Ggra2373.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2373.t1
Unique NameGgra2373.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length370
Homology
BLAST of Ggra2373.t1 vs. uniprot
Match: A0A2V3II78 (E3 ubiquitin-protein ligase SDIR1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II78_9FLOR)

HSP 1 Score: 211 bits (538), Expect = 1.210e-61
Identity = 114/264 (43.18%), Postives = 157/264 (59.47%), Query Frame = 0
Query:   89 LNNNAMVPYNLIALILSLIVLARNSNVDAGKLKTWLIVFVCVSSVRIIARYILRRLHWSAMHFSFVVCHIIDTAIYLAYISWFFVGIAYLVEYKDQPEVRASFLYIFIACIVALELTFXXXXXXXXXXXXXXXASPVHRRPPLGATAEDLSKLPSYKF-VPRQ-------EDVENPPPEGTNVCSICLCDFGEEELLRELPCPSGKHVFHAACVDEWLMRRISCPICREDPLRTIREQQEEQSNREPSVT--TASRSRRARFGM 342
            L+ + +  ++ I L  SLI + + +N     L+ WLIVF+ +++VR+I R ILR  HW      +  CH+ID  ++L YISW FVGIAYLV  + + + R   L+ FIA ++A EL                  SPV  RP   AT ++L KLPSYK+ +P         + V  P  +  N CSICL DF  +EL+RELPCP+GKH FHAACVD+WLM+R+SCPICREDPLR IR+ Q+ Q +R  +     ++R RR  F +
Sbjct:   76 LSTSFLALHSFIVLTFSLIFVLQYANRPPSSLRVWLIVFISLTTVRLIFRAILRNAHWHTRPPLYAFCHLIDATLFLVYISWLFVGIAYLVNTRKENDARP--LFSFIAALIAFELFIFLVYLLLAFAIFFFAVSPVRDRPGTAATKQELDKLPSYKYKLPSPSAHPHPAQPVSQPADDSNNTCSICLSDFAHDELIRELPCPTGKHRFHAACVDQWLMQRLSCPICREDPLREIRQAQQSQPDRHLTAAQNASTRPRRTFFNL 337          
BLAST of Ggra2373.t1 vs. uniprot
Match: LOW QUALITY PROTEIN: RING-H2 finger protein ATL70-like n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E20B56 (LOW QUALITY PROTEIN: RING-H2 finger protein ATL70-like n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E20B56)

HSP 1 Score: 77.4 bits (189), Expect = 3.400e-13
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 0
Query:  237 DLSKLPSYKFVPRQEDVENPPPEGTNVCSICLCDFGEEELLRELPCPSGKHVFHAACVDEWLMRRISCPICREDPL 312
            D + L S++ V   E     P  G + CS+CL D+G+EELLR LP     HVFHA CVD WL R  +CP+CR  P+
Sbjct:   90 DEATLKSWEKVTFAEAKRRDPRAGDDGCSVCLADYGDEELLRLLP--ECGHVFHAKCVDPWLRRHPTCPVCRASPV 163          
BLAST of Ggra2373.t1 vs. uniprot
Match: putative RING-H2 finger protein ATL69 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI000904CB5C (putative RING-H2 finger protein ATL69 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI000904CB5C)

HSP 1 Score: 75.5 bits (184), Expect = 1.270e-12
Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = 0
Query:  237 DLSKLPSYKFVPRQEDVENPPPEGTNVCSICLCDFGEEELLRELPCPSGKHVFHAACVDEWLMRRISCPICREDP 311
            D   + S+  V   E +  P P  TN+C+ICLC++  ++L+R +P    KH FHA CVDEWL +  +CPICR+ P
Sbjct:   71 DQPVIESFPTVVLGESMRLPSPINTNLCAICLCEYCAKDLVRCIP--ECKHCFHADCVDEWLRKSGTCPICRKSP 143          
BLAST of Ggra2373.t1 vs. uniprot
Match: A0A2Z7BZF4 (RING-type domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BZF4_9LAMI)

HSP 1 Score: 76.6 bits (187), Expect = 2.520e-12
Identity = 36/77 (46.75%), Postives = 43/77 (55.84%), Query Frame = 0
Query:  238 LSKLPSYKFVPRQEDVENPPPEGTNVCSICLCDFGEEELLRELPCPSGKHVFHAACVDEWLMRRISCPICREDPLRT 314
            ++  P Y F  R  +V N       +CSICLCD+ E E+LR LP    KH FH  CVD WL    SCP+CR  PL T
Sbjct:  113 INSYPKYVFSRRNGNVGND-----TICSICLCDYREAEMLRMLP--DCKHSFHVTCVDAWLKLNASCPVCRNSPLPT 182          
BLAST of Ggra2373.t1 vs. uniprot
Match: A0A7C8YM30 (RING-type domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8YM30_OPUST)

