Ggra2208.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2208.t1
Unique NameGgra2208.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length176
Homology
BLAST of Ggra2208.t1 vs. uniprot
Match: A0A2V3J357 (Zinc finger matrin-type protein 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J357_9FLOR)

HSP 1 Score: 241 bits (614), Expect = 8.980e-79
Identity = 128/175 (73.14%), Postives = 146/175 (83.43%), Query Frame = 0
Query:    1 MNSQSRDVSRRSWDVAAFEKRAQERQRAEKXXXXXXXXXXKAARDASHVDDDPFAPTRAWLTKRDYDIDLESKVGTVEVVASVQKSGFYCKLCDSTMKDSNRYLQHVNSRFHQKALGMSMRVRRSTVQDIKKAFEEEVRKRNAQKEQQSQGPMTLKERIKERKAKEKNKTSETSD 175
            M+  +RDVSR++WD+AAFEKRA++R+RAEK          KAAR+ASH+DDDPFAPTRAWLTKRD+DIDLESKVGTVEVV SVQKSGFYCKLCD+TMKDSNRYLQHVNSRFHQKALGMSMRVRRST Q+I+ AF+EEVRKR AQ  +   GP+TLK RI  RKA+EK K S   D
Sbjct:    1 MSFPARDVSRKNWDLAAFEKRAKDRRRAEKEAEAEKLRAHKAAREASHIDDDPFAPTRAWLTKRDHDIDLESKVGTVEVVPSVQKSGFYCKLCDTTMKDSNRYLQHVNSRFHQKALGMSMRVRRSTAQEIRNAFDEEVRKRAAQGTKARNGPLTLKRRIIARKAEEKKKRSTEGD 175          
BLAST of Ggra2208.t1 vs. uniprot
Match: R7Q6B4 (Zinc finger, matrin type 2, putative n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6B4_CHOCR)

HSP 1 Score: 174 bits (440), Expect = 2.350e-52
Identity = 89/159 (55.97%), Postives = 117/159 (73.58%), Query Frame = 0
Query:    1 MNSQSRDVSRRSWDVAAFEKRAQERQRAEKXXXXXXXXXXKAARDASHVDDDPFAPTRAWLTKRDYDIDLESKVGTVEVVASVQKSGFYCKLCDSTMKDSNRYLQHVNSRFHQKALGMSMRVRRSTVQDIKKAFEEEVRKRNAQKEQQSQGPMTLKERI 159
            M S S DVSRRSWDV A+E+RA ER+RAE           KA+R   H+DDDPFAPTRAWL KRD+ ID E KVG+ E+V S+Q  GF CK C  T+KDSNRYL HVNS+ HQKALGMSMRV+RST ++++ AF+  V+++   K+++++  +TL++RI
Sbjct:    1 MASGSGDVSRRSWDVQAYERRAVERKRAESEAEQEKLRARKASRQQPHIDDDPFAPTRAWLRKRDHKIDFEGKVGSSEIVGSIQGGGFNCKTCSVTLKDSNRYLAHVNSKSHQKALGMSMRVKRSTPEEVRLAFQRAVKEKEESKQRKNKPMVTLEDRI 159          
BLAST of Ggra2208.t1 vs. uniprot
Match: A0A7S2ZNG5 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZNG5_9RHOD)

HSP 1 Score: 116 bits (291), Expect = 2.010e-29
Identity = 73/130 (56.15%), Postives = 95/130 (73.08%), Query Frame = 0
Query:    7 DVSRRSWDVAAFEKRAQERQRAEKXXXXXXXXXXKAARDASHVDDDPFAPTRAWLTKRDYDIDLESKVGTVEVV--ASVQKSGFYCKLCDSTMKDSNRYLQHVNSRFHQKALGMSMRVRRSTVQDIKKAF 134
            DV R  +D A F++RA ER+RA+ XXXXXXXXXX A+R  +   +DPFAPTR WL  R   +DLESK+G  E+V  A  +++GFYC +C+S  KDS  YL H+NSRFHQK LG+SMRV+R+TV ++K  F
Sbjct:    9 DVVRNRFDKATFQRRADERKRADXXXXXXXXXXXXASRPNT---EDPFAPTRPWLEARKDAVDLESKLGKTEIVPGARDKRAGFYCNICESLHKDSQAYLNHMNSRFHQKNLGLSMRVKRATVDEVKDRF 135          
BLAST of Ggra2208.t1 vs. uniprot
Match: A0A0C2FC59 (Matrin-type domain-containing protein n=4 Tax=Ancylostoma TaxID=29169 RepID=A0A0C2FC59_9BILA)

