Ggra2294.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2294.t1
Unique NameGgra2294.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length351
Homology
BLAST of Ggra2294.t1 vs. uniprot
Match: A0A2V3J3B0 (R-phycoerythrin gamma chain, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3B0_9FLOR)

HSP 1 Score: 390 bits (1002), Expect = 3.440e-132
Identity = 210/348 (60.34%), Postives = 253/348 (72.70%), Query Frame = 0
Query:    1 MESPAFAAPIAIGSTP----FNGKSTICARRAMRTNRVSMLVSSPADSFMNKSQTREAKQAATSTGVYTPQCTEATGGCNTAEATRLASLARSFRLRQMSASSKMKDLYDTRRAAIIAAAGSHVDESYAVSFPARAAATVAGRAEMLRACSRYVVANEPAQQYMFECVDRQYKAVNVPGAVYSVGAYNARQAGDDEVARVAAAATSFRANTLSDKQKAQLRYDASLQAVFTGRGCSYEEEQYMQYPKMAGAIRWGTGAYAADVVGVTGTMGVKMPSVAERIAGVNRDSFFPGYKMREAVERKPKFWEAAPTKYYGGMSGAALEWGIKDVKDKFEDGIAERWQPGWQPK 344
            M S AF  P+ + ST     F  +  + AR A  T  V M ++  AD F N+SQTREAKQ+A S GVYT QCTE T G NTAE +RL+SLARSFRLRQ SAS++  DL+ TRRAA+IAAAGSHV+ESYAV FPARAAATVA RAE LRACSRY+ A + A+QYMF+CVD QY A+ VPG VYSV A NARQ+ D + ARV A A  FR+N LS+ QK Q RY+ASL+A+++GRGC+YEE++YM +PKMAGAIRW TGAYAA V  V G M V++PSV ERI GVNRDSF+P YK+REAV RK   W+A   K Y  MS AAL++GI     + E    + W+PGW PK
Sbjct:    1 MHSAAFTTPVVLQSTANSSSFTPRKPLSARNATSTPLVKMAITPIADIFQNRSQTREAKQSAASKGVYTVQCTEGTAGANTAEYSRLSSLARSFRLRQSSASARYADLFATRRAAVIAAAGSHVEESYAVRFPARAAATVASRAEKLRACSRYIDAADEAEQYMFQCVDNQYNALKVPGGVYSVQACNARQSDDVDTARVCAGAAVFRSNQLSNSQKTQQRYNASLEAIYSGRGCTYEEDEYMNFPKMAGAIRWSTGAYAASVSSVQGAMNVRVPSVTERIQGVNRDSFWPSYKIREAVPRKDPVWKAPSVKNYAPMSAAALQYGIDAQTKQPELPSYDSWKPGWAPK 348          
BLAST of Ggra2294.t1 vs. uniprot
Match: A0A291FEC0 (LR gamma7 n=1 Tax=Griffithsia pacifica TaxID=35689 RepID=A0A291FEC0_GRIPA)

HSP 1 Score: 285 bits (728), Expect = 8.260e-91
Identity = 171/350 (48.86%), Postives = 217/350 (62.00%), Query Frame = 0
Query:    1 MESPAFAAPIAIGSTPFNGKSTICARRAMRTNRVSMLVSSP----ADSFMNKSQTREAKQAATSTGVYTPQCTEATGGCNTAEATRLASLARSFRLRQMSASSKMKDLYDTRRAAIIAAAGSHVDESYAVSFPARAAATVAGRAEMLRACSRYVVANEPAQQYMFECVDRQYKAVNVPGAVYSVGAYNARQAGDDEVARVAAAATSFRANTLSDKQKAQLRYDASLQAVFTGRG-CSYEEEQYMQYPKMAGAIRWGTGAYAADVVGVTGTMGVKMPSVAERIAGVNRDSFFPGYKMREAVERKPKFWEA-APTKYYGGMSGAALEWGIKDVKDKFEDGIAERWQPGWQPK 344
            M +PAF API++ +TP +  S    R A  ++     V +P    AD +M ++ TR AK AA   GVYTPQCTEA+GG NTAEATRLA LA  FRLRQ    ++  DLY+TRRAA+I A  S  +E YA SFP+RAAA+VAGRAE LRACSRY     P ++YM  CVDRQYK + V G VYS    + R AGD + AR+AA    FRA  LS  Q+ Q+RY+A  +A    RG C+YEE Q+  YPKMAG +R+GTG YAA V G    +G K  +VAE++ GVN +S++P  K+R AV R    W      K Y  MS AA+ +GI+     +     E W  GW+PK
Sbjct:    1 MTAPAFTAPISL-TTP-HAFSARGLRPATTSSAAPTAVPTPRMSAADKYMARTVTRTAKSAAAGFGVYTPQCTEASGGANTAEATRLAVLAADFRLRQAPLGARFADLYETRRAAVIQACNSSAEEGYATSFPSRAAASVAGRAEGLRACSRYFPQKPPVEEYMAACVDRQYKQMRVHGGVYSTLCADGRSAGDADTARIAALGARFRAQHLSKSQQTQMRYNAMSEARMLARGLCTYEEAQFNAYPKMAGMMRYGTGVYAASVRGPELVVGNKSMTVAEQVNGVNAESYWPSSKVRPAVARGTSPWMGLGVVKSYAAMSEAAMAYGIEQQSKPYVPQKYEGWSSGWKPK 348          
BLAST of Ggra2294.t1 vs. uniprot
Match: A0A1X6PF00 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PF00_PORUM)

