Ggra2390.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2390.t1
Unique NameGgra2390.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length221
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:111291..112044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog321332.CYB_0108
PFAMsCCB2_CCB4
Max annot lvl1117|Cyanobacteria
Evalue1.15e-19
EggNOG OGsCOG2203@1|root,COG2203@2|Bacteria,1G2RW@1117|Cyanobacteria,1GYY8@1129|Synechococcus
DescriptionCofactor assembly of complex C subunit B, CCB2/CCB4
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2390Ggra2390Gracilaria gracilis GNS1m malegenetig00000005_pilon 111291..112044 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2390.t1Ggra2390.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 111291..112044 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2390.t1.start1Ggra2390.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 111291..111293 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2390.t1.CDS1Ggra2390.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 111291..111791 +
Ggra2390.t1.CDS2Ggra2390.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000005_pilon 111883..112044 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2390.t1.exon1Ggra2390.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 111291..111791 +
Ggra2390.t1.exon2Ggra2390.t1.exon2Gracilaria gracilis GNS1m maleexontig00000005_pilon 111883..112044 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2390.t1.intron1Ggra2390.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000005_pilon 111792..111882 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2390.t1.stop1Ggra2390.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 112042..112044 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2390.t1 ID=Ggra2390.t1|Name=Ggra2390.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=221bp
MGANVGRISLITGGCLLTGLLGNRLLLTPLDGLTATQSRADLLGVATSAM
LILYGLARTEISEKRARVEMGGVDVSTGFDGLRGVSVERGSRALLDGVQG
VRSVAVVVGGEGRYFMGKFRDEKPVLAVKKEGVISKALNSGNRAYLADMK
VVPVRETEFGFLPKECQSVLVQPVNEDVCVIVAADRPRPFTGQDFGWTQA
ICDRIGASLMGHSKETIKGV*
back to top

spliced messenger RNA

>Ggra2390.t1 ID=Ggra2390.t1|Name=Ggra2390.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=663bp|location=Sequence derived from alignment at tig00000005_pilon:111291..112044+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGCCAACGTCGGCCGCATTTCCTTAATAACAGGTGGTTGCCTTTT
GACAGGATTGCTCGGCAATCGGTTACTCTTGACGCCATTAGATGGACTCA
CAGCCACGCAATCGCGAGCTGATCTTCTCGGGGTAGCAACGAGTGCTATG
CTGATTCTGTACGGACTAGCAAGAACAGAGATTTCTGAAAAACGAGCGCG
AGTGGAGATGGGTGGGGTGGACGTTTCAACAGGCTTTGATGGGTTGCGGG
GAGTGAGTGTGGAGCGCGGATCTCGAGCTCTTCTTGACGGTGTTCAGGGC
GTCAGAAGTGTAGCTGTTGTGGTTGGCGGTGAGGGGAGATACTTTATGGG
CAAGTTCAGAGATGAAAAGCCGGTTCTTGCCGTCAAGAAGGAGGGGGTCA
TTTCGAAGGCATTAAACTCCGGAAATCGTGCATACTTGGCTGATATGAAG
GTCGTTCCCGTACGAGAGACTGAATTTGGATTCCTTCCAAAAGAGTGTCA
GTCTGTGCTTGTGCAGCCTGTAAACGAAGATGTCTGTGTCATTGTCGCAG
CAGATCGTCCTAGGCCATTTACAGGACAAGACTTTGGGTGGACTCAGGCC
ATATGCGATCGAATTGGAGCTTCATTGATGGGTCATAGCAAAGAAACCAT
AAAGGGTGTTTAG
back to top

protein sequence of Ggra2390.t1

>Ggra2390.t1 ID=Ggra2390.t1|Name=Ggra2390.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=221bp
MGANVGRISLITGGCLLTGLLGNRLLLTPLDGLTATQSRADLLGVATSAM
LILYGLARTEISEKRARVEMGGVDVSTGFDGLRGVSVERGSRALLDGVQG
VRSVAVVVGGEGRYFMGKFRDEKPVLAVKKEGVISKALNSGNRAYLADMK
VVPVRETEFGFLPKECQSVLVQPVNEDVCVIVAADRPRPFTGQDFGWTQA
ICDRIGASLMGHSKETIKGV*
back to top