HSP 1 Score: 95.5 bits (236), Expect = 1.740e-21
Identity = 53/144 (36.81%), Postives = 87/144 (60.42%), Query Frame = 0
Query:   10 RRSWDVAAFEKRAQERQRAEKXXXXXXXXXXKAARDASHVDDDPFAPTRAWLTKRDYDIDLESKVGTVEVV----ASVQKSGFYCKLCDSTMKDSNRYLQHVNSRFHQKALGMSMRVRRSTVQDIKKAFEEEVRKRNAQKEQQS 149
            RR WD   +++RA ER + EK          +A R+     D+P    R  L  RDY +DLESK+G   V+     + +  G+YC +CD  +KDS  +L H+N + HQ+ +GMSM+VRRST++D+K+ F+ ++ ++  +K+Q++
Sbjct:   17 RRKWDPEEYQRRAHERMKTEKLE--------EAVRNGQKPKDEPKVK-REMLKARDYKVDLESKLGRSVVINKTTPAAETGGYYCDVCDCVVKDSINFLDHINGKNHQRNMGMSMKVRRSTLEDVKERFKLKMAEKELEKKQKN 151          
BLAST of Ggra2208.t1 vs. uniprot
Match: A0A250XEA1 (U1-type domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XEA1_9CHLO)

HSP 1 Score: 94.7 bits (234), Expect = 7.610e-21
Identity = 53/138 (38.41%), Postives = 80/138 (57.97%), Query Frame = 0
Query:    7 DVSRRSWDVAAFEKRAQERQRAEKXXXXXXXXXXKAARDASHVDDDPFAP----TRAWLTKRDYDIDLESKVGTVEVVASV----QKSGFYCKLCDSTMKDSNRYLQHVNSRFHQKALGMSMRVRRSTVQDIKKAFEE 136
            + SRR+WD   F ++A ER+R +K            AR    ++ DP        R+ L +RD+ IDL S++G  +VV       Q++GFYC +CD  ++DS  YL H+N ++H + LGM+MRV +STV+ +KK  EE
Sbjct:   16 NTSRRTWDKEEFRQKANERERKDKDNEKYD------ARKRKRLERDPLHQGIIVERSQLKQRDFQIDLASRLGKTQVVGVNTPLNQQAGFYCNVCDCVLRDSQSYLDHINGKWHNRNLGMTMRVEKSTVEQVKKKLEE 147          
BLAST of Ggra2208.t1 vs. uniprot
Match: A0A6P8J4A7 (zinc finger matrin-type protein 2-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8J4A7_ACTTE)

HSP 1 Score: 92.4 bits (228), Expect = 3.550e-20
Identity = 57/150 (38.00%), Postives = 81/150 (54.00%), Query Frame = 0
Query:    7 DVSRRSWDVAAFEKRAQERQRAEKXXXXXXXXXXKAARDASHVDDDPFA------PTRAWLTKRDYDIDLESKVGTVEVVAS----VQKSGFYCKLCDSTMKDSNRYLQHVNSRFHQKALGMSMRVRRSTVQDIKKAFEEEVRKRNAQKE 146
            D  RR+WD   ++K+A+ER + E+                   DD+P +        R  L KR+YD+DLES +G   V+       Q  G+YC +CD  +KDS  +L H+N + HQ+ LGMSMRV RS+V  +KK FE   RKR  +K+
Sbjct:    9 DNFRRTWDKDEYQKKAKERLKGEE-------------------DDEPSSFKRHPPVKRELLKKREYDVDLESNLGKSVVITKNSSMSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSSVDQVKKRFELNKRKREEEKQ 139          
BLAST of Ggra2208.t1 vs. uniprot
Match: A0A183FE01 (Matrin-type domain-containing protein n=1 Tax=Heligmosomoides polygyrus TaxID=6339 RepID=A0A183FE01_HELPZ)

HSP 1 Score: 92.4 bits (228), Expect = 4.520e-20
Identity = 54/144 (37.50%), Postives = 86/144 (59.72%), Query Frame = 0
Query:   10 RRSWDVAAFEKRAQERQRAEKXXXXXXXXXXKAARDASHVDDDPFAPTRAWLTKRDYDIDLESKVGTVEVV----ASVQKSGFYCKLCDSTMKDSNRYLQHVNSRFHQKALGMSMRVRRSTVQDIKKAFEEEVRKRNAQKEQQS 149
            RR WD   FEK+A ER +AEK          +A +      D+P    R  L  RDY +DLESK+G   V+     + +  G+YC +CD  +KDS  +L H+N + HQ+ +GMSM+V+RST+ D+K+ F+ ++ ++  +K+Q++
Sbjct:   17 RRKWDQEEFEKKATERIKAEKLE--------EAIKKGDKPRDEPKVK-RELLKARDYKVDLESKLGRSVVINKTTPAAETGGYYCDVCDCVVKDSINFLDHINGKNHQRNMGMSMKVKRSTLDDVKERFKIKLAEKEYEKKQKN 151          
BLAST of Ggra2208.t1 vs. uniprot
Match: A0A6P4Y857 (zinc finger matrin-type protein 2-like n=2 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4Y857_BRABE)

HSP 1 Score: 92.0 bits (227), Expect = 4.990e-20
Identity = 52/136 (38.24%), Postives = 78/136 (57.35%), Query Frame = 0
Query:   10 RRSWDVAAFEKRAQERQRAEKXXXXXXXXXXKAARDASHVDDDPFAPTRAWLTKRDYDIDLESKVGTVEVVASV----QKSGFYCKLCDSTMKDSNRYLQHVNSRFHQKALGMSMRVRRSTVQDIKKAFEEEVRKR 141
            RR WDV  +E+ A++R   E+          K A D+ H         R +L +RDY +DLES++G  +V++       + G+YC +CD  +KDS  +L H+N + HQ+ LGMSMR+ RST+  +KK FE   +KR
Sbjct:   13 RRKWDVEEYEEMARKRLEEER----------KKAEDSQHAQP---PVKRDFLRRRDYKVDLESQLGKTKVISKSAPLSDQGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRIERSTLDQVKKRFELNKKKR 135          
BLAST of Ggra2208.t1 vs. uniprot
Match: A0A814C2B5 (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A814C2B5_9BILA)

HSP 1 Score: 92.0 bits (227), Expect = 4.990e-20
Identity = 56/144 (38.89%), Postives = 77/144 (53.47%), Query Frame = 0
Query:   10 RRSWDVAAFEKRAQERQRAEKXXXXXXXXXXKAARDASHVDDDPFAPT--RAWLTKRDYDIDLESKVGTVEVVASV----QKSGFYCKLCDSTMKDSNRYLQHVNSRFHQKALGMSMRVRRSTVQDIKKAFEEEVRKRNAQKEQ 147
            RR WD   +EK +Q+R+  +                    D+D  AP   R  L  RDY IDL+SK+G   +V+      Q  G+YC +CD  +KDS  +L H+N R HQK LGMSM++ RSTV  +KK FE   +K   +K+Q
Sbjct:   11 RRKWDTEEYEKESQKRELED--------------------DEDEVAPKPKRELLKARDYKIDLDSKLGKTVIVSKATPPNQAGGYYCNICDCVVKDSINFLDHINGRKHQKNLGMSMKIERSTVDQVKKRFELNKKKLEEKKKQ 134          
BLAST of Ggra2208.t1 vs. uniprot
Match: A0A804LB89 (U1-type domain-containing protein n=6 Tax=Magnoliopsida TaxID=3398 RepID=A0A804LB89_MUSAM)

HSP 1 Score: 92.0 bits (227), Expect = 5.450e-20
Identity = 52/130 (40.00%), Postives = 78/130 (60.00%), Query Frame = 0
Query:   10 RRSWDVAAFEKRAQERQRAEKXXXXXXXXXXKAARDASHVDDDPFAPTRAWLTKRDYDIDLESKVGTVEVVASV----QKSGFYCKLCDSTMKDSNRYLQHVNSRFHQKALGMSMRVRRSTVQDIKKAFE 135
            RR WD   F ++A+ER+R E+          K+   A  V   P       L  RDY++DLES++G  +VV  +    Q++G+YC +C+  +KDS  YL H+N + HQ+ALGMSMRV R+T+Q +++ FE
Sbjct:   16 RRKWDREEFLQKARERERQEEEGRF------KSKEKAPPVQRKP-------LKHRDYEVDLESRLGKTQVVTPIAPLSQQAGYYCAVCECVVKDSANYLDHINGKKHQRALGMSMRVERATLQQVQERFE 132          
The following BLAST results are available for this feature:
BLAST of Ggra2208.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J3578.980e-7973.14Zinc finger matrin-type protein 2 n=1 Tax=Gracilar... [more]
R7Q6B42.350e-5255.97Zinc finger, matrin type 2, putative n=1 Tax=Chond... [more]
A0A7S2ZNG52.010e-2956.15Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A0C2FC591.740e-2136.81Matrin-type domain-containing protein n=4 Tax=Ancy... [more]
A0A250XEA17.610e-2138.41U1-type domain-containing protein n=1 Tax=Chlamydo... [more]
A0A6P8J4A73.550e-2038.00zinc finger matrin-type protein 2-like n=1 Tax=Act... [more]
A0A183FE014.520e-2037.50Matrin-type domain-containing protein n=1 Tax=Heli... [more]
A0A6P4Y8574.990e-2038.24zinc finger matrin-type protein 2-like n=2 Tax=Bra... [more]
A0A814C2B54.990e-2038.89Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]
A0A804LB895.450e-2040.00U1-type domain-containing protein n=6 Tax=Magnolio... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 15..49
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 155..175
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 138..175
IPR003604Matrin/U1-C-like, C2H2-type zinc fingerSMARTSM00451ZnF_U1_5coord: 85..119
e-value: 4.4E-7
score: 39.5
IPR022755Zinc finger, double-stranded RNA bindingPFAMPF12171zf-C2H2_jazcoord: 88..112
e-value: 3.7E-5
score: 23.9
IPR040107U4/U6.U5 small nuclear ribonucleoprotein component Snu23PANTHERPTHR45986ZINC FINGER MATRIN-TYPE PROTEIN 2coord: 4..171
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 90..112
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 86..127

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:652899..653426 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2208.t1Ggra2208.t1Gracilaria gracilis GNS1m malemRNAtig00000900_pilon 652899..653426 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2208.t1 ID=Ggra2208.t1|Name=Ggra2208.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=176bp
MNSQSRDVSRRSWDVAAFEKRAQERQRAEKEAEEEKRRARKAARDASHVD
DDPFAPTRAWLTKRDYDIDLESKVGTVEVVASVQKSGFYCKLCDSTMKDS
NRYLQHVNSRFHQKALGMSMRVRRSTVQDIKKAFEEEVRKRNAQKEQQSQ
GPMTLKERIKERKAKEKNKTSETSD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003604Matrin/U1-like-C_Znf_C2H2
IPR022755Znf_C2H2_jaz
IPR040107Snu23
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf