYFMGKFRDEKPVLAVKKE----GVISKALNSGNRAYLADMKVVPVRETEFGFLPKECQSVLVQPVNEDVCVIVAADRPRPFTGQDFGWTQAICDRIGASLMG 211
            L+ G+LG  LL      TP   LT +QSRAD+LGV  SA+L+L G+   ++  +    VE+    G ++ T         +   SR LL      RS+ VV       + GK    + +L  K E     ++++ L      YL D+K  P +  EF +LP+  Q ++ QP+     +I+ A+ PR +T QD  W   I D++  SL G
Sbjct:   14 LVVGMLGAVLLFINRIFTP--ELTNSQSRADVLGVILSALLVLTGMLWQQVQARTPDAVELIGEEGFEIVTDLPDTVKNELAWASRLLLLNTV-TRSIVVV-------YKGKVLLRRGILGQKSEVKPGAILNRVLEKQKPIYLVDVKAYPGK-IEFDYLPENTQGIICQPIGSQGAMILGANAPRSYTQQDENWIAGIADKLAVSLEG 211          
BLAST of Ggra2390.t1 vs. uniprot
Match: A0A2A2TA54 (Uncharacterized protein n=1 Tax=Calothrix elsteri CCALA 953 TaxID=987040 RepID=A0A2A2TA54_9CYAN)

HSP 1 Score: 77.8 bits (190), Expect = 6.080e-14
Identity = 61/187 (32.62%), Postives = 93/187 (49.73%), Query Frame = 0
Query:   33 LTATQSRADLLGVATSAMLILYGL------ARTEISEKRARVEMGGVDVSTGFDGLRGVSVERGSRALLDGVQGVRSVAVVVGGEGRYFMGKFRDEKPVLAVKKE----GVISKALNSGNRAYLADMKVVPVRETEFGFLPKECQSVLVQPVNEDVCVIVAADRPRPFTGQDFGWTQAICDRIGASL 209
            LT +QSRAD+LGV  SA+LIL G+      +RT  S K    E  G +++     +    +   SR LL      RS+ VV       + GK    + +LA K E     ++++ L      YL D+K  P +  EF +LP+  Q ++ QP+  +  +I+ A+ PR +T QD  W   I D++  SL
Sbjct:   35 LTNSQSRADVLGVILSALLILTGMLWQQVQSRTPDSVKLVGEE--GFEIAPELPEVVKTELAWASRLLLLNTA-TRSLVVV-------YQGKVILRRGILAQKSEVTPGAILNRVLEKQKPVYLVDVKAYPGK-IEFDYLPENTQGIICQPLATEGAMILGANAPRSYTKQDENWIAGIADKLTVSL 210          
BLAST of Ggra2390.t1 vs. uniprot
Match: A0A8J4B1W8 (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4B1W8_9CHLO)

HSP 1 Score: 77.0 bits (188), Expect = 3.630e-13
Identity = 62/211 (29.38%), Postives = 106/211 (50.24%), Query Frame = 0
Query:    8 ISLITGGCLLTGLLGNRLL--LTPLDGLTATQSRADLLGVATSAMLILYGLARTEISEKR-ARVEMGGVDVSTGFDGLRGVSV-----ERGSRALLDGVQGVRSVAVVVGGEGRYFMGKF-RDEKPVLAVKKEGVISKALNSGNRAYLADMKVVPVRETEFGFLPKECQSVLVQPVNEDVCVIVAADRPRPFTGQDFGWTQAICDRIGASL 209
            + L TGG  +  LL NR L  + P+   +++QSRAD+LG+  SA+L+L GL    +  +  A V++ G  V+    GL+  +      E    ++    +  +S+ ++  G   +  G   R +KP  A+  + + S+A+  G   YLA++ + P R     FLP+  Q V+VQPV +   ++   D  R F+  D  W   + D++  SL
Sbjct:   63 LPLYTGGMGVVSLLLNRTLSGIAPVVDASSSQSRADVLGIVLSAVLLLTGLQWLSLKPREVAAVDLDGPTVNYVDPGLKPHATLLREFEWARNSMFKATR-CKSLVLIYKGRTLFHYGYILRGQKPGEALPGD-ICSQAMKDGRGNYLANLVLYPGRPEFTSFLPENTQGVVVQPVGDQGVLVAGTDTVRGFSRLDQAWLATLADKLEVSL 271          
BLAST of Ggra2390.t1 vs. uniprot
Match: A0A2J7ZTZ1 (Uncharacterized protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZTZ1_9CHLO)

HSP 1 Score: 74.7 bits (182), Expect = 2.350e-12
Identity = 65/210 (30.95%), Postives = 103/210 (49.05%), Query Frame = 0
Query:    8 ISLITGGCLLTGLLGNRLL--LTPLDGLTATQSRADLLGVATSAMLILYGLARTEISEKR-ARVEMGG--VD-VSTGFDGLRGVSVERG-SRALLDGVQGVRSVAVVVGGEGRYFMGKF-RDEKPVLAVKKEGVISKALNSGNRAYLADMKVVPVRETEFGFLPKECQSVLVQPVNEDVCVIVAADRPRPFTGQDFGWTQAICDRIGASL 209
            + L  GG  +  LL NR    + P+   +++QSRAD+LG+  SA+L+L GL    + ++  A VE  G  VD V +G      +  E G +R  +      RS+ ++  G   +  G   R   P  A   + + ++A+  G   YLA++ + P R     FLP+  Q V+VQPV  D  ++   D  R F+  D  W  +I D++  SL
Sbjct:   64 LPLYAGGLGVVSLLLNRTFSGIAPVVDASSSQSRADVLGIVLSAVLLLTGLQWLALKQREVAAVEPDGPVVDYVDSGLKPQAALCREFGWARDSMFRTTRCRSLLLIYKGRNLFHFGHILRGLSPGSAAPGD-ICAQAMRDGRGNYLANLLLYPGRPEFTAFLPENTQGVMVQPVGSDGVLVAGTDMVRGFSRLDQAWLASIADKLEVSL 272          
BLAST of Ggra2390.t1 vs. uniprot
Match: A0A7J7Q389 (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q389_9CHLO)

HSP 1 Score: 74.7 bits (182), Expect = 3.360e-12
Identity = 63/216 (29.17%), Postives = 99/216 (45.83%), Query Frame = 0
Query:    5 VGRISLITGGCLLTGLLGNRLL--LTPLDGLTATQSRADLLGVATSAMLILYGLARTEISEKRA-RVEMGGVDVSTGFDGLR---GVSVE-RGSRALLDGVQGVRSVAVVVGGEGRYFMGKFRDEKPVLAVKKEGVISKALNSGNRAYLADMKVVPVRETEFGFLPKECQSVLVQPVNEDVCVIVAADRPRPFTGQDFGWTQAICDRIGASLMGHS 213
            V  + L  GG    GLL NR L  + P+    ++QSRAD+LG+  SA+L+L GL    +  K    V + GV V      ++      +E R +   L       S+ V+  G   +  G  R    +       V  KA++S    YLA++ + P RE    +LP+  Q V+VQP+  D  +++  D  R  +  D  W   I D++  S  G++
Sbjct:   49 VRSLPLWAGGVGFGGLLANRALSGIAPIVDAGSSQSRADVLGILLSAVLLLTGLQWLALKPKPIDAVALDGVSVDYLNPDIKLPKAAELELRWAWQALQATSRATSLVVIYQGRNLFHAGMARGGHQLGTAAAGEVARKAMDSSKGNYLANLVLYPGREEFVRYLPENTQGVVVQPLGGDGVLVIGTDTLRGLSRLDQAWIAIIADKLEVSFEGYT 264          
The following BLAST results are available for this feature:
BLAST of Ggra2390.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A2V3ISP73.200e-9867.77Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B C... [more]
A0A7S2ZMS33.000e-2336.23Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S0G2H26.150e-2339.66Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A1Z4RAJ31.090e-1631.75Uncharacterized protein n=1 Tax=Calothrix sp. NIES... [more]
A0A8J7AU061.770e-1432.37Cofactor assembly of complex C subunit B n=2 Tax=R... [more]
A0A1Q4S0Z53.710e-1431.58Uncharacterized protein n=8 Tax=Cyanobacteria TaxI... [more]
A0A2A2TA546.080e-1432.62Uncharacterized protein n=1 Tax=Calothrix elsteri ... [more]
A0A8J4B1W83.630e-1329.38Uncharacterized protein n=1 Tax=Volvox africanus T... [more]
A0A2J7ZTZ12.350e-1230.95Uncharacterized protein n=1 Tax=Tetrabaena sociali... [more]
A0A7J7Q3893.360e-1229.17Uncharacterized protein n=1 Tax=Scenedesmus sp. NR... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021325Cofactor assembly of complex C subunit B, CCB2/CCB4PFAMPF11152CCB2_CCB4coord: 9..205
e-value: 7.6E-27
score: 93.9
IPR044705COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4PANTHERPTHR34943FAMILY NOT NAMEDcoord: 10..212
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 7..27
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 58..220
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..6
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 39..57
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..38

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:111291..112044 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2390.t1Ggra2390.t1Gracilaria gracilis GNS1m malemRNAtig00000005_pilon 111291..112044 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2390.t1 ID=Ggra2390.t1|Name=Ggra2390.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=221bp
MGANVGRISLITGGCLLTGLLGNRLLLTPLDGLTATQSRADLLGVATSAM
LILYGLARTEISEKRARVEMGGVDVSTGFDGLRGVSVERGSRALLDGVQG
VRSVAVVVGGEGRYFMGKFRDEKPVLAVKKEGVISKALNSGNRAYLADMK
VVPVRETEFGFLPKECQSVLVQPVNEDVCVIVAADRPRPFTGQDFGWTQA
ICDRIGASLMGHSKETIKGV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021325CCB2/CCB4
IPR044705CCB4