Ggra2201.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra2201.t1
Unique Name	Ggra2201.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	253

Homology

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BLAST of Ggra2201.t1 vs. uniprot
Match: A0A2V3J1H9 (Vacuolar protein sorting-associated protein 37A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1H9_9FLOR)

HSP 1 Score: 338 bits (868), Expect = 5.640e-115
Identity = 179/256 (69.92%), Postives = 213/256 (83.20%), Query Frame = 0

Query:    1 MWTGSSGAYRAPHPTQAPGDAPHTMWNNQDSGPSAYMWERDEVSRRLPHHLNPSPAPNARLEVNQQ--YSRPQ--DLNNSADGIPDAPRAFPELESMSLRDLRVLDEERARFDDFVSKHQYQQQLDSIVSRERSNVEAFEREHLAITARMDEAADEQALAKLRENVAKLEEEVWSLQKQKDEWMEKNSPERLIERLRIAINESETKSEALEKSMLSSSMHFDDFLSQYIACRQKYHERLWKLEQLQMEVKKKSFGR 252
            MWTGSSGAYRA   TQ  GDA H  WN+QD+  + YMWERDEVS R+ H  +PS   N+ L+ +Q   YS P+  +++ SADG+PD P++FPELESMSLRDLR+L EERARFDDFVSKHQYQQQLDSIVS+ R+NV+A EREH+ ITARMDEA D++AL KLR +VA+LE+EV +L KQK+EW+ +NSPERL+ERLR A+ ESE+ SEALEK+MLSSSMHFD+FLSQYIACRQKYHER  KLEQLQMEVKKKSFGR
Sbjct:    1 MWTGSSGAYRASQSTQPTGDASHPPWNSQDARGTGYMWERDEVSNRVSHRSSPSSTTNSGLDASQSGPYSGPRAPEVDASADGLPDPPKSFPELESMSLRDLRLLHEERARFDDFVSKHQYQQQLDSIVSKVRANVDALEREHVTITARMDEAVDDEALEKLRRDVAELEKEVQALHKQKEEWLGQNSPERLMERLRTAMRESESTSEALEKNMLSSSMHFDEFLSQYIACRQKYHERSLKLEQLQMEVKKKSFGR 256

[Close]

BLAST of Ggra2201.t1 vs. uniprot
Match: vacuolar protein sorting-associated protein 37A n=1 Tax=Colletes gigas TaxID=935657 RepID=UPI001C9B6F58 (vacuolar protein sorting-associated protein 37A n=1 Tax=Colletes gigas TaxID=935657 RepID=UPI001C9B6F58)

HSP 1 Score: 60.1 bits (144), Expect = 8.110e-7
Identity = 55/186 (29.57%), Postives = 93/186 (50.00%), Query Frame = 0

Query:   63 VNQQYSRPQDLNNSADGIPDAPRAFPELESMSLRDLRVLDEERARFDDFVSKHQYQQQLDSIVSRERSNVEAFEREHLAITARMDEAADEQALAKLRENVAKLEEEVWSLQKQKDEWMEKNS-------PERLIERLRIAINESETKSEALEKSMLSSSMHFDDFLSQYIACRQKYHERLWKLEQL 241
            VN  Y + Q L+N A   P    AFPEL S+S  +L++L+E+  + D+F+ KH   + +         NVE  +             A E  L +L+ +VA   + V +L+ + D+ +++ +       P+ + E LR A +ES  +SE + ++ L+  +  + FLS YI CR+    R  K E+L
Sbjct:  234 VNANYHQ-QSLSNQAQTKPQQSVAFPELNSLSNEELKLLNEDDDKLDEFLDKHSKLKDV---------NVEIDDAIDWVQKIAEANVAKEPELRELQSDVASKVQTVAALKARYDQLIQRYNKLSEVFTPDHIKECLRKAADESHEESERIAENFLNRKIDVERFLSTYIECRKLGQARRTKEEKL 409

The following BLAST results are available for this feature:

BLAST of Ggra2201.t1 vs. uniprot

BLAST of Ggra2201.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3J1H9	5.640e-115	69.92	Vacuolar protein sorting-associated protein 37A n=...	[more]
vacuolar protein sorting-associated protein 37A n=1 Tax=Colletes gigas TaxID=935657 RepID=UPI001C9B6F58	8.110e-7	29.57	vacuolar protein sorting-associated protein 37A n=...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 132..182
None	No IPR available	COILS	Coil	Coil	coord: 189..209
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..88
None	No IPR available	PANTHER	PTHR13678:SF2	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37A	coord: 14..243
None	No IPR available	PANTHER	PTHR13678	WILLIAMS-BEUREN SYNDROME CRITICAL REGION PROTEIN-RELATED	coord: 14..243
IPR009851	Modifier of rudimentary, Modr	PFAM	PF07200	Mod_r	coord: 91..237 e-value: 2.5E-17 score: 63.3
IPR009851	Modifier of rudimentary, Modr	PROSITE	PS51314	VPS37_C	coord: 166..252 score: 17.642477
IPR029012	Helix hairpin bin domain superfamily	GENE3D	1.10.287.660	Helix hairpin bin	coord: 170..247 e-value: 1.8E-9 score: 39.6
IPR037202	ESCRT assembly domain	SUPERFAMILY	140111	Endosomal sorting complex assembly domain	coord: 184..239

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000900_pilon	contig	tig00000900_pilon:625145..625903 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2201.t1	Ggra2201.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000900_pilon 625145..625903 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra2201.t1 ID=Ggra2201.t1|Name=Ggra2201.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=253bp
MWTGSSGAYRAPHPTQAPGDAPHTMWNNQDSGPSAYMWERDEVSRRLPHH
LNPSPAPNARLEVNQQYSRPQDLNNSADGIPDAPRAFPELESMSLRDLRV
LDEERARFDDFVSKHQYQQQLDSIVSRERSNVEAFEREHLAITARMDEAA
DEQALAKLRENVAKLEEEVWSLQKQKDEWMEKNSPERLIERLRIAINESE
TKSEALEKSMLSSSMHFDDFLSQYIACRQKYHERLWKLEQLQMEVKKKSF
GR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR009851	Mod_r
IPR029012	Helix_hairpin_bin_sf
IPR037202	ESCRT_assembly_dom