Ggra2214.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2214.t1
Unique NameGgra2214.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length436
Homology
BLAST of Ggra2214.t1 vs. uniprot
Match: A0A2V3J5Y6 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5Y6_9FLOR)

HSP 1 Score: 394 bits (1011), Expect = 2.220e-131
Identity = 211/352 (59.94%), Postives = 247/352 (70.17%), Query Frame = 0
Query:    1 MGYHGFDLVYELQVELGWEREFATAARNEYMKYLQLRAKANDYQACKLTPSRVIAIVWNLHRQWTSDYERTCNALGAFIHHYPPAMRLGLASEQAYANTVEMYKSHFNANPPDSYWGVPICSNKPSSSNVDYLGTLNVSDNADVPLQPAAKSRRRSPTTGST---RDDVAHAPDSTKQVGTGAV-------AQAKSDAKPQKPKKSPGVSRVRHGYVLRPLPPGEKRKRGRPSMSEYIPVAQATSQLQELVGNVAAMDGQLKHPVSGAVSVPGRGSAAMLKSRR--QQVKPHSGVLGAHDINGQTAGAVPG----APVMFKRPRGRPRKDGSWPIPRNRQEPA---LKQKVE 333
            MGY GFDLVYELQVELGWE+EFA AAR EYM+YL+LR KA D+  CKLTPSRVIAIVW+LHRQWT+DYE TC+ALG FIHHYPP MR+G ASE+ YA TVE+YKSHFN +PPDSYWG PIC+   S+S+ DYL +L++  NAD+P     ++RRRSPT  +    R  V  A      V    V       A  K + KP K KK   VSRV+ GYVLRPLPPGEKRKRGRPSMSEYIPV+QA+  + E++  V A++ Q K P SGAVSVPGRGSAA++KSRR  +  K H  VL A DINGQT G   G    A VM KRPRGRPRKD SW + R   E     +K K+E
Sbjct:    1 MGYLGFDLVYELQVELGWEKEFAVAARKEYMRYLELRVKAQDFHTCKLTPSRVIAIVWSLHRQWTADYENTCSALGGFIHHYPPVMRMGFASERTYAATVELYKSHFNESPPDSYWGAPICAK--SASSTDYLSSLHMPPNADMPSHAHGRTRRRSPTAAAAVAVRSSVPSADPVMSAVQHPQVHHPEANAAAIKPETKPVKQKKITRVSRVQQGYVLRPLPPGEKRKRGRPSMSEYIPVSQASEYMPEIMATVPAVEAQAKSPGSGAVSVPGRGSAAIVKSRRLHENNKNHGAVLEAQDINGQTVGEATGSATAAAVMMKRPRGRPRKDTSWAVARGPSEATAVPIKPKIE 350          
BLAST of Ggra2214.t1 vs. uniprot
Match: R7Q8G6 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q8G6_CHOCR)

