Ggra2260.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2260.t1
Unique NameGgra2260.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length336
Homology
BLAST of Ggra2260.t1 vs. uniprot
Match: A0A2V3IYD2 (AT-rich interactive domain-containing protein cfi-1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYD2_9FLOR)

HSP 1 Score: 272 bits (695), Expect = 2.940e-85
Identity = 133/183 (72.68%), Postives = 153/183 (83.61%), Query Frame = 0
Query:   12 SPP----SRSDDRDGRVQLAPGDYSGNLPVDIVNMPVVPCPLIKLGNRVIICGRYPDHHTCVKAANNLGAVMLSDTFADHLPPHTTCTEDRFLADWRAFHFEIYGLVPKLPTVSGSQLDLFLFAQQILLLGGIDTVIEKRGFVVLAKQLRLSKPCTSAATVLRRAHQSLMHEYEKKLMQISAA 190
            SPP    SR    D  V+LAPGDYSG LPVDI+ MPVVPCPLIKLGNRVIICGRY D+  CVKAAN+LG +MLS T+ +  PP      D F+ADW+AFH+E+YGLVP+LPTVSGS+LDLFLFA+Q+LLLGGIDTVIEKRGFVVLAKQL LSKPCTSAA VLRRAHQSLMH+YE++L+Q+S A
Sbjct:   36 SPPPTTVSRRFPADDHVELAPGDYSGKLPVDIMTMPVVPCPLIKLGNRVIICGRYSDNEPCVKAANSLGVLMLSSTYTNCKPPAAITRRDSFIADWKAFHYEMYGLVPRLPTVSGSKLDLFLFAEQVLLLGGIDTVIEKRGFVVLAKQLCLSKPCTSAAVVLRRAHQSLMHQYEQRLIQLSTA 218          
BLAST of Ggra2260.t1 vs. uniprot
Match: A0A2V3J2X0 (AT-rich interactive domain-containing protein 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2X0_9FLOR)

HSP 1 Score: 131 bits (330), Expect = 3.270e-30
Identity = 71/161 (44.10%), Postives = 98/161 (60.87%), Query Frame = 0
Query:   37 VDIVNMPVVPCPLIKLGNRVIICGRYPDHHTCVKAANNLGAVMLSDTFADHLPPHTTCTED-----RFLADWRAFHFEIYGLVPKLPTVSGSQLDLFLFAQQILLLGGIDTVIEKRGFVVLAKQLRLSKPCTSAATVLRRAHQSLMHEYEKKLMQISAAQE 192
            VDI+++ VV  PL K G   IICGR PD++    AA  LG  M+S   +       TC  +      FL DW+AFH E+ G VPK P + G +LD+F  A ++LLLGG+  V++KR F V+A+QL L K CTSAA+VL+ A++ L+  YE KL+     Q+
Sbjct:  229 VDILSLDVVDSPLQKDGRHTIICGRLPDNNPYAIAARGLGQKMVSKKHSGF----QTCEVESERRLNFLKDWKAFHEELLGYVPKRPVIGGGELDIFSLAHEVLLLGGVLNVVKKRAFRVVAQQLELPKSCTSAASVLKNAYERLLFYYEGKLVHDRMPQD 385          
BLAST of Ggra2260.t1 vs. uniprot
Match: A0A1X6PJV0 (ARID domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PJV0_PORUM)

HSP 1 Score: 86.3 bits (212), Expect = 8.490e-15
Identity = 55/152 (36.18%), Postives = 79/152 (51.97%), Query Frame = 0
Query:   48 PLIKLGNRVIICGRYPDHHTCVKAANNLGAVMLSDTFAD---HLPPHTTCT-----------EDRFLADWRAFHFEIYGLVPKLPTVSGSQLDLFLFAQQILLLGGIDTVIEKRGFVVLAKQLRLSKPCTSAATVLRRAHQSLMHEYEKKLM 185
            PL K G  ++I GR P      +A +++G   +S   +      PP                E  FLAD  AF FE      K+P V G  L++F    ++  LGG++ V+ KR F V+A +L L + CTSAA VLR AH+SL++ YE+KL+
Sbjct:  532 PLRKEGRNLVITGRLPTSSPYQQALDSVGIRFVSAKLSGIGPGAPPXXXXXXXXXXXGVGGREAAFLADHAAFMFERGQASFKVPVVGGGPLNIFRLFVEVCKLGGVENVLNKRAFRVVAGELDLPRTCTSAAFVLRNAHESLLYAYEQKLV 683          
The following BLAST results are available for this feature:
BLAST of Ggra2260.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IYD22.940e-8572.68AT-rich interactive domain-containing protein cfi-... [more]
A0A2V3J2X03.270e-3044.10AT-rich interactive domain-containing protein 2 n=... [more]
A0A1X6PJV08.490e-1536.18ARID domain-containing protein n=1 Tax=Porphyra um... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001606ARID DNA-binding domainSMARTSM00501bright_3coord: 94..186
e-value: 6.5E-5
score: 31.7
IPR001606ARID DNA-binding domainPFAMPF01388ARIDcoord: 96..181
e-value: 8.5E-8
score: 32.8
IPR001606ARID DNA-binding domainPROSITEPS51011ARIDcoord: 93..185
score: 14.825344
NoneNo IPR availableSMARTSM01014ARID_2coord: 90..181
e-value: 5.9E-10
score: 49.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 226..240
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 191..245
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 191..217
NoneNo IPR availableCDDcd16100ARIDcoord: 95..181
e-value: 3.59367E-15
score: 68.1532
IPR036431ARID DNA-binding domain superfamilyGENE3D1.10.150.60coord: 83..201
e-value: 6.3E-15
score: 56.7
IPR036431ARID DNA-binding domain superfamilySUPERFAMILY46774ARID-likecoord: 90..190

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:944859..945866 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2260.t1Ggra2260.t1Gracilaria gracilis GNS1m malemRNAtig00000900_pilon 944859..945866 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2260.t1 ID=Ggra2260.t1|Name=Ggra2260.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=336bp
MAAAHHFDASESPPSRSDDRDGRVQLAPGDYSGNLPVDIVNMPVVPCPLI
KLGNRVIICGRYPDHHTCVKAANNLGAVMLSDTFADHLPPHTTCTEDRFL
ADWRAFHFEIYGLVPKLPTVSGSQLDLFLFAQQILLLGGIDTVIEKRGFV
VLAKQLRLSKPCTSAATVLRRAHQSLMHEYEKKLMQISAAQESNASATPS
AAPNHHGAQQTMASYPPYQPRIHSREAELGSPRKKMRRLSEPYPYTTSLQ
SAHSLHYDARLGARLSTIEPTLPTHFSRDDAPLPRLPPVTSLTSGMANLA
ASNRSGAVSSRATQDAKYVQYGGSKYATPHLDELR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001606ARID_dom
IPR036431ARID_dom_sf