Ggra2260.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2260.t1
Unique NameGgra2260.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length336
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:944859..945866 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706752.1
PFAMsARID,RBB1NT,Tudor-knot
Max annot lvl2759|Eukaryota
KEGG koko:K07874,ko:K11763
KEGG Pathwayko05134,map05134
Evalue3.2e-10
EggNOG OGsKOG2744@1|root,KOG2744@2759|Eukaryota
DescriptionDNA binding
COG categoryK
BRITEko00000,ko00001,ko03021,ko03036,ko04031,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2260Ggra2260Gracilaria gracilis GNS1m malegenetig00000900_pilon 944859..945866 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2260.t1.stop1Ggra2260.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 944859..944861 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2260.t1.CDS1Ggra2260.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 944859..945866 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2260.t1.exon1Ggra2260.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 944859..945866 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2260.t1.start1Ggra2260.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 945864..945866 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2260.t1Ggra2260.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 944859..945866 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2260.t1 ID=Ggra2260.t1|Name=Ggra2260.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=336bp
MAAAHHFDASESPPSRSDDRDGRVQLAPGDYSGNLPVDIVNMPVVPCPLI
KLGNRVIICGRYPDHHTCVKAANNLGAVMLSDTFADHLPPHTTCTEDRFL
ADWRAFHFEIYGLVPKLPTVSGSQLDLFLFAQQILLLGGIDTVIEKRGFV
VLAKQLRLSKPCTSAATVLRRAHQSLMHEYEKKLMQISAAQESNASATPS
AAPNHHGAQQTMASYPPYQPRIHSREAELGSPRKKMRRLSEPYPYTTSLQ
SAHSLHYDARLGARLSTIEPTLPTHFSRDDAPLPRLPPVTSLTSGMANLA
ASNRSGAVSSRATQDAKYVQYGGSKYATPHLDELR*
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spliced messenger RNA

>Ggra2260.t1 ID=Ggra2260.t1|Name=Ggra2260.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1008bp|location=Sequence derived from alignment at tig00000900_pilon:944859..945866- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCTGCGCATCACTTCGACGCCTCCGAGTCGCCGCCGTCGCGCAG
CGACGACCGCGACGGCCGCGTGCAGCTGGCGCCCGGCGATTATTCCGGTA
ACCTGCCGGTGGATATTGTCAACATGCCCGTCGTTCCGTGCCCGCTCATC
AAGCTTGGAAACCGCGTCATCATCTGTGGAAGGTACCCAGACCACCACAC
TTGCGTCAAGGCCGCTAACAATCTGGGCGCCGTCATGCTGTCAGACACGT
TCGCCGACCACCTTCCGCCGCACACCACCTGTACAGAGGACCGCTTCCTT
GCCGATTGGCGCGCGTTCCACTTCGAGATTTACGGACTTGTGCCCAAGTT
GCCCACCGTGTCCGGCTCACAACTGGACCTTTTTCTGTTCGCGCAGCAGA
TTTTGCTCTTGGGTGGCATCGACACCGTCATTGAGAAGCGCGGCTTCGTG
GTACTTGCCAAGCAACTGCGACTGTCGAAGCCATGTACCAGCGCAGCCAC
CGTGCTCCGTCGCGCACACCAGTCGCTCATGCATGAGTACGAGAAGAAGC
TGATGCAAATTTCCGCCGCACAGGAAAGCAATGCGTCTGCTACGCCATCG
GCTGCTCCAAATCACCACGGTGCGCAGCAGACTATGGCGTCGTATCCCCC
GTATCAACCGCGGATACACTCACGTGAGGCGGAACTGGGCAGCCCGCGAA
AGAAGATGAGAAGGTTGAGTGAGCCGTATCCATACACCACCTCGCTACAA
AGTGCACACAGTTTGCACTACGACGCACGACTTGGCGCACGACTATCGAC
CATAGAACCAACACTACCGACGCATTTTTCGCGTGATGACGCGCCACTAC
CACGACTACCTCCGGTAACTTCGCTTACGTCGGGCATGGCCAACTTGGCG
GCGTCGAACCGCAGCGGCGCGGTAAGCTCCAGAGCAACGCAAGATGCAAA
GTACGTACAATATGGCGGATCGAAATATGCCACACCGCATCTGGACGAAC
TGAGATGA
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protein sequence of Ggra2260.t1