mRNA from alignment at tig00000005_pilon:111291..112044+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2390.t1 ID=Ggra2390.t1|Name=Ggra2390.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=754bp|location=Sequence derived from alignment at tig00000005_pilon:111291..112044+ (Gracilaria gracilis GNS1m male)
ATGGGAGCCAACGTCGGCCGCATTTCCTTAATAACAGGTGGTTGCCTTTT
GACAGGATTGCTCGGCAATCGGTTACTCTTGACGCCATTAGATGGACTCA
CAGCCACGCAATCGCGAGCTGATCTTCTCGGGGTAGCAACGAGTGCTATG
CTGATTCTGTACGGACTAGCAAGAACAGAGATTTCTGAAAAACGAGCGCG
AGTGGAGATGGGTGGGGTGGACGTTTCAACAGGCTTTGATGGGTTGCGGG
GAGTGAGTGTGGAGCGCGGATCTCGAGCTCTTCTTGACGGTGTTCAGGGC
GTCAGAAGTGTAGCTGTTGTGGTTGGCGGTGAGGGGAGATACTTTATGGG
CAAGTTCAGAGATGAAAAGCCGGTTCTTGCCGTCAAGAAGGAGGGGGTCA
TTTCGAAGGCATTAAACTCCGGAAATCGTGCATACTTGGCTGATATGAAG
GTCGTTCCCGTACGAGAGACTGAATTTGGATTCCTTCCAAAAGAGTGTCA
GGTACGTGAGGAAGCCTAGTTTTAATTGCATGTATTGCGATCTGATGATG
CTTAACAGCTGGTGAGATTTACTAACCTTACTATTGCAATAGTCTGTGCT
TGTGCAGCCTGTAAACGAAGATGTCTGTGTCATTGTCGCAGCAGATCGTC
CTAGGCCATTTACAGGACAAGACTTTGGGTGGACTCAGGCCATATGCGAT
CGAATTGGAGCTTCATTGATGGGTCATAGCAAAGAAACCATAAAGGGTGT
TTAG
back to top

Coding sequence (CDS) from alignment at tig00000005_pilon:111291..112044+

>Ggra2390.t1 ID=Ggra2390.t1|Name=Ggra2390.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=663bp|location=Sequence derived from alignment at tig00000005_pilon:111291..112044+ (Gracilaria gracilis GNS1m male)
ATGGGAGCCAACGTCGGCCGCATTTCCTTAATAACAGGTGGTTGCCTTTT
GACAGGATTGCTCGGCAATCGGTTACTCTTGACGCCATTAGATGGACTCA
CAGCCACGCAATCGCGAGCTGATCTTCTCGGGGTAGCAACGAGTGCTATG
CTGATTCTGTACGGACTAGCAAGAACAGAGATTTCTGAAAAACGAGCGCG
AGTGGAGATGGGTGGGGTGGACGTTTCAACAGGCTTTGATGGGTTGCGGG
GAGTGAGTGTGGAGCGCGGATCTCGAGCTCTTCTTGACGGTGTTCAGGGC
GTCAGAAGTGTAGCTGTTGTGGTTGGCGGTGAGGGGAGATACTTTATGGG
CAAGTTCAGAGATGAAAAGCCGGTTCTTGCCGTCAAGAAGGAGGGGGTCA
TTTCGAAGGCATTAAACTCCGGAAATCGTGCATACTTGGCTGATATGAAG
GTCGTTCCCGTACGAGAGACTGAATTTGGATTCCTTCCAAAAGAGTGTCA
GTCTGTGCTTGTGCAGCCTGTAAACGAAGATGTCTGTGTCATTGTCGCAG
CAGATCGTCCTAGGCCATTTACAGGACAAGACTTTGGGTGGACTCAGGCC
ATATGCGATCGAATTGGAGCTTCATTGATGGGTCATAGCAAAGAAACCAT
AAAGGGTGTTTAG
back to top