Ggra2373.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2373.t1
Unique NameGgra2373.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length370
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:68584..69693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10141.ENSCPOP00000019735
Preferred nameRNF38
PFAMszf-RING_2
Max annot lvl33208|Metazoa
KEGG koko:K19041
GOsGO:0003008,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005929,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007610,GO:0007611,GO:0007613,GO:0007616,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009057,GO:0009636,GO:0009987,GO:0010033,GO:0010498,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0030163,GO:0030534,GO:0031514,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0036126,GO:0036211,GO:0042221,GO:0042493,GO:0042995,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045471,GO:0046677,GO:0046872,GO:0046914,GO:0048149,GO:0050877,GO:0050890,GO:0050896,GO:0051603,GO:0061630,GO:0061659,GO:0070013,GO:0070647,GO:0071704,GO:0097223,GO:0097305,GO:0097729,GO:0120025,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901700
Evalue2.04e-14
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota,38CVJ@33154|Opisthokonta,3BGBB@33208|Metazoa,3CYFH@33213|Bilateria,481FC@7711|Chordata,48XZ4@7742|Vertebrata,3J7GY@40674|Mammalia,35D83@314146|Euarchontoglires,4PWCU@9989|Rodentia
EC2.3.2.27
DescriptionRING finger protein 38
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2373Ggra2373Gracilaria gracilis GNS1m malegenetig00000005_pilon 68584..69693 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2373.t1.start1Ggra2373.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 68584..68586 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2373.t1.CDS1Ggra2373.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 68584..69693 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2373.t1.exon1Ggra2373.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 68584..69693 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2373.t1.stop1Ggra2373.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 69691..69693 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2373.t1Ggra2373.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 68584..69693 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2373.t1 ID=Ggra2373.t1|Name=Ggra2373.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=370bp
MPVAQSNTAQQASPPSSPSTRPVLAEQATPSAVEQTQVAPSQNAAPSSEV
EQTPQAPDVLDGEQQSQVSQSNLADEEPTQSSRRRSFELNNNAMVPYNLI
ALILSLIVLARNSNVDAGKLKTWLIVFVCVSSVRIIARYILRRLHWSAMH
FSFVVCHIIDTAIYLAYISWFFVGIAYLVEYKDQPEVRASFLYIFIACIV