HSP 1 Score: 73.2 bits (178), Expect = 4.150e-12
Identity = 34/86 (39.53%), Postives = 49/86 (56.98%), Query Frame = 0
Query:  230 PLGATAEDLSKLPSYKFVPRQEDVENPPPEGTN-VCSICLCDFGEEELLRELPCPSGKHVFHAACVDEWLMRRISCPICREDPLRT 314
            P+G     +   P ++F   + ++E+   +  N +CSICLCD+ E E+LR +P    KH FH  C+D WL    SCP+CR  PL T
Sbjct:   34 PIGLDRAVIHSYPKFQF--HKNNLEHSSEDTNNSMCSICLCDYKEGEMLRMMP--DCKHYFHLCCLDAWLKLNGSCPVCRNSPLPT 115          
BLAST of Ggra2373.t1 vs. uniprot
Match: A0A3B6UC50 (RING-type domain-containing protein n=1 Tax=Triticum aestivum TaxID=4565 RepID=A0A3B6UC50_WHEAT)

HSP 1 Score: 72.8 bits (177), Expect = 8.670e-12
Identity = 34/81 (41.98%), Postives = 44/81 (54.32%), Query Frame = 0
Query:  252 DVENPPPEGTNVCSICLCDFGEEELLRELPCPSGKHVFHAACVDEWLMRRISCPICREDPLRTIREQQEEQSNREPSVTTA 332
            D + PP +    C++CL ++ + + LR LP    KHVFH  CVDEWL RR SCP+CR  P               P+VTTA
Sbjct:   91 DGDQPPDDTQTTCAVCLAEYADADELRRLP--GCKHVFHRLCVDEWLRRRPSCPLCRTSP---------------PAVTTA 154          
BLAST of Ggra2373.t1 vs. uniprot
Match: A0A2G9HRV2 (RING-type domain-containing protein n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9HRV2_9LAMI)

HSP 1 Score: 73.9 bits (180), Expect = 9.270e-12
Identity = 34/77 (44.16%), Postives = 42/77 (54.55%), Query Frame = 0
Query:  238 LSKLPSYKFVPRQEDVENPPPEGTNVCSICLCDFGEEELLRELPCPSGKHVFHAACVDEWLMRRISCPICREDPLRT 314
            ++  P + F  R     N   E   VCSICLC++ E E+LR LP    +H FH  CVD WL    SCP+CR  PL T
Sbjct:  114 INSYPKFAFTKR-----NGNGESDTVCSICLCEYRESEMLRMLP--DCRHYFHLMCVDAWLKLNASCPVCRNSPLPT 183          
BLAST of Ggra2373.t1 vs. uniprot
Match: A0A0V0H729 (Putative RING-H2 finger protein ATL67-like (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0H729_SOLCH)

HSP 1 Score: 71.6 bits (174), Expect = 1.370e-11
Identity = 30/52 (57.69%), Postives = 34/52 (65.38%), Query Frame = 0
Query:  263 VCSICLCDFGEEELLRELPCPSGKHVFHAACVDEWLMRRISCPICREDPLRT 314
            VCSICLCD+ E E+LR LP    KH FH  C+D WL    SCP+CR  PL T
Sbjct:   64 VCSICLCDYKEAEMLRMLP--ECKHYFHVMCIDAWLKLNASCPVCRNSPLPT 113          
BLAST of Ggra2373.t1 vs. uniprot
Match: A0A485KSF0 (Aste57867_11189 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KSF0_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.450e-11
Identity = 35/93 (37.63%), Postives = 52/93 (55.91%), Query Frame = 0
Query:  224 PVHRR------PPLGATAEDLSKLPSYKFVPRQEDVENPPPEGTNVCSICLCDFGEEELLRELPCPSGKHVFHAACVDEWLMRRISCPICRED 310
            P+H R      PP G +  +++      F P+ +       +G   CSICL DF E E+LR+LPC    H +H AC+DEWL++  +CP+C+ D
Sbjct:  436 PIHVRIVTRPLPPQGLSKAEITAFKLMPFEPKADKTNTGSSDG---CSICLVDFSENEVLRQLPC---GHTYHPACIDEWLVKSPACPLCKRD 522          
BLAST of Ggra2373.t1 vs. uniprot
Match: A0A7J8S390 (RING-type domain-containing protein (Fragment) n=1 Tax=Gossypium davidsonii TaxID=34287 RepID=A0A7J8S390_GOSDV)

