Ggra2214.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2214.t1
Unique NameGgra2214.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length436
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:669371..670678 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog395019.Bmul_0148
Max annot lvl28216|Betaproteobacteria
Evalue2.95e-05
EggNOG OGsCOG4278@1|root,COG4278@2|Bacteria,1RI3P@1224|Proteobacteria,2W0YI@28216|Betaproteobacteria,1K6BC@119060|Burkholderiaceae
Descriptionphenylacetate-CoA ligase activity
COG categoryH
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2214Ggra2214Gracilaria gracilis GNS1m malegenetig00000900_pilon 669371..670678 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2214.t1.start1Ggra2214.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 669371..669373 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2214.t1.CDS1Ggra2214.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 669371..670678 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2214.t1.exon1Ggra2214.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 669371..670678 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2214.t1.stop1Ggra2214.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 670676..670678 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2214.t1Ggra2214.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 669371..670678 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2214.t1 ID=Ggra2214.t1|Name=Ggra2214.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=436bp
MGYHGFDLVYELQVELGWEREFATAARNEYMKYLQLRAKANDYQACKLTP
SRVIAIVWNLHRQWTSDYERTCNALGAFIHHYPPAMRLGLASEQAYANTV
EMYKSHFNANPPDSYWGVPICSNKPSSSNVDYLGTLNVSDNADVPLQPAA
KSRRRSPTTGSTRDDVAHAPDSTKQVGTGAVAQAKSDAKPQKPKKSPGVS
RVRHGYVLRPLPPGEKRKRGRPSMSEYIPVAQATSQLQELVGNVAAMDGQ
LKHPVSGAVSVPGRGSAAMLKSRRQQVKPHSGVLGAHDINGQTAGAVPGA
PVMFKRPRGRPRKDGSWPIPRNRQEPALKQKVEPLPSVETHVAPVSEPQA
VGTHPMGLTDNTLHRPQDNQSVAVGKEDGNAALGGNDMMDINDQVQKQAE
FVSSHQVPSTHFVSPTPVRAGAPQLMENERDPATA*
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spliced messenger RNA

>Ggra2214.t1 ID=Ggra2214.t1|Name=Ggra2214.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1308bp|location=Sequence derived from alignment at tig00000900_pilon:669371..670678+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTTATCACGGTTTCGATTTGGTGTACGAGCTCCAAGTGGAGCTCGG
ATGGGAGAGGGAATTTGCTACTGCTGCACGCAACGAGTATATGAAGTACC
TCCAGCTTCGAGCAAAGGCTAATGACTATCAAGCGTGCAAGTTGACTCCC
AGTCGAGTCATTGCCATTGTGTGGAATTTGCATCGCCAGTGGACATCCGA
CTATGAACGCACTTGCAATGCTTTAGGAGCCTTTATACATCATTATCCCC