>Ggra2260.t1 ID=Ggra2260.t1|Name=Ggra2260.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=336bp
MAAAHHFDASESPPSRSDDRDGRVQLAPGDYSGNLPVDIVNMPVVPCPLI
KLGNRVIICGRYPDHHTCVKAANNLGAVMLSDTFADHLPPHTTCTEDRFL
ADWRAFHFEIYGLVPKLPTVSGSQLDLFLFAQQILLLGGIDTVIEKRGFV
VLAKQLRLSKPCTSAATVLRRAHQSLMHEYEKKLMQISAAQESNASATPS
AAPNHHGAQQTMASYPPYQPRIHSREAELGSPRKKMRRLSEPYPYTTSLQ
SAHSLHYDARLGARLSTIEPTLPTHFSRDDAPLPRLPPVTSLTSGMANLA
ASNRSGAVSSRATQDAKYVQYGGSKYATPHLDELR*
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mRNA from alignment at tig00000900_pilon:944859..945866-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2260.t1 ID=Ggra2260.t1|Name=Ggra2260.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1008bp|location=Sequence derived from alignment at tig00000900_pilon:944859..945866- (Gracilaria gracilis GNS1m male)
ATGGCCGCTGCGCATCACTTCGACGCCTCCGAGTCGCCGCCGTCGCGCAG
CGACGACCGCGACGGCCGCGTGCAGCTGGCGCCCGGCGATTATTCCGGTA
ACCTGCCGGTGGATATTGTCAACATGCCCGTCGTTCCGTGCCCGCTCATC
AAGCTTGGAAACCGCGTCATCATCTGTGGAAGGTACCCAGACCACCACAC
TTGCGTCAAGGCCGCTAACAATCTGGGCGCCGTCATGCTGTCAGACACGT
TCGCCGACCACCTTCCGCCGCACACCACCTGTACAGAGGACCGCTTCCTT
GCCGATTGGCGCGCGTTCCACTTCGAGATTTACGGACTTGTGCCCAAGTT
GCCCACCGTGTCCGGCTCACAACTGGACCTTTTTCTGTTCGCGCAGCAGA
TTTTGCTCTTGGGTGGCATCGACACCGTCATTGAGAAGCGCGGCTTCGTG
GTACTTGCCAAGCAACTGCGACTGTCGAAGCCATGTACCAGCGCAGCCAC
CGTGCTCCGTCGCGCACACCAGTCGCTCATGCATGAGTACGAGAAGAAGC
TGATGCAAATTTCCGCCGCACAGGAAAGCAATGCGTCTGCTACGCCATCG
GCTGCTCCAAATCACCACGGTGCGCAGCAGACTATGGCGTCGTATCCCCC
GTATCAACCGCGGATACACTCACGTGAGGCGGAACTGGGCAGCCCGCGAA
AGAAGATGAGAAGGTTGAGTGAGCCGTATCCATACACCACCTCGCTACAA
AGTGCACACAGTTTGCACTACGACGCACGACTTGGCGCACGACTATCGAC
CATAGAACCAACACTACCGACGCATTTTTCGCGTGATGACGCGCCACTAC
CACGACTACCTCCGGTAACTTCGCTTACGTCGGGCATGGCCAACTTGGCG
GCGTCGAACCGCAGCGGCGCGGTAAGCTCCAGAGCAACGCAAGATGCAAA
GTACGTACAATATGGCGGATCGAAATATGCCACACCGCATCTGGACGAAC
TGAGATGA
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Coding sequence (CDS) from alignment at tig00000900_pilon:944859..945866-

>Ggra2260.t1 ID=Ggra2260.t1|Name=Ggra2260.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1008bp|location=Sequence derived from alignment at tig00000900_pilon:944859..945866- (Gracilaria gracilis GNS1m male)
ATGGCCGCTGCGCATCACTTCGACGCCTCCGAGTCGCCGCCGTCGCGCAG
CGACGACCGCGACGGCCGCGTGCAGCTGGCGCCCGGCGATTATTCCGGTA
ACCTGCCGGTGGATATTGTCAACATGCCCGTCGTTCCGTGCCCGCTCATC
AAGCTTGGAAACCGCGTCATCATCTGTGGAAGGTACCCAGACCACCACAC
TTGCGTCAAGGCCGCTAACAATCTGGGCGCCGTCATGCTGTCAGACACGT
TCGCCGACCACCTTCCGCCGCACACCACCTGTACAGAGGACCGCTTCCTT
GCCGATTGGCGCGCGTTCCACTTCGAGATTTACGGACTTGTGCCCAAGTT
GCCCACCGTGTCCGGCTCACAACTGGACCTTTTTCTGTTCGCGCAGCAGA
TTTTGCTCTTGGGTGGCATCGACACCGTCATTGAGAAGCGCGGCTTCGTG
GTACTTGCCAAGCAACTGCGACTGTCGAAGCCATGTACCAGCGCAGCCAC
CGTGCTCCGTCGCGCACACCAGTCGCTCATGCATGAGTACGAGAAGAAGC
TGATGCAAATTTCCGCCGCACAGGAAAGCAATGCGTCTGCTACGCCATCG
GCTGCTCCAAATCACCACGGTGCGCAGCAGACTATGGCGTCGTATCCCCC
GTATCAACCGCGGATACACTCACGTGAGGCGGAACTGGGCAGCCCGCGAA
AGAAGATGAGAAGGTTGAGTGAGCCGTATCCATACACCACCTCGCTACAA
AGTGCACACAGTTTGCACTACGACGCACGACTTGGCGCACGACTATCGAC
CATAGAACCAACACTACCGACGCATTTTTCGCGTGATGACGCGCCACTAC
CACGACTACCTCCGGTAACTTCGCTTACGTCGGGCATGGCCAACTTGGCG
GCGTCGAACCGCAGCGGCGCGGTAAGCTCCAGAGCAACGCAAGATGCAAA
GTACGTACAATATGGCGGATCGAAATATGCCACACCGCATCTGGACGAAC
TGAGATGA
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