HSP 1 Score: 221 bits (563), Expect = 3.940e-61
Identity = 175/528 (33.14%), Postives = 245/528 (46.40%), Query Frame = 0
Query:    1 MGYHGFDLVYELQVELGWEREFATAARNEYMKYLQLRAKANDYQACKLTPSRVIAIVWNLHRQWTSDYERTCNALGAFIHHYPPAMRLGLASEQAYANTVEMYKSHFNANPPDSYWGVPICSNKPSSSNVDYLGTLNVSDNADVPLQPAAKSRRRSPT--------------------------TGSTRDDVAHAPDSTKQVGTGAVAQAKS-----DAKPQKPK-------------KSPGVSRVRHG-----YVLRPLPPGEKRKRGRPSMSEYI-----PVAQATSQLQEL-------VGNVAAMDGQLKH-PVSGAVSVPGRG---SAAMLKSRR-----QQVKPHSGVLGAHDINGQTAGAVP-------------------GAPVMFKRPRGRPRKDGSWPIPRNRQEPALKQKVEPLPSVETHVAPVSEPQAVGTHPMGLTDNTLHR----PQDNQSVAVGKEDGNAALGGNDMMDINDQVQKQAEFVSSHQVPSTHFVSPTPVRAGAPQLMENERDPATA 435
            M     DLVYELQVELGW   FA  A +EYM++L+LR ++ D++ CK  PSR +  VW LHRQWT DYE+TC++LG F+HH+PPAMR+ +A E+AYA T+  YK+ F  +PP S+WG  IC+ KP +SN    G  N+   +  P + A  S RRSPT                          T +    + +  D ++    GA AQ +S     D+K   P              +SPG  R R       Y+L+PL PGEKRKRGRPS ++Y+      ++QA+ + ++         G  + + G  +      A S PG+    S A+ K  R     ++V   S      D N +TA   P                   GAP   KRPRGRPRKDGSWP+PR R+  A  +    +P   T  A  ++ +  GT      +N   R    P D+ + A  +  G  A G         Q ++    + +    S+ FV+P    A       N  D A A
Sbjct:    1 MATQSLDLVYELQVELGWSPHFAATAHSEYMRWLRLRTQSGDFEYCKFPPSRAVGTVWGLHRQWTHDYEKTCSSLGGFVHHFPPAMRMNIAREEAYAATLHTYKALFGEDPPSSHWGPAICTYKPLASN----GVTNMLLASKDPPR-ALPSLRRSPTKRDASNHSAPITPTKGKRATTEARRATSAKTTGIGNTTDRSRPSVEGARAQRRSPKTTKDSKKNDPSSSEAIMEDADQAPRSPGRPRKRFSGPSPLYILKPLRPGEKRKRGRPSFADYVLASSLSLSQASGETKKRDPKSPTEKGTASKLTGATQSLRRRKATSSPGKTASPSPAIAKKERTHKPFRRVARWSEASRIGDFN-KTASTNPTSVVQTSSGDQSNNGQPKKGAPGPLKRPRGRPRKDGSWPVPRVRKPEAATKPAAAVPQKSTIKAD-ADGKVQGTQ-----ENEGKRVTPVPSDSPAAAANERSGKVASG---------QAREAPSALPTTSNGSSAFVNPPDPSAENDGATNNVADDAAA 507          
The following BLAST results are available for this feature:
BLAST of Ggra2214.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J5Y62.220e-13159.94Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q8G63.940e-6133.14Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017956AT hook, DNA-binding motifPRINTSPR00929ATHOOKcoord: 184..194
score: 26.52
coord: 303..313
score: 61.74
coord: 214..225
score: 48.96
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 391..435
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 152..166
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 391..413
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 296..326
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..223

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:669371..670678 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2214.t1Ggra2214.t1Gracilaria gracilis GNS1m malemRNAtig00000900_pilon 669371..670678 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2214.t1 ID=Ggra2214.t1|Name=Ggra2214.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=436bp
MGYHGFDLVYELQVELGWEREFATAARNEYMKYLQLRAKANDYQACKLTP
SRVIAIVWNLHRQWTSDYERTCNALGAFIHHYPPAMRLGLASEQAYANTV
EMYKSHFNANPPDSYWGVPICSNKPSSSNVDYLGTLNVSDNADVPLQPAA
KSRRRSPTTGSTRDDVAHAPDSTKQVGTGAVAQAKSDAKPQKPKKSPGVS
RVRHGYVLRPLPPGEKRKRGRPSMSEYIPVAQATSQLQELVGNVAAMDGQ
LKHPVSGAVSVPGRGSAAMLKSRRQQVKPHSGVLGAHDINGQTAGAVPGA
PVMFKRPRGRPRKDGSWPIPRNRQEPALKQKVEPLPSVETHVAPVSEPQA
VGTHPMGLTDNTLHRPQDNQSVAVGKEDGNAALGGNDMMDINDQVQKQAE
FVSSHQVPSTHFVSPTPVRAGAPQLMENERDPATA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017956AT_hook_DNA-bd_motif