CTGCTATGCGCTTGGGGCTTGCCAGTGAGCAAGCATACGCAAACACCGTC
GAAATGTACAAGAGCCATTTCAATGCCAATCCACCCGATTCCTACTGGGG
CGTCCCCATTTGCTCCAACAAACCCTCATCATCTAATGTTGACTACCTCG
GCACTCTCAATGTGTCGGATAATGCCGATGTACCTTTACAACCCGCAGCG
AAGAGCAGGAGGCGATCCCCAACCACGGGAAGTACTCGCGACGATGTCGC
TCATGCGCCCGATTCTACCAAGCAAGTTGGTACTGGTGCCGTGGCGCAAG
CCAAATCGGATGCAAAACCACAAAAGCCAAAGAAATCACCGGGGGTTAGC
CGCGTTCGACATGGATACGTACTGCGTCCTTTACCTCCTGGAGAGAAGCG
GAAGCGAGGGCGTCCGAGCATGTCCGAGTACATCCCTGTAGCTCAAGCCA
CCTCACAATTGCAAGAGCTAGTTGGAAATGTCGCCGCAATGGATGGACAA
CTTAAGCACCCTGTCTCTGGTGCCGTCTCAGTCCCAGGCCGTGGAAGTGC
TGCGATGCTTAAAAGTCGCCGTCAGCAAGTTAAGCCACACAGTGGTGTGC
TAGGTGCGCATGACATCAATGGTCAAACCGCTGGTGCCGTACCAGGAGCG
CCGGTCATGTTCAAAAGACCAAGAGGCCGTCCTCGTAAGGATGGCTCATG
GCCGATTCCCCGCAATCGCCAGGAACCAGCTCTGAAGCAAAAAGTTGAAC
CACTCCCTTCTGTTGAGACGCACGTGGCCCCAGTATCAGAACCACAGGCA
GTTGGCACTCATCCCATGGGCTTGACGGATAACACCCTTCATCGCCCACA
GGACAACCAGAGTGTTGCAGTTGGAAAGGAGGACGGAAATGCAGCTTTGG
GGGGAAACGATATGATGGACATTAACGACCAGGTACAGAAACAGGCCGAA
TTTGTCTCATCTCACCAGGTACCATCGACACATTTCGTTTCGCCCACCCC
TGTTCGGGCTGGAGCCCCGCAGCTGATGGAGAATGAGAGAGATCCAGCAA
CAGCGTAG
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protein sequence of Ggra2214.t1

>Ggra2214.t1 ID=Ggra2214.t1|Name=Ggra2214.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=436bp
MGYHGFDLVYELQVELGWEREFATAARNEYMKYLQLRAKANDYQACKLTP
SRVIAIVWNLHRQWTSDYERTCNALGAFIHHYPPAMRLGLASEQAYANTV
EMYKSHFNANPPDSYWGVPICSNKPSSSNVDYLGTLNVSDNADVPLQPAA
KSRRRSPTTGSTRDDVAHAPDSTKQVGTGAVAQAKSDAKPQKPKKSPGVS
RVRHGYVLRPLPPGEKRKRGRPSMSEYIPVAQATSQLQELVGNVAAMDGQ
LKHPVSGAVSVPGRGSAAMLKSRRQQVKPHSGVLGAHDINGQTAGAVPGA
PVMFKRPRGRPRKDGSWPIPRNRQEPALKQKVEPLPSVETHVAPVSEPQA
VGTHPMGLTDNTLHRPQDNQSVAVGKEDGNAALGGNDMMDINDQVQKQAE
FVSSHQVPSTHFVSPTPVRAGAPQLMENERDPATA*
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mRNA from alignment at tig00000900_pilon:669371..670678+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2214.t1 ID=Ggra2214.t1|Name=Ggra2214.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1308bp|location=Sequence derived from alignment at tig00000900_pilon:669371..670678+ (Gracilaria gracilis GNS1m male)
ATGGGTTATCACGGTTTCGATTTGGTGTACGAGCTCCAAGTGGAGCTCGG
ATGGGAGAGGGAATTTGCTACTGCTGCACGCAACGAGTATATGAAGTACC
TCCAGCTTCGAGCAAAGGCTAATGACTATCAAGCGTGCAAGTTGACTCCC
AGTCGAGTCATTGCCATTGTGTGGAATTTGCATCGCCAGTGGACATCCGA
CTATGAACGCACTTGCAATGCTTTAGGAGCCTTTATACATCATTATCCCC
CTGCTATGCGCTTGGGGCTTGCCAGTGAGCAAGCATACGCAAACACCGTC
GAAATGTACAAGAGCCATTTCAATGCCAATCCACCCGATTCCTACTGGGG
CGTCCCCATTTGCTCCAACAAACCCTCATCATCTAATGTTGACTACCTCG
GCACTCTCAATGTGTCGGATAATGCCGATGTACCTTTACAACCCGCAGCG
AAGAGCAGGAGGCGATCCCCAACCACGGGAAGTACTCGCGACGATGTCGC
TCATGCGCCCGATTCTACCAAGCAAGTTGGTACTGGTGCCGTGGCGCAAG
CCAAATCGGATGCAAAACCACAAAAGCCAAAGAAATCACCGGGGGTTAGC
CGCGTTCGACATGGATACGTACTGCGTCCTTTACCTCCTGGAGAGAAGCG
GAAGCGAGGGCGTCCGAGCATGTCCGAGTACATCCCTGTAGCTCAAGCCA
CCTCACAATTGCAAGAGCTAGTTGGAAATGTCGCCGCAATGGATGGACAA
CTTAAGCACCCTGTCTCTGGTGCCGTCTCAGTCCCAGGCCGTGGAAGTGC
TGCGATGCTTAAAAGTCGCCGTCAGCAAGTTAAGCCACACAGTGGTGTGC
TAGGTGCGCATGACATCAATGGTCAAACCGCTGGTGCCGTACCAGGAGCG
CCGGTCATGTTCAAAAGACCAAGAGGCCGTCCTCGTAAGGATGGCTCATG
GCCGATTCCCCGCAATCGCCAGGAACCAGCTCTGAAGCAAAAAGTTGAAC
CACTCCCTTCTGTTGAGACGCACGTGGCCCCAGTATCAGAACCACAGGCA
GTTGGCACTCATCCCATGGGCTTGACGGATAACACCCTTCATCGCCCACA
GGACAACCAGAGTGTTGCAGTTGGAAAGGAGGACGGAAATGCAGCTTTGG
GGGGAAACGATATGATGGACATTAACGACCAGGTACAGAAACAGGCCGAA
TTTGTCTCATCTCACCAGGTACCATCGACACATTTCGTTTCGCCCACCCC
TGTTCGGGCTGGAGCCCCGCAGCTGATGGAGAATGAGAGAGATCCAGCAA
CAGCGTAG
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Coding sequence (CDS) from alignment at tig00000900_pilon:669371..670678+

>Ggra2214.t1 ID=Ggra2214.t1|Name=Ggra2214.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1308bp|location=Sequence derived from alignment at tig00000900_pilon:669371..670678+ (Gracilaria gracilis GNS1m male)
ATGGGTTATCACGGTTTCGATTTGGTGTACGAGCTCCAAGTGGAGCTCGG
ATGGGAGAGGGAATTTGCTACTGCTGCACGCAACGAGTATATGAAGTACC
TCCAGCTTCGAGCAAAGGCTAATGACTATCAAGCGTGCAAGTTGACTCCC
AGTCGAGTCATTGCCATTGTGTGGAATTTGCATCGCCAGTGGACATCCGA
CTATGAACGCACTTGCAATGCTTTAGGAGCCTTTATACATCATTATCCCC
CTGCTATGCGCTTGGGGCTTGCCAGTGAGCAAGCATACGCAAACACCGTC
GAAATGTACAAGAGCCATTTCAATGCCAATCCACCCGATTCCTACTGGGG
CGTCCCCATTTGCTCCAACAAACCCTCATCATCTAATGTTGACTACCTCG
GCACTCTCAATGTGTCGGATAATGCCGATGTACCTTTACAACCCGCAGCG
AAGAGCAGGAGGCGATCCCCAACCACGGGAAGTACTCGCGACGATGTCGC
TCATGCGCCCGATTCTACCAAGCAAGTTGGTACTGGTGCCGTGGCGCAAG
CCAAATCGGATGCAAAACCACAAAAGCCAAAGAAATCACCGGGGGTTAGC
CGCGTTCGACATGGATACGTACTGCGTCCTTTACCTCCTGGAGAGAAGCG
GAAGCGAGGGCGTCCGAGCATGTCCGAGTACATCCCTGTAGCTCAAGCCA
CCTCACAATTGCAAGAGCTAGTTGGAAATGTCGCCGCAATGGATGGACAA
CTTAAGCACCCTGTCTCTGGTGCCGTCTCAGTCCCAGGCCGTGGAAGTGC
TGCGATGCTTAAAAGTCGCCGTCAGCAAGTTAAGCCACACAGTGGTGTGC
TAGGTGCGCATGACATCAATGGTCAAACCGCTGGTGCCGTACCAGGAGCG
CCGGTCATGTTCAAAAGACCAAGAGGCCGTCCTCGTAAGGATGGCTCATG
GCCGATTCCCCGCAATCGCCAGGAACCAGCTCTGAAGCAAAAAGTTGAAC
CACTCCCTTCTGTTGAGACGCACGTGGCCCCAGTATCAGAACCACAGGCA
GTTGGCACTCATCCCATGGGCTTGACGGATAACACCCTTCATCGCCCACA
GGACAACCAGAGTGTTGCAGTTGGAAAGGAGGACGGAAATGCAGCTTTGG
GGGGAAACGATATGATGGACATTAACGACCAGGTACAGAAACAGGCCGAA
TTTGTCTCATCTCACCAGGTACCATCGACACATTTCGTTTCGCCCACCCC
TGTTCGGGCTGGAGCCCCGCAGCTGATGGAGAATGAGAGAGATCCAGCAA
CAGCGTAG
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