HSP 1 Score: 70.1 bits (170), Expect = 2.170e-11
Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 0
Query:  260 GTNVCSICLCDFGEEELLRELPCPSGKHVFHAACVDEWLMRRISCPICREDPLRT 314
            G  +CSICLC++ E E+LR +P    +H FH  C+D WL    SCP+CR  PL T
Sbjct:   20 GNTICSICLCEYRESEMLRMMP--ECRHCFHVTCIDAWLKLNGSCPVCRNSPLPT 72          
The following BLAST results are available for this feature:
BLAST of Ggra2373.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3II781.210e-6143.18E3 ubiquitin-protein ligase SDIR1 n=1 Tax=Gracilar... [more]
LOW QUALITY PROTEIN: RING-H2 finger protein ATL70-like n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E20B563.400e-1347.37LOW QUALITY PROTEIN: RING-H2 finger protein ATL70-... [more]
putative RING-H2 finger protein ATL69 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI000904CB5C1.270e-1244.00putative RING-H2 finger protein ATL69 n=1 Tax=Nico... [more]
A0A2Z7BZF42.520e-1246.75RING-type domain-containing protein n=1 Tax=Dorcoc... [more]
A0A7C8YM304.150e-1239.53RING-type domain-containing protein (Fragment) n=1... [more]
A0A3B6UC508.670e-1241.98RING-type domain-containing protein n=1 Tax=Tritic... [more]
A0A2G9HRV29.270e-1244.16RING-type domain-containing protein n=1 Tax=Handro... [more]
A0A0V0H7291.370e-1157.69Putative RING-H2 finger protein ATL67-like (Fragme... [more]
A0A485KSF01.450e-1137.63Aste57867_11189 protein n=1 Tax=Aphanomyces stella... [more]
A0A7J8S3902.170e-1149.09RING-type domain-containing protein (Fragment) n=1... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 263..308
e-value: 1.2E-10
score: 41.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 264..308
score: 10.084539
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 223..312
e-value: 2.3E-17
score: 64.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..85
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 317..341
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..77
NoneNo IPR availablePANTHERPTHR46539E3 UBIQUITIN-PROTEIN LIGASE ATL42coord: 183..315
NoneNo IPR availablePANTHERPTHR46539:SF9RING-H2 FINGER PROTEIN ATL56coord: 183..315
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 142..152
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..92
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 93..110
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 222..369
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 191..221
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 122..141
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 153..179
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 180..190
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 111..121
NoneNo IPR availableCDDcd16454RING-H2_PA-TM-RINGcoord: 263..308
e-value: 6.6146E-19
score: 77.3421
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 250..311
NoneNo IPR availableTMHMMTMhelixcoord: 123..142
NoneNo IPR availableTMHMMTMhelixcoord: 157..179
NoneNo IPR availableTMHMMTMhelixcoord: 93..110
NoneNo IPR availableTMHMMTMhelixcoord: 191..222

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:68584..69693 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2373.t1Ggra2373.t1Gracilaria gracilis GNS1m malemRNAtig00000005_pilon 68584..69693 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2373.t1 ID=Ggra2373.t1|Name=Ggra2373.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=370bp
MPVAQSNTAQQASPPSSPSTRPVLAEQATPSAVEQTQVAPSQNAAPSSEV
EQTPQAPDVLDGEQQSQVSQSNLADEEPTQSSRRRSFELNNNAMVPYNLI
ALILSLIVLARNSNVDAGKLKTWLIVFVCVSSVRIIARYILRRLHWSAMH
FSFVVCHIIDTAIYLAYISWFFVGIAYLVEYKDQPEVRASFLYIFIACIV
ALELTFFFFVLLFATIIFFFAASPVHRRPPLGATAEDLSKLPSYKFVPRQ
EDVENPPPEGTNVCSICLCDFGEEELLRELPCPSGKHVFHAACVDEWLMR
RISCPICREDPLRTIREQQEEQSNREPSVTTASRSRRARFGMGGFFSRGR
AVEQDSSAEHTVINIESSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD