Ggra2360.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2360.t1
Unique NameGgra2360.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length206
Homology
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BLAST of Ggra2360.t1 vs. uniprot
Match: A0A2V3II57 (PRA1 family protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II57_9FLOR)

HSP 1 Score: 276 bits (706), Expect = 6.960e-92
Identity = 140/206 (67.96%), Postives = 167/206 (81.07%), Query Frame = 0 
Query:    1 MVTQTELPTTATPPXXEEQSQPR-RFALPSWITAPVESLFAAVGNSTSTASSWITTRGARATSHARPWLEFFDLSAFGLPDGGIGGCVDRLKLNIPYFLFNYVMIGLVMTVLSVITQIGALIGTLIVVWVYFQFFGSEHENEEFELMGFSLDNSEKLGLLVLLGGLIFWLTAGGIGLFFEVLTAITFVALLHGSLRKPHPDSIPPV 205
            MVTQ +LP  AT    E+   PR  F  PSW+T P+ES F+ VGNST + SSW+TTRG RATSHARPWLEFFDLSAFGL +GG  G  +RLK+N PYFLFNYV+IGL ++V+SVIT+  ALIG + +VWVYFQFFG+EH NEE++ MGF+LD+SEKLGLLVL+GGL+FWLTAGGI +FF VLTAI FVAL+HGS RKP PD+IP V
Sbjct:    1 MVTQNDLPPPATA-NAEDGPPPRGSFLFPSWVTGPLESFFSVVGNSTKSVSSWVTTRGGRATSHARPWLEFFDLSAFGLAEGGFSGHFERLKINFPYFLFNYVLIGLTLSVISVITKPLALIGAIAIVWVYFQFFGTEHVNEEYQFMGFALDSSEKLGLLVLMGGLVFWLTAGGIEIFFSVLTAIAFVALVHGSFRKPSPDAIPAV 205
[Close]
BLAST of Ggra2360.t1 vs. uniprot
Match: A0A2V3IPM0 (PRA1 family protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPM0_9FLOR)

HSP 1 Score: 63.2 bits (152), Expect = 8.440e-9
Identity = 59/199 (29.65%), Postives = 97/199 (48.74%), Query Frame = 0 
Query:    1 MVTQTELPTTA-TPPXXEEQSQPRRFALPSWITAPVESLFAAVGNSTSTASSWITTRGARATSHARPWLEFFDLSAFGLPDGGIGGCVDRLKLNIPYFLFNYVMIGLVMTVLSVITQIGALIGTLIVVWVYFQFFGSEHENEEFELMGFSLDNSEKLGLLVLLGGLIFWLTAGGIGLFFEVLTAIT-FVALLHGSLRKP 197
            M T TEL TT+  PP   E +     + PS     + +L    G   S  S  +  R     S +RPW EF + S    P+       DR++ N  Y+ FNY++I LV++ L+++T   A +G + +   YF  +    E   +   G ++DN+ K  ++ +   ++ WLT  G G  F VL A+   ++L H ++R+P
Sbjct:    1 MATFTELKTTSEVPPAPAENAATTSASAPS----AIGTLSRVAGLMPSLDS--LKDRLGDVWSRSRPWSEFMNTSQMCKPE--FNELFDRVRENGEYYAFNYLVILLVISALTILTSPLAFLGGIFIALAYFYLYFLNPEPLVYG--GITVDNNIKAAVITVFSLVMLWLT--GAGATFTVLVAVVGIISLTHAAVRRP 187
The following BLAST results are available for this feature:
BLAST of Ggra2360.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3II576.960e-9267.96PRA1 family protein n=1 Tax=Gracilariopsis chorda ... [more]
A0A2V3IPM08.440e-929.65PRA1 family protein n=1 Tax=Gracilariopsis chorda ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004895Prenylated rab acceptor PRA1PFAMPF03208PRA1coord: 61..198
e-value: 1.3E-23
score: 83.2
IPR004895Prenylated rab acceptor PRA1PANTHERPTHR19317PRENYLATED RAB ACCEPTOR 1-RELATEDcoord: 11..199
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 190..205
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 132..155
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..97
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 156..189
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 98..131
NoneNo IPR availableTMHMMTMhelixcoord: 156..178
NoneNo IPR availableTMHMMTMhelixcoord: 97..131

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:31555..32172 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2360.t1Ggra2360.t1Gracilaria gracilis GNS1m malemRNAtig00000005_pilon 31555..32172 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2360.t1 ID=Ggra2360.t1|Name=Ggra2360.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=206bp
MVTQTELPTTATPPPPEEQSQPRRFALPSWITAPVESLFAAVGNSTSTAS
SWITTRGARATSHARPWLEFFDLSAFGLPDGGIGGCVDRLKLNIPYFLFN
YVMIGLVMTVLSVITQIGALIGTLIVVWVYFQFFGSEHENEEFELMGFSL
DNSEKLGLLVLLGGLIFWLTAGGIGLFFEVLTAITFVALLHGSLRKPHPD
SIPPV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004895Prenylated_rab_accept_PRA1