Ggra2208.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2208.t1
Unique NameGgra2208.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length176
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:652899..653426 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703458.1
Preferred nameSNU23
PFAMszf-C2H2_jaz,zf-met
Max annot lvl2759|Eukaryota
KEGG koko:K12848
KEGG Pathwayko03040,map03040
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0030532,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1990904
Evalue3.01e-26
EggNOG OGsKOG4727@1|root,KOG4727@2759|Eukaryota
DescriptionmRNA splicing, via spliceosome
COG categoryA
BRITEko00000,ko00001,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2208Ggra2208Gracilaria gracilis GNS1m malegenetig00000900_pilon 652899..653426 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2208.t1.stop1Ggra2208.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 652899..652901 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2208.t1.CDS1Ggra2208.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 652899..653426 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2208.t1.exon1Ggra2208.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 652899..653426 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2208.t1.start1Ggra2208.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 653424..653426 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2208.t1Ggra2208.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 652899..653426 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2208.t1 ID=Ggra2208.t1|Name=Ggra2208.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=176bp
MNSQSRDVSRRSWDVAAFEKRAQERQRAEKEAEEEKRRARKAARDASHVD
DDPFAPTRAWLTKRDYDIDLESKVGTVEVVASVQKSGFYCKLCDSTMKDS
NRYLQHVNSRFHQKALGMSMRVRRSTVQDIKKAFEEEVRKRNAQKEQQSQ
GPMTLKERIKERKAKEKNKTSETSD*
back to top

spliced messenger RNA

>Ggra2208.t1 ID=Ggra2208.t1|Name=Ggra2208.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=528bp|location=Sequence derived from alignment at tig00000900_pilon:652899..653426- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTCTCAATCACGCGACGTATCACGCCGAAGTTGGGACGTAGCGGC
TTTCGAAAAAAGGGCTCAAGAACGGCAGCGTGCGGAAAAAGAAGCTGAGG
AAGAAAAACGACGCGCGCGCAAAGCCGCACGGGACGCCTCTCACGTTGAT
GATGATCCATTTGCTCCCACTCGCGCTTGGCTCACCAAACGAGATTATGA
TATTGACTTGGAATCCAAAGTTGGCACTGTTGAGGTCGTCGCCTCGGTCC
AGAAAAGTGGCTTCTATTGTAAACTATGTGATTCTACCATGAAGGATTCT
AATAGGTACTTGCAGCATGTCAACAGTCGCTTCCATCAAAAAGCTCTAGG
AATGTCTATGAGAGTGAGAAGATCTACCGTACAAGATATCAAGAAGGCCT
TTGAAGAGGAGGTGCGTAAACGAAACGCTCAGAAGGAACAACAGTCACAA
GGTCCCATGACACTAAAAGAACGCATAAAGGAGCGGAAAGCGAAGGAAAA
GAATAAGACTTCGGAGACCTCAGACTAA
back to top

protein sequence of Ggra2208.t1

>Ggra2208.t1 ID=Ggra2208.t1|Name=Ggra2208.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=176bp
MNSQSRDVSRRSWDVAAFEKRAQERQRAEKEAEEEKRRARKAARDASHVD
DDPFAPTRAWLTKRDYDIDLESKVGTVEVVASVQKSGFYCKLCDSTMKDS
NRYLQHVNSRFHQKALGMSMRVRRSTVQDIKKAFEEEVRKRNAQKEQQSQ
GPMTLKERIKERKAKEKNKTSETSD*
back to top

mRNA from alignment at tig00000900_pilon:652899..653426-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2208.t1 ID=Ggra2208.t1|Name=Ggra2208.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=528bp|location=Sequence derived from alignment at tig00000900_pilon:652899..653426- (Gracilaria gracilis GNS1m male)
ATGAATTCTCAATCACGCGACGTATCACGCCGAAGTTGGGACGTAGCGGC
TTTCGAAAAAAGGGCTCAAGAACGGCAGCGTGCGGAAAAAGAAGCTGAGG
AAGAAAAACGACGCGCGCGCAAAGCCGCACGGGACGCCTCTCACGTTGAT
GATGATCCATTTGCTCCCACTCGCGCTTGGCTCACCAAACGAGATTATGA
TATTGACTTGGAATCCAAAGTTGGCACTGTTGAGGTCGTCGCCTCGGTCC
AGAAAAGTGGCTTCTATTGTAAACTATGTGATTCTACCATGAAGGATTCT
AATAGGTACTTGCAGCATGTCAACAGTCGCTTCCATCAAAAAGCTCTAGG
AATGTCTATGAGAGTGAGAAGATCTACCGTACAAGATATCAAGAAGGCCT
TTGAAGAGGAGGTGCGTAAACGAAACGCTCAGAAGGAACAACAGTCACAA
GGTCCCATGACACTAAAAGAACGCATAAAGGAGCGGAAAGCGAAGGAAAA
GAATAAGACTTCGGAGACCTCAGACTAA
back to top

Coding sequence (CDS) from alignment at tig00000900_pilon:652899..653426-

>Ggra2208.t1 ID=Ggra2208.t1|Name=Ggra2208.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=528bp|location=Sequence derived from alignment at tig00000900_pilon:652899..653426- (Gracilaria gracilis GNS1m male)
ATGAATTCTCAATCACGCGACGTATCACGCCGAAGTTGGGACGTAGCGGC
TTTCGAAAAAAGGGCTCAAGAACGGCAGCGTGCGGAAAAAGAAGCTGAGG
AAGAAAAACGACGCGCGCGCAAAGCCGCACGGGACGCCTCTCACGTTGAT
GATGATCCATTTGCTCCCACTCGCGCTTGGCTCACCAAACGAGATTATGA
TATTGACTTGGAATCCAAAGTTGGCACTGTTGAGGTCGTCGCCTCGGTCC
AGAAAAGTGGCTTCTATTGTAAACTATGTGATTCTACCATGAAGGATTCT
AATAGGTACTTGCAGCATGTCAACAGTCGCTTCCATCAAAAAGCTCTAGG
AATGTCTATGAGAGTGAGAAGATCTACCGTACAAGATATCAAGAAGGCCT
TTGAAGAGGAGGTGCGTAAACGAAACGCTCAGAAGGAACAACAGTCACAA
GGTCCCATGACACTAAAAGAACGCATAAAGGAGCGGAAAGCGAAGGAAAA
GAATAAGACTTCGGAGACCTCAGACTAA
back to top