ALELTFFFFVLLFATIIFFFAASPVHRRPPLGATAEDLSKLPSYKFVPRQ
EDVENPPPEGTNVCSICLCDFGEEELLRELPCPSGKHVFHAACVDEWLMR
RISCPICREDPLRTIREQQEEQSNREPSVTTASRSRRARFGMGGFFSRGR
AVEQDSSAEHTVINIESSS*
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spliced messenger RNA

>Ggra2373.t1 ID=Ggra2373.t1|Name=Ggra2373.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1110bp|location=Sequence derived from alignment at tig00000005_pilon:68584..69693+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGTCGCCCAGTCTAACACGGCGCAACAAGCTTCGCCACCCTCCTC
TCCTTCCACACGGCCAGTTTTAGCGGAACAGGCTACCCCTTCGGCCGTCG
AGCAAACCCAAGTTGCTCCCTCTCAAAATGCAGCTCCCTCATCCGAAGTG
GAACAAACGCCTCAAGCACCCGATGTGCTCGATGGAGAGCAGCAGTCGCA
AGTCTCTCAGTCTAATCTTGCCGATGAGGAACCCACTCAATCCTCGCGAC
GGCGATCCTTTGAACTCAACAACAACGCGATGGTTCCGTACAACCTCATC
GCGCTAATTCTTTCATTAATTGTTCTCGCGCGCAACTCCAACGTCGATGC
GGGCAAACTAAAGACCTGGTTAATCGTATTCGTTTGTGTGAGCTCCGTGC
GAATCATCGCTCGCTACATTTTGCGCCGACTCCATTGGAGTGCCATGCAC
TTCTCGTTTGTTGTTTGCCATATCATTGATACAGCCATCTACCTTGCTTA
CATATCTTGGTTTTTCGTCGGTATTGCGTATCTAGTGGAATACAAGGACC
AGCCTGAGGTCCGCGCAAGTTTCCTCTATATATTCATAGCTTGTATCGTT
GCTCTCGAGCTCACGTTCTTTTTCTTTGTCTTACTGTTTGCGACTATCAT
CTTTTTCTTTGCCGCATCCCCGGTGCACAGGCGTCCTCCCTTGGGCGCAA
CCGCCGAGGACCTTTCCAAGTTACCTTCTTATAAGTTCGTACCGCGTCAA
GAAGATGTCGAAAACCCCCCACCTGAAGGTACCAACGTCTGCTCAATATG
TCTGTGTGACTTCGGGGAAGAGGAATTACTTCGTGAGCTTCCATGTCCAT
CGGGAAAACATGTATTCCATGCTGCCTGTGTCGATGAATGGCTGATGCGA
CGAATATCATGCCCGATTTGTCGTGAAGATCCGCTGCGAACTATTCGAGA
ACAACAAGAGGAGCAATCAAATCGTGAACCCTCTGTTACTACAGCTTCTA
GGTCGCGTCGCGCGAGGTTCGGCATGGGCGGCTTTTTCTCACGCGGTCGT
GCTGTTGAACAGGATTCGTCTGCGGAACACACTGTAATCAACATTGAATC
ATCTTCCTAG
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protein sequence of Ggra2373.t1

>Ggra2373.t1 ID=Ggra2373.t1|Name=Ggra2373.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=370bp
MPVAQSNTAQQASPPSSPSTRPVLAEQATPSAVEQTQVAPSQNAAPSSEV
EQTPQAPDVLDGEQQSQVSQSNLADEEPTQSSRRRSFELNNNAMVPYNLI
ALILSLIVLARNSNVDAGKLKTWLIVFVCVSSVRIIARYILRRLHWSAMH
FSFVVCHIIDTAIYLAYISWFFVGIAYLVEYKDQPEVRASFLYIFIACIV
ALELTFFFFVLLFATIIFFFAASPVHRRPPLGATAEDLSKLPSYKFVPRQ
EDVENPPPEGTNVCSICLCDFGEEELLRELPCPSGKHVFHAACVDEWLMR
RISCPICREDPLRTIREQQEEQSNREPSVTTASRSRRARFGMGGFFSRGR
AVEQDSSAEHTVINIESSS*
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mRNA from alignment at tig00000005_pilon:68584..69693+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2373.t1 ID=Ggra2373.t1|Name=Ggra2373.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1110bp|location=Sequence derived from alignment at tig00000005_pilon:68584..69693+ (Gracilaria gracilis GNS1m male)
ATGCCTGTCGCCCAGTCTAACACGGCGCAACAAGCTTCGCCACCCTCCTC
TCCTTCCACACGGCCAGTTTTAGCGGAACAGGCTACCCCTTCGGCCGTCG
AGCAAACCCAAGTTGCTCCCTCTCAAAATGCAGCTCCCTCATCCGAAGTG
GAACAAACGCCTCAAGCACCCGATGTGCTCGATGGAGAGCAGCAGTCGCA
AGTCTCTCAGTCTAATCTTGCCGATGAGGAACCCACTCAATCCTCGCGAC
GGCGATCCTTTGAACTCAACAACAACGCGATGGTTCCGTACAACCTCATC
GCGCTAATTCTTTCATTAATTGTTCTCGCGCGCAACTCCAACGTCGATGC
GGGCAAACTAAAGACCTGGTTAATCGTATTCGTTTGTGTGAGCTCCGTGC
GAATCATCGCTCGCTACATTTTGCGCCGACTCCATTGGAGTGCCATGCAC
TTCTCGTTTGTTGTTTGCCATATCATTGATACAGCCATCTACCTTGCTTA
CATATCTTGGTTTTTCGTCGGTATTGCGTATCTAGTGGAATACAAGGACC
AGCCTGAGGTCCGCGCAAGTTTCCTCTATATATTCATAGCTTGTATCGTT
GCTCTCGAGCTCACGTTCTTTTTCTTTGTCTTACTGTTTGCGACTATCAT
CTTTTTCTTTGCCGCATCCCCGGTGCACAGGCGTCCTCCCTTGGGCGCAA
CCGCCGAGGACCTTTCCAAGTTACCTTCTTATAAGTTCGTACCGCGTCAA
GAAGATGTCGAAAACCCCCCACCTGAAGGTACCAACGTCTGCTCAATATG
TCTGTGTGACTTCGGGGAAGAGGAATTACTTCGTGAGCTTCCATGTCCAT
CGGGAAAACATGTATTCCATGCTGCCTGTGTCGATGAATGGCTGATGCGA
CGAATATCATGCCCGATTTGTCGTGAAGATCCGCTGCGAACTATTCGAGA
ACAACAAGAGGAGCAATCAAATCGTGAACCCTCTGTTACTACAGCTTCTA
GGTCGCGTCGCGCGAGGTTCGGCATGGGCGGCTTTTTCTCACGCGGTCGT
GCTGTTGAACAGGATTCGTCTGCGGAACACACTGTAATCAACATTGAATC
ATCTTCCTAG
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Coding sequence (CDS) from alignment at tig00000005_pilon:68584..69693+

>Ggra2373.t1 ID=Ggra2373.t1|Name=Ggra2373.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1110bp|location=Sequence derived from alignment at tig00000005_pilon:68584..69693+ (Gracilaria gracilis GNS1m male)
ATGCCTGTCGCCCAGTCTAACACGGCGCAACAAGCTTCGCCACCCTCCTC
TCCTTCCACACGGCCAGTTTTAGCGGAACAGGCTACCCCTTCGGCCGTCG
AGCAAACCCAAGTTGCTCCCTCTCAAAATGCAGCTCCCTCATCCGAAGTG
GAACAAACGCCTCAAGCACCCGATGTGCTCGATGGAGAGCAGCAGTCGCA
AGTCTCTCAGTCTAATCTTGCCGATGAGGAACCCACTCAATCCTCGCGAC
GGCGATCCTTTGAACTCAACAACAACGCGATGGTTCCGTACAACCTCATC
GCGCTAATTCTTTCATTAATTGTTCTCGCGCGCAACTCCAACGTCGATGC
GGGCAAACTAAAGACCTGGTTAATCGTATTCGTTTGTGTGAGCTCCGTGC
GAATCATCGCTCGCTACATTTTGCGCCGACTCCATTGGAGTGCCATGCAC
TTCTCGTTTGTTGTTTGCCATATCATTGATACAGCCATCTACCTTGCTTA
CATATCTTGGTTTTTCGTCGGTATTGCGTATCTAGTGGAATACAAGGACC
AGCCTGAGGTCCGCGCAAGTTTCCTCTATATATTCATAGCTTGTATCGTT
GCTCTCGAGCTCACGTTCTTTTTCTTTGTCTTACTGTTTGCGACTATCAT
CTTTTTCTTTGCCGCATCCCCGGTGCACAGGCGTCCTCCCTTGGGCGCAA
CCGCCGAGGACCTTTCCAAGTTACCTTCTTATAAGTTCGTACCGCGTCAA
GAAGATGTCGAAAACCCCCCACCTGAAGGTACCAACGTCTGCTCAATATG
TCTGTGTGACTTCGGGGAAGAGGAATTACTTCGTGAGCTTCCATGTCCAT
CGGGAAAACATGTATTCCATGCTGCCTGTGTCGATGAATGGCTGATGCGA
CGAATATCATGCCCGATTTGTCGTGAAGATCCGCTGCGAACTATTCGAGA
ACAACAAGAGGAGCAATCAAATCGTGAACCCTCTGTTACTACAGCTTCTA
GGTCGCGTCGCGCGAGGTTCGGCATGGGCGGCTTTTTCTCACGCGGTCGT
GCTGTTGAACAGGATTCGTCTGCGGAACACACTGTAATCAACATTGAATC
ATCTTCCTAG
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