Ggra2227.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2227.t1
Unique Name	Ggra2227.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	782

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000900_pilon	contig	tig00000900_pilon:778207..780552 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2227	Ggra2227	Gracilaria gracilis GNS1m male	gene	tig00000900_pilon 778207..780552 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2227.t1.stop1	Ggra2227.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000900_pilon 778207..778209 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2227.t1.CDS1	Ggra2227.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000900_pilon 778207..780552 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2227.t1.exon1	Ggra2227.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000900_pilon 778207..780552 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2227.t1.start1	Ggra2227.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000900_pilon 780550..780552 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2227.t1	Ggra2227.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000900_pilon 778207..780552 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000900_pilon:778207..780552-
coding sequence from alignment at tig00000900_pilon:778207..780552-

mRNA sequence

>Ggra2227.t1 ID=Ggra2227.t1|Name=Ggra2227.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=782bp
MAKPRPIPLHTWQLHEFTLTPTACRLQAFENRRRPQPDPIVTLRFSQPGE
DPQPARELHVPASALKCSSPPFQALVTAGFLESTTLVVHLEPDAYSAFKI
IVPFLKCEDIDMRAMPESLPMYADRWGLDDLFDACFALTEIKRWGTCDQF
MLFALPLLRYLKVPQTFKHIFAVRLGYGLNEVIDWITGEEDYRIQRLRSI
PAGRADSESSDYSPVPNCSILVDGEPCSRPPRKELSDRYFCDEHYQSEYL
NGSPRYGARVANFNPPEPPACSPTRKKKRVYYSTADAHLQSSCSEKGSKL
PAAIAPSTGVSASGKNTEQNCQLQVNSVSNEGKKPEASIDIFPDSHASSS
PLPKANSPVAATCELSPKGAPSIHPSDKRAEDAVSFSPVSSVDEKGASSK
PTGSTSPVSPAKKYLKEKRKGRKRNEEYETEDREYALWDAIRMQNMLPQA
LKELIWHSADGYAGFVLKGILRVLDEELTEDEKIKLLKVLPWERKDFSST
LGSNSDFTWRMSDWRIVAKAQALAAQTHAGGGEEYSKIMHWPFFVENVCD
ESGVYPAKCEQYGFIDYRDDSSIYVSWRTRKKYDGEYSPLLLNMSNCLSD
DLDEDFLERPLDVSVSVRELDCGCEAGSESKKPIIPRMFYGLLREDLKVR
TLHTGPGVTFTIMDDFEMSRWMCRHQPTCGLVLGLRIRICDKVQTNADKQ
SEECSEERLGRGKCPCGSCLEDDMSSGDEIYAAQVDSDTSQDEDIESDEY
GDDDDDIDDEDDDNGVNIEEDVVYIHPGMDL*

