Ggra2347.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2347.t1
Unique Name	Ggra2347.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	491

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000122_pilon	contig	tig00000122_pilon:403110..404582 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2347	Ggra2347	Gracilaria gracilis GNS1m male	gene	tig00000122_pilon 403110..404582 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2347.t1.stop1	Ggra2347.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000122_pilon 403110..403112 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2347.t1.CDS1	Ggra2347.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000122_pilon 403110..404582 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2347.t1.exon1	Ggra2347.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000122_pilon 403110..404582 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2347.t1.start1	Ggra2347.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000122_pilon 404580..404582 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2347.t1	Ggra2347.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000122_pilon 403110..404582 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000122_pilon:403110..404582-
coding sequence from alignment at tig00000122_pilon:403110..404582-

mRNA sequence

>Ggra2347.t1 ID=Ggra2347.t1|Name=Ggra2347.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=491bp
MRVLSSLVLLHAVAALLSIAHARNGFYSAMCIIFQERCPLGMQTESSGCK
AVSTLEQAMECLESACSHCNNDRTEQFPCLNPEIKRICEGGEVRSSIVLS
TLSQMMAMAPVPTPVQMTAMEQPASSSPSMAMEPVMTPSEMMPMTPELPS
PDMTAMEPSATPVPLPMDEFQMDMGIMDMPSMDAMSSEEPTMASPEMSME
STPSPEVMSTAMYTPMPGGDAMMMDGTTMPPMMMDEPTTMPPMMMDEPTR
PPTTMPPMTEPMTEPPTTMPPMTEPMTEPPTTMPPMTEPMTEPPTTMPPM
TGSRCTYSGSDRVTISLGSVAPVDGWVRKSRGGLNGVVFRPDKNHGILRP
GTEGEMCFSVRLSDPGDYHLTAVSAAPDRTENNDMWIKSSKPLTLIRKGA
VQNGNTDWYKGYQNEGGNKIADHLKTVDNRGHDFVITNVRANESFNLCIS
GRSYRYEVFKIIVNKCGSARCLSGVSPRGSLIDSAPSTCS*

spliced messenger RNA

>Ggra2347.t1 ID=Ggra2347.t1|Name=Ggra2347.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1473bp|location=Sequence derived from alignment at tig00000122_pilon:403110..404582- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGTTCTTTCATCGCTCGTGCTGTTGCACGCCGTTGCGGCATTGCT
CTCCATAGCCCACGCCCGGAATGGCTTCTACTCCGCCATGTGCATTATCT
TCCAGGAAAGGTGCCCTCTCGGCATGCAGACCGAGTCAAGCGGCTGCAAG
GCCGTGAGCACCCTCGAACAGGCTATGGAATGTCTCGAATCAGCCTGTTC
GCATTGCAACAACGACCGCACGGAACAATTCCCATGCTTGAACCCGGAGA
TCAAGAGAATATGCGAGGGCGGAGAAGTCCGCAGTTCCATCGTTCTTTCT
ACCCTCTCGCAAATGATGGCAATGGCCCCAGTTCCCACACCTGTTCAGAT
GACCGCCATGGAGCAACCAGCTTCGTCTTCACCCTCCATGGCCATGGAAC
CAGTTATGACTCCTTCGGAAATGATGCCCATGACGCCAGAGCTTCCGTCC
CCGGATATGACCGCCATGGAACCGTCAGCCACTCCAGTACCATTGCCTAT
GGACGAATTCCAAATGGACATGGGAATAATGGATATGCCTTCTATGGACG
CCATGAGCAGCGAGGAGCCTACTATGGCATCCCCAGAAATGTCCATGGAG
TCGACACCATCGCCTGAGGTAATGTCAACAGCTATGTACACCCCAATGCC
TGGCGGAGACGCCATGATGATGGACGGAACAACCATGCCGCCCATGATGA
TGGATGAGCCCACCACTATGCCCCCAATGATGATGGATGAGCCTACCAGA
CCGCCCACGACAATGCCGCCCATGACTGAGCCGATGACTGAACCGCCCAC
GACAATGCCGCCCATGACTGAGCCGATGACCGAACCGCCCACTACAATGC
CGCCCATGACCGAGCCAATGACCGAGCCGCCCACTACAATGCCGCCCATG
ACCGGGTCCCGCTGCACTTATTCTGGCAGTGACAGAGTTACCATTTCCCT
TGGCTCTGTCGCCCCAGTTGACGGATGGGTCCGCAAGAGCAGAGGTGGAC
TAAATGGCGTAGTTTTCCGTCCCGATAAGAATCATGGCATTCTGAGGCCT
GGCACTGAAGGTGAAATGTGCTTCTCAGTTCGATTGTCAGACCCGGGTGA
TTATCACTTGACAGCAGTTTCTGCAGCTCCCGATAGAACAGAGAACAACG
ACATGTGGATCAAGTCGTCGAAACCCTTGACACTCATTAGAAAGGGGGCT
GTGCAAAACGGTAACACTGACTGGTACAAGGGTTATCAGAACGAGGGCGG
CAACAAGATTGCTGACCATTTGAAGACTGTGGACAACCGCGGACATGACT
TCGTCATAACTAACGTGCGTGCAAACGAAAGCTTCAACCTTTGCATCTCT
GGAAGAAGCTATAGATATGAAGTCTTCAAGATCATTGTGAACAAATGCGG
TAGCGCAAGATGCCTGTCTGGTGTTTCGCCACGGGGTTCCTTGATCGACT
CCGCTCCGTCTACTTGCTCTTAG

