Ggra2227.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2227.t1
Unique NameGgra2227.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length782
Homology
BLAST of Ggra2227.t1 vs. uniprot
Match: A0A2V3IMR3 (BTB domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMR3_9FLOR)

HSP 1 Score: 451 bits (1160), Expect = 3.480e-144
Identity = 297/780 (38.08%), Postives = 415/780 (53.21%), Query Frame = 0
Query:    1 MAKPRPIPLHTWQLHEFTLTPTACRLQAFENRRRPQPDPIVTLRFSQPG------EDPQPARELHVPASALKCSSPPFQALVTAGFLESTTLVVHLEPDAYSAFKIIVPFLKCEDIDMRAMPESLPMYADRWGLDDLFDACFALTEIKRWGTCDQFMLFALPLLRYLKVPQTFKHIFAVRLGYGLNEVIDWITGEEDYRIQRLRSIPAGRADSESSDYSPVPN-CSILVDGEP----CSRPP-RKELSDRYFCDEHYQSEYLNGSPRYGARV-------ANFNPPEPPACSPTRKKK--RVYYSTADAHLQSSCSEKGSKLPAAIAPSTGVSASGKNTEQNCQLQVNSVSNEGKKPEASIDIFPDSHASSSPLPKANSPVAATCELSPKGAPSIHPSDKRAEDAVSFSPVSSVDEK----------GASSKPTGSTSPV---SPAKKYLKEKRKGRKRNEEYETEDREYALWDAIRMQNMLPQALKELIWHSADGYAGFVLKGILRVLDEELTEDEKIKLLKVLPWERKDFSSTLGSNSDFT--WRMSDWRIVAKAQALAAQTHAGGGEEYSKIMHWPFFVENVCDESGVYPAKCEQYGFIDYRDDSSIYVSWRTRKKYDGEYSPLLLNMSNCLSDDLDEDFLERPLDVSVSVRELDCGCEAGSESKKPIIPRMFYGLLREDLKVRTLHTGPGVTFTIMDDFEMSRWMCRHQPTCGLVLGLRIRIC-DKVQTNADKQSEECSEERLGRGKCPCGSCLE----DDMSSGDEIYA-AQVDSD 738
            MAK +PI L TWQL   TLTPTAC LQ +ENRRRP PDP+VTLRF+ P       E PQ   EL + AS L+ SS P +ALV++GFLESTT VVHL+  ++  FK+IV FL+CEDIDM  +P+ L ++ADRWGLD LF+AC A  EI+ W + D+FMLF+LPL+R+L VP TFK +FA RL   L++V DWI+G+E  R QR R  P        + Y+     C+ +V   P    C RP      S +++C EH  +     SP+   R        A  NPP+  +  PT+ +   R  ++T      +SC       PA +A                           K   +S+ +   S A                        +  PS+ ++E   +  PV+ V +             +S    ST P    S A+ +      G+KR    E+ ++E ALWDA++ Q+ML +ALKEL W++  G   F+L G+LRV++++L+E E++ LL++LPW+R+DF   L  NSDFT  W   +WRIVA+AQA +A+  AGGG+EYS + +W  F + VC  SG    K  +   +   D   I+++   R+K    + PL L MS  L D   ED    PL VS+ +R +DC CEA S SK  +     YG   +++KV+ L   P   F I+ +  +++W+  HQP+CGL L + +RIC D+V   AD         R  RG CPCGSC E    DD   G++IY  A  DSD
Sbjct:    1 MAKRKPIALRTWQLDGSTLTPTACHLQCYENRRRPNPDPLVTLRFAAPAHASSARESPQ---ELFIHASVLRDSSSPLRALVSSGFLESTTHVVHLDHQSFQPFKVIVSFLQCEDIDMTTVPDHLAVFADRWGLDVLFEACLAYAEIRSWSSVDEFMLFSLPLMRFLHVPYTFKCVFASRLALCLSDVQDWISGDEGIRNQRRRLAPTLNNRHSRAQYTSHETICNTIVGTSPNDILCGRPAVLSHGSAKFYCIEHLVTVVSEDSPKPAERPPSSPSSSAQVNPPDNQSPVPTQAENTDRAPHATKSF---ASCE------PAVVAK--------------------------KASTSSVSVARSSQA------------XXXXXXXXXXXXTSKPSESKSEKRPTEQPVTEVQDAIQKQRLKSLPAFTSNTDRSTRPQQLDSEARSFEMVSIAGKKRGRNSESAEKEQALWDAMKSQHMLYKALKELAWYAMPGCVPFILDGVLRVMEDKLSESEQVALLRILPWDRRDFEQVL--NSDFTSKWSTREWRIVARAQAQSARI-AGGGDEYSAVFYWWGFADEVCQSSGAPFGKLRRETTM-LADGLYIHLALHAREKRKLGHHPLFLTMS-VLDDTSSEDLRNMPLLVSIHLRAMDCSCEAASCSKSALDYNQSYGFRHKNVKVKFLLGTP--VFEILSEHGVAQWVKLHQPSCGLALRVVLRICKDQVDPEADMNDAHDVRLRRARGICPCGSCYEEGLSDDSGQGEDIYIIASDDSD 723          
BLAST of Ggra2227.t1 vs. uniprot
Match: A0A2V3II75 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II75_9FLOR)