HSP 1 Score: 116 bits (291), Expect = 3.600e-26
Identity = 84/220 (38.18%), Postives = 115/220 (52.27%), Query Frame = 0
Query:   37 LVSSPADSFMNKSQTREAKQAATSTGVYTPQCTEATGGCNTAEATRLASLARSFRLRQMSASSKMKDLYDTRRAAIIAAAGSHVDESYAVSFPARAAATVAGRAEMLRACSRYVVANEPAQQYMFECVDRQYKAVNVPGAVYSVGAYNARQAGDDEVARVAAAATSFRANTLSDKQKAQLRYDASLQAV-FTGRGCSYEEEQYMQYPKMAGAIRWGTGAY 255
            L  + AD +M +      KQ A   GVY P CTE +   + A+A+R+A+L+  FR    S ++K+ D ++TRR A   AAG   +ES    FPA AAATV G AE+ R C RY V    A+ +M   VD Q KA  V G VY+    +   AG+ E ARV A A +F          A  R+D++  A    G GC YEE  + ++  +A A+R  T  Y
Sbjct:  131 LAGARADVYMAERVRSAYKQQANPMGVYQPACTEGSAKGH-ADASRIAALSSRFRAGHRSTAAKLGDYFETRRRATTVAAGCTYEESLIGRFPAAAAATVLGAAEVGRTCIRYGVPRSAAESFMVRAVDAQMKARAVVGGVYAPSCSDGGAAGEAETARVTALAAAFXXXXAPAGVDAAARFDSAAYARNHFGHGCDYEEALFNKWGAVAAAMRPSTARY 349          
BLAST of Ggra2294.t1 vs. uniprot
Match: P92928 (Gamma 31 kDa subunit of phycoerythrin n=1 Tax=Aglaothamnion neglectum TaxID=2765 RepID=P92928_AGLNE)

HSP 1 Score: 69.3 bits (168), Expect = 9.450e-10
Identity = 67/260 (25.77%), Postives = 101/260 (38.85%), Query Frame = 0
Query:    9 PIAIGSTPF------------NGKSTICARRAMRTNRVSMLVSSPADSFMNKSQTREAK-------QAATSTGVYTPQCTEATGGCNTAEATRLASLARSFRLRQMSASSKMKDLYDTRRAAIIAAAGSHVDESYAVSFPARAAATVAGRAEMLRACSRYVVANEPAQQYMFECVDRQYKAVNVPGAVYSVGAYNARQAGDDEVARVAAAATSFRANTLSDKQKAQLRYDASLQAVFTGRGCSYEEEQYMQYPKMAGAIR 249
            P  IG+TPF            +   T+  R ++R    +  V     S M+K+ T  A+         A   G +  QCTE +     AE  R+ SL+  +R +  S S    D+Y+ R+AAI+AA G H +E Y V +    +     ++E    C +Y       +  M   +D        P  VY++        G  E  RVAA    +R    S  +    +Y           GC+YEE     Y  +  A R
Sbjct:   16 PATIGATPFATPLANRSAAVKSSAPTMVLRTSLRAPIETFSVYGTYSSIMSKADTYMAQCVKKQYLAMANPMGTFGVQCTEGSVKF-AAEVARVRSLSADYRQKMSSPSKAAFDMYENRKAAIVAAHGCHYEEGYFVDYKKVTSTYNTAKSEAAGTCFKYASPETVEEAAMVRYMDITQNNFANPSGVYNMSCNEGSVRGQAEDIRVAALNAQYRQAQKSTNKLMDEKYQQKKAGYAAAHGCTYEEGLISTYAAIGAAFR 274          
The following BLAST results are available for this feature:
BLAST of Ggra2294.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J3B03.440e-13260.34R-phycoerythrin gamma chain, chloroplastic n=1 Tax... [more]
A0A291FEC08.260e-9148.86LR gamma7 n=1 Tax=Griffithsia pacifica TaxID=35689... [more]
A0A1X6PF003.600e-2638.18Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
P929289.450e-1025.77Gamma 31 kDa subunit of phycoerythrin n=1 Tax=Agla... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000122_piloncontigtig00000122_pilon:47703..48755 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2294.t1Ggra2294.t1Gracilaria gracilis GNS1m malemRNAtig00000122_pilon 47703..48755 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2294.t1 ID=Ggra2294.t1|Name=Ggra2294.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=351bp
MESPAFAAPIAIGSTPFNGKSTICARRAMRTNRVSMLVSSPADSFMNKSQ
TREAKQAATSTGVYTPQCTEATGGCNTAEATRLASLARSFRLRQMSASSK
MKDLYDTRRAAIIAAAGSHVDESYAVSFPARAAATVAGRAEMLRACSRYV
VANEPAQQYMFECVDRQYKAVNVPGAVYSVGAYNARQAGDDEVARVAAAA
TSFRANTLSDKQKAQLRYDASLQAVFTGRGCSYEEEQYMQYPKMAGAIRW
GTGAYAADVVGVTGTMGVKMPSVAERIAGVNRDSFFPGYKMREAVERKPK
FWEAAPTKYYGGMSGAALEWGIKDVKDKFEDGIAERWQPGWQPKPVNAGY
*
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