Ggra2347.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2347.t1
Unique NameGgra2347.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length491
Homology
BLAST of Ggra2347.t1 vs. uniprot
Match: A0A2V3ISV4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISV4_9FLOR)

HSP 1 Score: 323 bits (827), Expect = 4.160e-102
Identity = 259/505 (51.29%), Postives = 306/505 (60.59%), Query Frame = 0
Query:    4 LSSLVLLHAVAALLSIAHA---RNGFYSAMCIIFQERCPLGMQTESSGCKAVSTLEQAMECLESACSHCNNDRTEQFPCLNPEIKRICEGGEVRSSIVLSTLSQMMAMAPVPTPVQMTAMEQPASSSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPLPMDEFQMDMGIMDMP--SMDAMSSEEPTMASPEMSMESTPSPEVMSTA-------MYTPMP-------GGDAMMMDGTTMPPMMMDXXXXXXXXXXXXXTRPPTTMPPMTEPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSRCTYSGSDRVTISLGSVAPVDGWVRKSRGGLNGVVFRPDKNHGILRPGTEGEMCFSVRLSDPGDYHLTAVSAAPDRTENNDMWIKSSKPLTLIRKGAVQNGNTDWYKGYQNEGGNKIADHLKTVDNRGHDFVITNVRANESFNLCISGRSYRYEVFKIIVNKCGSARCLSGVSPRGSLIDSAPSTC 489
            L+ L +LHA AAL ++++A   R   YSA+C+   E CP  +Q+ S  CKAV +++Q +ECL+ AC  C + R   FPC      +IC+    R S            APVP+ +      +PA     XXXXXXXXXXXX                      P PM   Q  MG+  MP  + + M SEEP   SPEM +                   +YTP+        G DAM      MPP M  XXXXXX                     XXXXXXXXXXXXXXX    XXXXXXXXXXXXXXXXXXX  + CTY GSDRVTISLGSV P+DGW RKSR G+NGVVFRPDKNHGI++PG EG MCF V+LS  GDY+LTAVSAAPDRTENNDMW+KS KPLTL++KG+ + GNTDWYKGYQN G  KIADHL T+D  GH FVI  VRANE F +C++GRSYRYEVFKI++ KC    CLSG+  RGSLIDS PS+C
Sbjct:    2 LTKLFVLHAFAALFAVSNAMVTRGTLYSALCLAMGEGCPRWVQSGSQECKAVKSVDQTIECLQLACEFCTDVRLGFFPCNRLAESKICDRLATRGS------------APVPSMMSPMVTAEPAMXXXXXXXXXXXXXXXXAYS-------------------PDPMMGMQNMMGVDMMPVNTAEPMVSEEPATPSPEMIVXXXXXXXXXXXXXXXXXMPIYTPVVVTPESPMGSDAM------MPPTMEXXXXXXXMTEAPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMPMXXXXXXXXXXXXXXXXXXXASAGCTYMGSDRVTISLGSVTPLDGWERKSRSGMNGVVFRPDKNHGIVKPGREGVMCFPVKLSMAGDYYLTAVSAAPDRTENNDMWMKSEKPLTLVKKGSPRRGNTDWYKGYQNNGSYKIADHLMTIDRNGHYFVIPGVRANERFTICMAGRSYRYEVFKIVLTKCERETCLSGLPARGSLIDSTPSSC 469          
BLAST of Ggra2347.t1 vs. uniprot
Match: R7QCY0 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCY0_CHOCR)

HSP 1 Score: 136 bits (343), Expect = 8.350e-33
Identity = 64/171 (37.43%), Postives = 101/171 (59.06%), Query Frame = 0
Query:  305 CTYSGS--DRVTISLGSVAPVDGWVRKSRGGLNGVVFRPDKNHGILRPGTEGEMCFSVRLSDPGDYHLTAVSAAPDRTENNDMWIKSSKPLTLIR--KGAVQNGNTDWYKGYQNEGGNKIADHLKTVDNRGHDFVITNVRANESFNLCISGRSYRYEVFKIIVNKCGSARC 471
            C Y G+  +++ I    ++  +GW +++      +++R     G +     G MC  V    PG Y+ TA++ AP  TE+NDMW++ S    L+   KGA ++G + WYKGYQN GG ++AD+L T+DN GH F   NV A  +++LCISGRS ++ V+K+++ KC    C
Sbjct:  126 CAYRGTSGNKIVIPSTGLSAGNGWTKEA----GAIIYRKGDPQGSVDAEGSGTMCVKVMFPSPGKYYFTALTKAPHPTEHNDMWVRISSGFDLVHTSKGAFKSGGSSWYKGYQNRGGMQMADYLLTIDNDGHQFQTKNVAAGPAYSLCISGRSTKFWVYKLVLIKCDGDNC 292          
BLAST of Ggra2347.t1 vs. uniprot
Match: A0A2V3IY45 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IY45_9FLOR)

HSP 1 Score: 101 bits (252), Expect = 2.120e-20
Identity = 60/172 (34.88%), Postives = 92/172 (53.49%), Query Frame = 0
Query:  304 RCTYSGSDR-VTISLGSVAPVDGWVRKSRGGLNGVVFRPDKNHGILRPGTEGEMCFSVRLSDPGDYHLTAVSAAPDRTENNDMWIKSSKPLTLIRKGAVQNGNTDWY--------KGYQNEGGNKIADHLKTVDNRGHDFVITNVRANESFNLCISGRSYRYEVFKIIVNKC 466
            RC + G D+ + + L       GW +      +G+ ++   + GI  PG+ GEMCF   + + G Y+ TA+++AP  T++NDMW++    + L R      G T  Y        K YQN G N+I D L +VD+  H FV   +  NE+  +CISGRS R+ V+K++  KC
Sbjct:  107 RCVWHGRDKELVLDLKFFTAWGGWTQNG----DGLEWKRYLSKGIDEPGS-GEMCFKFAVPEDGFYYFTALTSAPHPTDHNDMWVRIQTGIRLYR------GKTHVYWMTVRKYIKAYQNLGENRINDILSSVDHNPHYFVSEKLMQNETHTVCISGRSSRFTVYKLVFVKC 267          
BLAST of Ggra2347.t1 vs. uniprot
Match: A0A2V3IJ01 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJ01_9FLOR)

HSP 1 Score: 71.6 bits (174), Expect = 1.100e-10
Identity = 50/176 (28.41%), Postives = 85/176 (48.30%), Query Frame = 0
Query:  322 PVDGWVRKSR-GGLNG---VVFRPDKNHGILRPGTEGEMCFSVR-----LSDPGDYHLTAVSAAPDRTENNDMWIKSSKPLTLIRK----------------GAVQNGNTDWYKGYQNEGGNKIADHLKTVDNRGHDFVITNVRANES-FNLCISGRSYRYEVFKIIVNKCGSARC 471
            P  GW  KS   G  G   + ++P  N+G      E  +   ++     ++  G Y +   SAAP  TE+ND+W+   +   ++R+                G +     +W+K YQN+GGN      KTVD+ GH  +   ++A+ S +++ I+GRS ++ V +II+  C  A+C
Sbjct:    8 PGGGWDFKSDFSGYEGSGYLSYKPWSNYGGTEAKPESMLDTRIKTYFFTVNTTGKYRIVLKSAAPHPTEHNDLWMAVPESGAIMRRFGRDVDLTWPASRNERGELMLDGQNWFKVYQNQGGNTWNYGGKTVDHNGHVIITRELKADHSWYSVRIAGRSTQFAVDRIILYLCDGAQC 183          
The following BLAST results are available for this feature:
BLAST of Ggra2347.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3ISV44.160e-10251.29Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QCY08.350e-3337.43Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2V3IY452.120e-2034.88Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IJ011.100e-1028.41Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..490
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000122_piloncontigtig00000122_pilon:403110..404582 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2347.t1Ggra2347.t1Gracilaria gracilis GNS1m malemRNAtig00000122_pilon 403110..404582 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2347.t1 ID=Ggra2347.t1|Name=Ggra2347.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=491bp
MRVLSSLVLLHAVAALLSIAHARNGFYSAMCIIFQERCPLGMQTESSGCK
AVSTLEQAMECLESACSHCNNDRTEQFPCLNPEIKRICEGGEVRSSIVLS
TLSQMMAMAPVPTPVQMTAMEQPASSSPSMAMEPVMTPSEMMPMTPELPS
PDMTAMEPSATPVPLPMDEFQMDMGIMDMPSMDAMSSEEPTMASPEMSME
STPSPEVMSTAMYTPMPGGDAMMMDGTTMPPMMMDEPTTMPPMMMDEPTR
PPTTMPPMTEPMTEPPTTMPPMTEPMTEPPTTMPPMTEPMTEPPTTMPPM
TGSRCTYSGSDRVTISLGSVAPVDGWVRKSRGGLNGVVFRPDKNHGILRP
GTEGEMCFSVRLSDPGDYHLTAVSAAPDRTENNDMWIKSSKPLTLIRKGA
VQNGNTDWYKGYQNEGGNKIADHLKTVDNRGHDFVITNVRANESFNLCIS
GRSYRYEVFKIIVNKCGSARCLSGVSPRGSLIDSAPSTCS*
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