HSP 1 Score: 90.1 bits (222), Expect = 4.770e-15
Identity = 75/248 (30.24%), Postives = 117/248 (47.18%), Query Frame = 0
Query:    1 MAKPRP-IPLHTWQLHEFTLTPTACRLQAFENRRRPQP--DPIVTLRFSQPGEDPQPARE-----LHVPASALKCSSPPFQALVTAGFLESTTLVVHLE-PDAYSAFKIIVPFLKCEDIDMRAMPESLPMYADRWGLDDLFDACFALTEIKRWGTCDQFMLFA-LPLLRYLKVPQTFKHIFAVRLGYGLNEVIDWITGEEDYRIQRLRSIPAGRADSESS---DYSPVPNCSILVDGEPCSRPPRKEL 235
            +  P+P  PL  W+L   +L+PT C LQA   R + Q   DP++T+   QP   P          L +  S L+ +SP   AL+ A   ++ + V  L+ PD +S  +    FL  + +D+   P  LP+ A RWGL+ LF+ACFA  E +   T  + +L+  +P+L  ++VP TFK  FA          + ++   +++ +QR     AG     S    DY     C   V   P + P   +L
Sbjct:    5 VTAPQPRTPLGPWELRGASLSPTRCHLQAHARRLQSQSSTDPLITI-IVQPPYTPXXXXXXXXXALTIHRSLLRAASPVLSALIPA---DARSPVRVLDWPDTFSLLR---KFLYLQPLDLAVAPPDLPLAAARWGLNQLFEACFAYAE-RNLPTDMRALLWRWMPVLNAVRVPPTFKTTFA----------LSFVAALDEHPLQRTWLSSAGARGDYSQLPDDYGLFAPCQCSVTEPPANSPAHDKL 234          
The following BLAST results are available for this feature:
BLAST of Ggra2227.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IMR33.480e-14438.08BTB domain-containing protein n=1 Tax=Gracilariops... [more]
A0A2V3II754.770e-1530.24Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 411..431
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 727..781
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 310..333
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 739..768
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 391..409
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 310..427
IPR011333SKP1/BTB/POZ domain superfamilyGENE3D3.30.710.10Potassium Channel Kv1.1; Chain Acoord: 36..141
e-value: 4.0E-6
score: 28.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:778207..780552 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2227.t1Ggra2227.t1Gracilaria gracilis GNS1m malemRNAtig00000900_pilon 778207..780552 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2227.t1 ID=Ggra2227.t1|Name=Ggra2227.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=782bp
MAKPRPIPLHTWQLHEFTLTPTACRLQAFENRRRPQPDPIVTLRFSQPGE
DPQPARELHVPASALKCSSPPFQALVTAGFLESTTLVVHLEPDAYSAFKI
IVPFLKCEDIDMRAMPESLPMYADRWGLDDLFDACFALTEIKRWGTCDQF
MLFALPLLRYLKVPQTFKHIFAVRLGYGLNEVIDWITGEEDYRIQRLRSI
PAGRADSESSDYSPVPNCSILVDGEPCSRPPRKELSDRYFCDEHYQSEYL
NGSPRYGARVANFNPPEPPACSPTRKKKRVYYSTADAHLQSSCSEKGSKL
PAAIAPSTGVSASGKNTEQNCQLQVNSVSNEGKKPEASIDIFPDSHASSS
PLPKANSPVAATCELSPKGAPSIHPSDKRAEDAVSFSPVSSVDEKGASSK
PTGSTSPVSPAKKYLKEKRKGRKRNEEYETEDREYALWDAIRMQNMLPQA
LKELIWHSADGYAGFVLKGILRVLDEELTEDEKIKLLKVLPWERKDFSST
LGSNSDFTWRMSDWRIVAKAQALAAQTHAGGGEEYSKIMHWPFFVENVCD
ESGVYPAKCEQYGFIDYRDDSSIYVSWRTRKKYDGEYSPLLLNMSNCLSD
DLDEDFLERPLDVSVSVRELDCGCEAGSESKKPIIPRMFYGLLREDLKVR
TLHTGPGVTFTIMDDFEMSRWMCRHQPTCGLVLGLRIRICDKVQTNADKQ
SEECSEERLGRGKCPCGSCLEDDMSSGDEIYAAQVDSDTSQDEDIESDEY
GDDDDDIDDEDDDNGVNIEEDVVYIHPGMDL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011333SKP1/BTB/POZ_sf