protein sequence of Ggra2347.t1

>Ggra2347.t1 ID=Ggra2347.t1|Name=Ggra2347.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=491bp
MRVLSSLVLLHAVAALLSIAHARNGFYSAMCIIFQERCPLGMQTESSGCK
AVSTLEQAMECLESACSHCNNDRTEQFPCLNPEIKRICEGGEVRSSIVLS
TLSQMMAMAPVPTPVQMTAMEQPASSSPSMAMEPVMTPSEMMPMTPELPS
PDMTAMEPSATPVPLPMDEFQMDMGIMDMPSMDAMSSEEPTMASPEMSME
STPSPEVMSTAMYTPMPGGDAMMMDGTTMPPMMMDEPTTMPPMMMDEPTR
PPTTMPPMTEPMTEPPTTMPPMTEPMTEPPTTMPPMTEPMTEPPTTMPPM
TGSRCTYSGSDRVTISLGSVAPVDGWVRKSRGGLNGVVFRPDKNHGILRP
GTEGEMCFSVRLSDPGDYHLTAVSAAPDRTENNDMWIKSSKPLTLIRKGA
VQNGNTDWYKGYQNEGGNKIADHLKTVDNRGHDFVITNVRANESFNLCIS
GRSYRYEVFKIIVNKCGSARCLSGVSPRGSLIDSAPSTCS*

mRNA from alignment at tig00000122_pilon:403110..404582-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2347.t1 ID=Ggra2347.t1|Name=Ggra2347.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1473bp|location=Sequence derived from alignment at tig00000122_pilon:403110..404582- (Gracilaria gracilis GNS1m male)
ATGCGTGTTCTTTCATCGCTCGTGCTGTTGCACGCCGTTGCGGCATTGCT
CTCCATAGCCCACGCCCGGAATGGCTTCTACTCCGCCATGTGCATTATCT
TCCAGGAAAGGTGCCCTCTCGGCATGCAGACCGAGTCAAGCGGCTGCAAG
GCCGTGAGCACCCTCGAACAGGCTATGGAATGTCTCGAATCAGCCTGTTC
GCATTGCAACAACGACCGCACGGAACAATTCCCATGCTTGAACCCGGAGA
TCAAGAGAATATGCGAGGGCGGAGAAGTCCGCAGTTCCATCGTTCTTTCT
ACCCTCTCGCAAATGATGGCAATGGCCCCAGTTCCCACACCTGTTCAGAT
GACCGCCATGGAGCAACCAGCTTCGTCTTCACCCTCCATGGCCATGGAAC
CAGTTATGACTCCTTCGGAAATGATGCCCATGACGCCAGAGCTTCCGTCC
CCGGATATGACCGCCATGGAACCGTCAGCCACTCCAGTACCATTGCCTAT
GGACGAATTCCAAATGGACATGGGAATAATGGATATGCCTTCTATGGACG
CCATGAGCAGCGAGGAGCCTACTATGGCATCCCCAGAAATGTCCATGGAG
TCGACACCATCGCCTGAGGTAATGTCAACAGCTATGTACACCCCAATGCC
TGGCGGAGACGCCATGATGATGGACGGAACAACCATGCCGCCCATGATGA
TGGATGAGCCCACCACTATGCCCCCAATGATGATGGATGAGCCTACCAGA
CCGCCCACGACAATGCCGCCCATGACTGAGCCGATGACTGAACCGCCCAC
GACAATGCCGCCCATGACTGAGCCGATGACCGAACCGCCCACTACAATGC
CGCCCATGACCGAGCCAATGACCGAGCCGCCCACTACAATGCCGCCCATG
ACCGGGTCCCGCTGCACTTATTCTGGCAGTGACAGAGTTACCATTTCCCT
TGGCTCTGTCGCCCCAGTTGACGGATGGGTCCGCAAGAGCAGAGGTGGAC
TAAATGGCGTAGTTTTCCGTCCCGATAAGAATCATGGCATTCTGAGGCCT
GGCACTGAAGGTGAAATGTGCTTCTCAGTTCGATTGTCAGACCCGGGTGA
TTATCACTTGACAGCAGTTTCTGCAGCTCCCGATAGAACAGAGAACAACG
ACATGTGGATCAAGTCGTCGAAACCCTTGACACTCATTAGAAAGGGGGCT
GTGCAAAACGGTAACACTGACTGGTACAAGGGTTATCAGAACGAGGGCGG
CAACAAGATTGCTGACCATTTGAAGACTGTGGACAACCGCGGACATGACT
TCGTCATAACTAACGTGCGTGCAAACGAAAGCTTCAACCTTTGCATCTCT
GGAAGAAGCTATAGATATGAAGTCTTCAAGATCATTGTGAACAAATGCGG
TAGCGCAAGATGCCTGTCTGGTGTTTCGCCACGGGGTTCCTTGATCGACT
CCGCTCCGTCTACTTGCTCTTAG

Coding sequence (CDS) from alignment at tig00000122_pilon:403110..404582-

>Ggra2347.t1 ID=Ggra2347.t1|Name=Ggra2347.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1473bp|location=Sequence derived from alignment at tig00000122_pilon:403110..404582- (Gracilaria gracilis GNS1m male)
ATGCGTGTTCTTTCATCGCTCGTGCTGTTGCACGCCGTTGCGGCATTGCT
CTCCATAGCCCACGCCCGGAATGGCTTCTACTCCGCCATGTGCATTATCT
TCCAGGAAAGGTGCCCTCTCGGCATGCAGACCGAGTCAAGCGGCTGCAAG
GCCGTGAGCACCCTCGAACAGGCTATGGAATGTCTCGAATCAGCCTGTTC
GCATTGCAACAACGACCGCACGGAACAATTCCCATGCTTGAACCCGGAGA
TCAAGAGAATATGCGAGGGCGGAGAAGTCCGCAGTTCCATCGTTCTTTCT
ACCCTCTCGCAAATGATGGCAATGGCCCCAGTTCCCACACCTGTTCAGAT
GACCGCCATGGAGCAACCAGCTTCGTCTTCACCCTCCATGGCCATGGAAC
CAGTTATGACTCCTTCGGAAATGATGCCCATGACGCCAGAGCTTCCGTCC
CCGGATATGACCGCCATGGAACCGTCAGCCACTCCAGTACCATTGCCTAT
GGACGAATTCCAAATGGACATGGGAATAATGGATATGCCTTCTATGGACG
CCATGAGCAGCGAGGAGCCTACTATGGCATCCCCAGAAATGTCCATGGAG
TCGACACCATCGCCTGAGGTAATGTCAACAGCTATGTACACCCCAATGCC
TGGCGGAGACGCCATGATGATGGACGGAACAACCATGCCGCCCATGATGA
TGGATGAGCCCACCACTATGCCCCCAATGATGATGGATGAGCCTACCAGA
CCGCCCACGACAATGCCGCCCATGACTGAGCCGATGACTGAACCGCCCAC
GACAATGCCGCCCATGACTGAGCCGATGACCGAACCGCCCACTACAATGC
CGCCCATGACCGAGCCAATGACCGAGCCGCCCACTACAATGCCGCCCATG
ACCGGGTCCCGCTGCACTTATTCTGGCAGTGACAGAGTTACCATTTCCCT
TGGCTCTGTCGCCCCAGTTGACGGATGGGTCCGCAAGAGCAGAGGTGGAC
TAAATGGCGTAGTTTTCCGTCCCGATAAGAATCATGGCATTCTGAGGCCT
GGCACTGAAGGTGAAATGTGCTTCTCAGTTCGATTGTCAGACCCGGGTGA
TTATCACTTGACAGCAGTTTCTGCAGCTCCCGATAGAACAGAGAACAACG
ACATGTGGATCAAGTCGTCGAAACCCTTGACACTCATTAGAAAGGGGGCT
GTGCAAAACGGTAACACTGACTGGTACAAGGGTTATCAGAACGAGGGCGG
CAACAAGATTGCTGACCATTTGAAGACTGTGGACAACCGCGGACATGACT
TCGTCATAACTAACGTGCGTGCAAACGAAAGCTTCAACCTTTGCATCTCT
GGAAGAAGCTATAGATATGAAGTCTTCAAGATCATTGTGAACAAATGCGG
TAGCGCAAGATGCCTGTCTGGTGTTTCGCCACGGGGTTCCTTGATCGACT
CCGCTCCGTCTACTTGCTCTTAG