spliced messenger RNA

>Ggra2227.t1 ID=Ggra2227.t1|Name=Ggra2227.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2346bp|location=Sequence derived from alignment at tig00000900_pilon:778207..780552- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAAACCCAGACCTATACCCTTACACACTTGGCAGCTACACGAGTT
CACGCTCACCCCGACAGCATGCCGTCTACAGGCGTTTGAGAACAGAAGGC
GCCCTCAACCTGACCCCATCGTCACCCTGCGTTTCTCACAGCCGGGAGAA
GACCCGCAACCTGCTCGCGAACTACATGTTCCTGCTTCTGCCCTCAAGTG
CTCCAGTCCCCCCTTTCAGGCACTAGTGACTGCTGGCTTCCTTGAGTCCA
CCACCCTCGTTGTTCACCTAGAGCCAGACGCTTACTCAGCCTTCAAGATC
ATCGTACCCTTTCTCAAATGTGAAGACATCGACATGAGAGCTATGCCAGA
AAGCTTGCCGATGTATGCGGATCGATGGGGGCTTGATGATCTCTTCGATG
CATGTTTTGCACTCACAGAAATTAAACGTTGGGGAACTTGCGACCAATTC
ATGCTGTTTGCTCTTCCCTTGTTACGATACTTGAAAGTTCCTCAAACTTT
TAAGCACATATTTGCAGTGCGTCTTGGCTACGGGCTCAACGAGGTCATAG
ACTGGATAACAGGTGAAGAAGATTATCGCATCCAGCGTCTTCGCTCAATT
CCTGCTGGACGAGCCGATTCAGAATCTAGCGATTACTCACCCGTCCCTAA
CTGCTCAATTCTCGTGGATGGAGAGCCTTGCTCTCGTCCACCGAGGAAAG
AACTCTCCGACAGGTATTTCTGCGATGAACACTATCAGAGCGAGTATCTG
AACGGCTCCCCACGGTACGGAGCTCGTGTGGCAAATTTCAATCCACCCGA
ACCACCAGCCTGTTCACCAACCCGCAAGAAGAAGAGGGTGTACTATTCTA
CCGCAGATGCTCATCTGCAAAGCAGCTGTTCTGAAAAAGGCTCGAAGCTT
CCAGCTGCGATTGCTCCTTCAACCGGGGTTTCTGCTTCTGGAAAGAATAC
TGAGCAAAACTGTCAGCTGCAGGTCAACTCCGTATCAAACGAAGGCAAAA
AGCCGGAAGCTTCAATTGATATCTTCCCTGACTCCCATGCGTCCTCCTCT
CCGTTGCCGAAGGCGAATAGCCCAGTTGCAGCCACATGTGAGCTGTCTCC
AAAGGGGGCTCCATCTATTCACCCTTCTGACAAGAGAGCTGAAGATGCTG
TTTCCTTTTCGCCAGTGAGCTCTGTCGATGAGAAGGGGGCATCTTCAAAG
CCAACGGGCTCAACGAGTCCAGTGAGCCCAGCGAAGAAGTATCTGAAGGA
AAAGAGAAAAGGAAGGAAACGAAACGAGGAATACGAAACTGAAGACAGAG
AATACGCGTTGTGGGACGCCATAAGAATGCAGAACATGCTGCCTCAAGCA
TTAAAGGAGCTGATTTGGCACTCGGCCGATGGATATGCAGGCTTTGTTCT
CAAGGGAATATTACGAGTTCTGGACGAAGAACTAACAGAAGATGAGAAAA
TCAAGCTTCTGAAAGTTCTACCATGGGAACGCAAAGACTTTTCTTCAACA
CTTGGTTCGAACTCAGATTTCACATGGCGCATGTCTGATTGGCGGATTGT
GGCAAAGGCTCAAGCACTCGCAGCCCAGACTCATGCTGGTGGTGGTGAGG
AATACTCTAAGATAATGCATTGGCCTTTCTTTGTTGAGAATGTGTGTGAT
GAATCAGGAGTTTATCCTGCGAAGTGCGAGCAGTACGGCTTCATAGATTA
CCGTGATGACTCGTCAATCTATGTCTCCTGGAGAACGAGGAAAAAATATG
ATGGCGAATACTCACCTCTCCTCCTCAACATGTCAAATTGTCTGTCGGAT
GACTTGGATGAAGACTTTCTAGAGCGGCCATTAGATGTTTCAGTTAGTGT
AAGAGAGTTGGATTGTGGCTGTGAAGCGGGCTCGGAATCGAAGAAGCCAA
TAATTCCGAGGATGTTTTATGGCCTCCTGCGGGAAGATCTGAAGGTAAGA
ACTCTGCATACCGGTCCAGGCGTAACATTTACCATTATGGATGATTTCGA
AATGTCCCGCTGGATGTGCCGTCATCAACCGACTTGTGGACTCGTTTTAG
GGCTCAGAATTCGTATCTGCGATAAAGTCCAAACGAATGCAGATAAGCAA
TCAGAAGAGTGTTCTGAAGAACGTCTTGGTCGCGGGAAATGCCCTTGTGG
TTCATGTCTTGAAGATGACATGTCTAGTGGTGATGAAATATATGCGGCCC
AAGTGGACAGCGACACGTCTCAAGACGAGGATATTGAGAGTGATGAATAC
GGTGATGATGATGATGATATTGATGATGAGGATGATGATAACGGCGTAAA
CATTGAGGAGGACGTGGTTTACATCCACCCCGGGATGGATTTGTAG

protein sequence of Ggra2227.t1

>Ggra2227.t1 ID=Ggra2227.t1|Name=Ggra2227.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=782bp
MAKPRPIPLHTWQLHEFTLTPTACRLQAFENRRRPQPDPIVTLRFSQPGE
DPQPARELHVPASALKCSSPPFQALVTAGFLESTTLVVHLEPDAYSAFKI
IVPFLKCEDIDMRAMPESLPMYADRWGLDDLFDACFALTEIKRWGTCDQF
MLFALPLLRYLKVPQTFKHIFAVRLGYGLNEVIDWITGEEDYRIQRLRSI
PAGRADSESSDYSPVPNCSILVDGEPCSRPPRKELSDRYFCDEHYQSEYL
NGSPRYGARVANFNPPEPPACSPTRKKKRVYYSTADAHLQSSCSEKGSKL
PAAIAPSTGVSASGKNTEQNCQLQVNSVSNEGKKPEASIDIFPDSHASSS
PLPKANSPVAATCELSPKGAPSIHPSDKRAEDAVSFSPVSSVDEKGASSK
PTGSTSPVSPAKKYLKEKRKGRKRNEEYETEDREYALWDAIRMQNMLPQA
LKELIWHSADGYAGFVLKGILRVLDEELTEDEKIKLLKVLPWERKDFSST
LGSNSDFTWRMSDWRIVAKAQALAAQTHAGGGEEYSKIMHWPFFVENVCD
ESGVYPAKCEQYGFIDYRDDSSIYVSWRTRKKYDGEYSPLLLNMSNCLSD
DLDEDFLERPLDVSVSVRELDCGCEAGSESKKPIIPRMFYGLLREDLKVR
TLHTGPGVTFTIMDDFEMSRWMCRHQPTCGLVLGLRIRICDKVQTNADKQ
SEECSEERLGRGKCPCGSCLEDDMSSGDEIYAAQVDSDTSQDEDIESDEY
GDDDDDIDDEDDDNGVNIEEDVVYIHPGMDL*

mRNA from alignment at tig00000900_pilon:778207..780552-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2227.t1 ID=Ggra2227.t1|Name=Ggra2227.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2346bp|location=Sequence derived from alignment at tig00000900_pilon:778207..780552- (Gracilaria gracilis GNS1m male)
ATGGCCAAACCCAGACCTATACCCTTACACACTTGGCAGCTACACGAGTT
CACGCTCACCCCGACAGCATGCCGTCTACAGGCGTTTGAGAACAGAAGGC
GCCCTCAACCTGACCCCATCGTCACCCTGCGTTTCTCACAGCCGGGAGAA
GACCCGCAACCTGCTCGCGAACTACATGTTCCTGCTTCTGCCCTCAAGTG
CTCCAGTCCCCCCTTTCAGGCACTAGTGACTGCTGGCTTCCTTGAGTCCA
CCACCCTCGTTGTTCACCTAGAGCCAGACGCTTACTCAGCCTTCAAGATC
ATCGTACCCTTTCTCAAATGTGAAGACATCGACATGAGAGCTATGCCAGA
AAGCTTGCCGATGTATGCGGATCGATGGGGGCTTGATGATCTCTTCGATG
CATGTTTTGCACTCACAGAAATTAAACGTTGGGGAACTTGCGACCAATTC
ATGCTGTTTGCTCTTCCCTTGTTACGATACTTGAAAGTTCCTCAAACTTT
TAAGCACATATTTGCAGTGCGTCTTGGCTACGGGCTCAACGAGGTCATAG
ACTGGATAACAGGTGAAGAAGATTATCGCATCCAGCGTCTTCGCTCAATT
CCTGCTGGACGAGCCGATTCAGAATCTAGCGATTACTCACCCGTCCCTAA
CTGCTCAATTCTCGTGGATGGAGAGCCTTGCTCTCGTCCACCGAGGAAAG
AACTCTCCGACAGGTATTTCTGCGATGAACACTATCAGAGCGAGTATCTG
AACGGCTCCCCACGGTACGGAGCTCGTGTGGCAAATTTCAATCCACCCGA
ACCACCAGCCTGTTCACCAACCCGCAAGAAGAAGAGGGTGTACTATTCTA
CCGCAGATGCTCATCTGCAAAGCAGCTGTTCTGAAAAAGGCTCGAAGCTT
CCAGCTGCGATTGCTCCTTCAACCGGGGTTTCTGCTTCTGGAAAGAATAC
TGAGCAAAACTGTCAGCTGCAGGTCAACTCCGTATCAAACGAAGGCAAAA
AGCCGGAAGCTTCAATTGATATCTTCCCTGACTCCCATGCGTCCTCCTCT
CCGTTGCCGAAGGCGAATAGCCCAGTTGCAGCCACATGTGAGCTGTCTCC
AAAGGGGGCTCCATCTATTCACCCTTCTGACAAGAGAGCTGAAGATGCTG
TTTCCTTTTCGCCAGTGAGCTCTGTCGATGAGAAGGGGGCATCTTCAAAG
CCAACGGGCTCAACGAGTCCAGTGAGCCCAGCGAAGAAGTATCTGAAGGA
AAAGAGAAAAGGAAGGAAACGAAACGAGGAATACGAAACTGAAGACAGAG
AATACGCGTTGTGGGACGCCATAAGAATGCAGAACATGCTGCCTCAAGCA
TTAAAGGAGCTGATTTGGCACTCGGCCGATGGATATGCAGGCTTTGTTCT
CAAGGGAATATTACGAGTTCTGGACGAAGAACTAACAGAAGATGAGAAAA
TCAAGCTTCTGAAAGTTCTACCATGGGAACGCAAAGACTTTTCTTCAACA
CTTGGTTCGAACTCAGATTTCACATGGCGCATGTCTGATTGGCGGATTGT
GGCAAAGGCTCAAGCACTCGCAGCCCAGACTCATGCTGGTGGTGGTGAGG
AATACTCTAAGATAATGCATTGGCCTTTCTTTGTTGAGAATGTGTGTGAT
GAATCAGGAGTTTATCCTGCGAAGTGCGAGCAGTACGGCTTCATAGATTA
CCGTGATGACTCGTCAATCTATGTCTCCTGGAGAACGAGGAAAAAATATG
ATGGCGAATACTCACCTCTCCTCCTCAACATGTCAAATTGTCTGTCGGAT
GACTTGGATGAAGACTTTCTAGAGCGGCCATTAGATGTTTCAGTTAGTGT
AAGAGAGTTGGATTGTGGCTGTGAAGCGGGCTCGGAATCGAAGAAGCCAA
TAATTCCGAGGATGTTTTATGGCCTCCTGCGGGAAGATCTGAAGGTAAGA
ACTCTGCATACCGGTCCAGGCGTAACATTTACCATTATGGATGATTTCGA
AATGTCCCGCTGGATGTGCCGTCATCAACCGACTTGTGGACTCGTTTTAG
GGCTCAGAATTCGTATCTGCGATAAAGTCCAAACGAATGCAGATAAGCAA
TCAGAAGAGTGTTCTGAAGAACGTCTTGGTCGCGGGAAATGCCCTTGTGG
TTCATGTCTTGAAGATGACATGTCTAGTGGTGATGAAATATATGCGGCCC
AAGTGGACAGCGACACGTCTCAAGACGAGGATATTGAGAGTGATGAATAC
GGTGATGATGATGATGATATTGATGATGAGGATGATGATAACGGCGTAAA
CATTGAGGAGGACGTGGTTTACATCCACCCCGGGATGGATTTGTAG

Coding sequence (CDS) from alignment at tig00000900_pilon:778207..780552-

>Ggra2227.t1 ID=Ggra2227.t1|Name=Ggra2227.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2346bp|location=Sequence derived from alignment at tig00000900_pilon:778207..780552- (Gracilaria gracilis GNS1m male)
ATGGCCAAACCCAGACCTATACCCTTACACACTTGGCAGCTACACGAGTT
CACGCTCACCCCGACAGCATGCCGTCTACAGGCGTTTGAGAACAGAAGGC
GCCCTCAACCTGACCCCATCGTCACCCTGCGTTTCTCACAGCCGGGAGAA
GACCCGCAACCTGCTCGCGAACTACATGTTCCTGCTTCTGCCCTCAAGTG
CTCCAGTCCCCCCTTTCAGGCACTAGTGACTGCTGGCTTCCTTGAGTCCA
CCACCCTCGTTGTTCACCTAGAGCCAGACGCTTACTCAGCCTTCAAGATC
ATCGTACCCTTTCTCAAATGTGAAGACATCGACATGAGAGCTATGCCAGA
AAGCTTGCCGATGTATGCGGATCGATGGGGGCTTGATGATCTCTTCGATG
CATGTTTTGCACTCACAGAAATTAAACGTTGGGGAACTTGCGACCAATTC
ATGCTGTTTGCTCTTCCCTTGTTACGATACTTGAAAGTTCCTCAAACTTT
TAAGCACATATTTGCAGTGCGTCTTGGCTACGGGCTCAACGAGGTCATAG
ACTGGATAACAGGTGAAGAAGATTATCGCATCCAGCGTCTTCGCTCAATT
CCTGCTGGACGAGCCGATTCAGAATCTAGCGATTACTCACCCGTCCCTAA
CTGCTCAATTCTCGTGGATGGAGAGCCTTGCTCTCGTCCACCGAGGAAAG
AACTCTCCGACAGGTATTTCTGCGATGAACACTATCAGAGCGAGTATCTG
AACGGCTCCCCACGGTACGGAGCTCGTGTGGCAAATTTCAATCCACCCGA
ACCACCAGCCTGTTCACCAACCCGCAAGAAGAAGAGGGTGTACTATTCTA
CCGCAGATGCTCATCTGCAAAGCAGCTGTTCTGAAAAAGGCTCGAAGCTT
CCAGCTGCGATTGCTCCTTCAACCGGGGTTTCTGCTTCTGGAAAGAATAC
TGAGCAAAACTGTCAGCTGCAGGTCAACTCCGTATCAAACGAAGGCAAAA
AGCCGGAAGCTTCAATTGATATCTTCCCTGACTCCCATGCGTCCTCCTCT
CCGTTGCCGAAGGCGAATAGCCCAGTTGCAGCCACATGTGAGCTGTCTCC
AAAGGGGGCTCCATCTATTCACCCTTCTGACAAGAGAGCTGAAGATGCTG
TTTCCTTTTCGCCAGTGAGCTCTGTCGATGAGAAGGGGGCATCTTCAAAG
CCAACGGGCTCAACGAGTCCAGTGAGCCCAGCGAAGAAGTATCTGAAGGA
AAAGAGAAAAGGAAGGAAACGAAACGAGGAATACGAAACTGAAGACAGAG
AATACGCGTTGTGGGACGCCATAAGAATGCAGAACATGCTGCCTCAAGCA
TTAAAGGAGCTGATTTGGCACTCGGCCGATGGATATGCAGGCTTTGTTCT
CAAGGGAATATTACGAGTTCTGGACGAAGAACTAACAGAAGATGAGAAAA
TCAAGCTTCTGAAAGTTCTACCATGGGAACGCAAAGACTTTTCTTCAACA
CTTGGTTCGAACTCAGATTTCACATGGCGCATGTCTGATTGGCGGATTGT
GGCAAAGGCTCAAGCACTCGCAGCCCAGACTCATGCTGGTGGTGGTGAGG
AATACTCTAAGATAATGCATTGGCCTTTCTTTGTTGAGAATGTGTGTGAT
GAATCAGGAGTTTATCCTGCGAAGTGCGAGCAGTACGGCTTCATAGATTA
CCGTGATGACTCGTCAATCTATGTCTCCTGGAGAACGAGGAAAAAATATG
ATGGCGAATACTCACCTCTCCTCCTCAACATGTCAAATTGTCTGTCGGAT
GACTTGGATGAAGACTTTCTAGAGCGGCCATTAGATGTTTCAGTTAGTGT
AAGAGAGTTGGATTGTGGCTGTGAAGCGGGCTCGGAATCGAAGAAGCCAA
TAATTCCGAGGATGTTTTATGGCCTCCTGCGGGAAGATCTGAAGGTAAGA
ACTCTGCATACCGGTCCAGGCGTAACATTTACCATTATGGATGATTTCGA
AATGTCCCGCTGGATGTGCCGTCATCAACCGACTTGTGGACTCGTTTTAG
GGCTCAGAATTCGTATCTGCGATAAAGTCCAAACGAATGCAGATAAGCAA
TCAGAAGAGTGTTCTGAAGAACGTCTTGGTCGCGGGAAATGCCCTTGTGG
TTCATGTCTTGAAGATGACATGTCTAGTGGTGATGAAATATATGCGGCCC
AAGTGGACAGCGACACGTCTCAAGACGAGGATATTGAGAGTGATGAATAC
GGTGATGATGATGATGATATTGATGATGAGGATGATGATAACGGCGTAAA
CATTGAGGAGGACGTGGTTTACATCCACCCCGGGATGGATTTGTAG