Ggra2360.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2360.t1
Unique NameGgra2360.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length206
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:31555..32172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3694.POPTR_0019s14510.1
PFAMsPRA1
Max annot lvl35493|Streptophyta
KEGG koko:K20359
KEGG TC9.A.49.1
Evalue4.98e-09
EggNOG OGsKOG3142@1|root,KOG3142@2759|Eukaryota,37RJ6@33090|Viridiplantae,3GCGI@35493|Streptophyta,4JMK3@91835|fabids
DescriptionMay be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments
COG categoryU
BRITEko00000,ko02000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2360Ggra2360Gracilaria gracilis GNS1m malegenetig00000005_pilon 31555..32172 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2360.t1.start1Ggra2360.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 31555..31557 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2360.t1.CDS1Ggra2360.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 31555..32172 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2360.t1.exon1Ggra2360.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 31555..32172 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2360.t1.stop1Ggra2360.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 32170..32172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2360.t1Ggra2360.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 31555..32172 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2360.t1 ID=Ggra2360.t1|Name=Ggra2360.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=206bp
MVTQTELPTTATPPPPEEQSQPRRFALPSWITAPVESLFAAVGNSTSTAS
SWITTRGARATSHARPWLEFFDLSAFGLPDGGIGGCVDRLKLNIPYFLFN
YVMIGLVMTVLSVITQIGALIGTLIVVWVYFQFFGSEHENEEFELMGFSL
DNSEKLGLLVLLGGLIFWLTAGGIGLFFEVLTAITFVALLHGSLRKPHPD
SIPPV*
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spliced messenger RNA

>Ggra2360.t1 ID=Ggra2360.t1|Name=Ggra2360.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=618bp|location=Sequence derived from alignment at tig00000005_pilon:31555..32172+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCACCCAAACGGAACTTCCTACGACAGCGACTCCGCCTCCGCCAGA
GGAGCAATCTCAACCGAGGCGATTTGCCCTACCAAGCTGGATTACAGCTC
CAGTAGAGTCACTGTTCGCCGCAGTAGGGAACTCTACATCGACCGCTTCC
TCGTGGATCACCACTCGTGGTGCACGCGCAACGAGCCATGCTCGGCCATG
GCTTGAGTTCTTTGACCTGTCTGCCTTTGGACTTCCGGATGGTGGTATTG
GGGGATGCGTAGACCGGCTCAAACTTAACATTCCGTACTTCCTGTTTAAT
TACGTCATGATTGGGCTTGTAATGACAGTTTTGAGCGTCATCACTCAGAT
AGGAGCGTTGATTGGAACACTTATTGTTGTGTGGGTGTACTTTCAGTTCT
TCGGAAGCGAGCATGAGAATGAAGAGTTCGAGTTAATGGGCTTTTCTCTT
GACAACTCTGAGAAGTTAGGCTTGTTAGTGTTGTTGGGTGGATTGATCTT
CTGGCTTACGGCCGGTGGGATTGGGTTATTCTTCGAAGTCCTCACAGCCA
TAACGTTTGTTGCCCTTTTGCATGGAAGTCTCAGAAAGCCGCATCCGGAC
TCGATTCCTCCAGTTTAA
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protein sequence of Ggra2360.t1

>Ggra2360.t1 ID=Ggra2360.t1|Name=Ggra2360.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=206bp
MVTQTELPTTATPPPPEEQSQPRRFALPSWITAPVESLFAAVGNSTSTAS
SWITTRGARATSHARPWLEFFDLSAFGLPDGGIGGCVDRLKLNIPYFLFN
YVMIGLVMTVLSVITQIGALIGTLIVVWVYFQFFGSEHENEEFELMGFSL
DNSEKLGLLVLLGGLIFWLTAGGIGLFFEVLTAITFVALLHGSLRKPHPD
SIPPV*
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mRNA from alignment at tig00000005_pilon:31555..32172+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2360.t1 ID=Ggra2360.t1|Name=Ggra2360.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=618bp|location=Sequence derived from alignment at tig00000005_pilon:31555..32172+ (Gracilaria gracilis GNS1m male)
ATGGTCACCCAAACGGAACTTCCTACGACAGCGACTCCGCCTCCGCCAGA
GGAGCAATCTCAACCGAGGCGATTTGCCCTACCAAGCTGGATTACAGCTC
CAGTAGAGTCACTGTTCGCCGCAGTAGGGAACTCTACATCGACCGCTTCC
TCGTGGATCACCACTCGTGGTGCACGCGCAACGAGCCATGCTCGGCCATG
GCTTGAGTTCTTTGACCTGTCTGCCTTTGGACTTCCGGATGGTGGTATTG
GGGGATGCGTAGACCGGCTCAAACTTAACATTCCGTACTTCCTGTTTAAT
TACGTCATGATTGGGCTTGTAATGACAGTTTTGAGCGTCATCACTCAGAT
AGGAGCGTTGATTGGAACACTTATTGTTGTGTGGGTGTACTTTCAGTTCT
TCGGAAGCGAGCATGAGAATGAAGAGTTCGAGTTAATGGGCTTTTCTCTT
GACAACTCTGAGAAGTTAGGCTTGTTAGTGTTGTTGGGTGGATTGATCTT
CTGGCTTACGGCCGGTGGGATTGGGTTATTCTTCGAAGTCCTCACAGCCA
TAACGTTTGTTGCCCTTTTGCATGGAAGTCTCAGAAAGCCGCATCCGGAC
TCGATTCCTCCAGTTTAA
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Coding sequence (CDS) from alignment at tig00000005_pilon:31555..32172+

>Ggra2360.t1 ID=Ggra2360.t1|Name=Ggra2360.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=618bp|location=Sequence derived from alignment at tig00000005_pilon:31555..32172+ (Gracilaria gracilis GNS1m male)
ATGGTCACCCAAACGGAACTTCCTACGACAGCGACTCCGCCTCCGCCAGA
GGAGCAATCTCAACCGAGGCGATTTGCCCTACCAAGCTGGATTACAGCTC
CAGTAGAGTCACTGTTCGCCGCAGTAGGGAACTCTACATCGACCGCTTCC
TCGTGGATCACCACTCGTGGTGCACGCGCAACGAGCCATGCTCGGCCATG
GCTTGAGTTCTTTGACCTGTCTGCCTTTGGACTTCCGGATGGTGGTATTG
GGGGATGCGTAGACCGGCTCAAACTTAACATTCCGTACTTCCTGTTTAAT
TACGTCATGATTGGGCTTGTAATGACAGTTTTGAGCGTCATCACTCAGAT
AGGAGCGTTGATTGGAACACTTATTGTTGTGTGGGTGTACTTTCAGTTCT
TCGGAAGCGAGCATGAGAATGAAGAGTTCGAGTTAATGGGCTTTTCTCTT
GACAACTCTGAGAAGTTAGGCTTGTTAGTGTTGTTGGGTGGATTGATCTT
CTGGCTTACGGCCGGTGGGATTGGGTTATTCTTCGAAGTCCTCACAGCCA
TAACGTTTGTTGCCCTTTTGCATGGAAGTCTCAGAAAGCCGCATCCGGAC
TCGATTCCTCCAGTTTAA
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