Ggra2201.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2201.t1
Unique NameGgra2201.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length253
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:625145..625903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9823.ENSSSCP00000007442
Preferred nameVPS37A
PFAMsMod_r
Max annot lvl33208|Metazoa
KEGG koko:K12185
KEGG Pathwayko04144,map04144
KEGG ModuleM00409
GOsGO:0000813,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005770,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006914,GO:0006996,GO:0007032,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010008,GO:0010256,GO:0012505,GO:0015630,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0019058,GO:0019068,GO:0019538,GO:0019941,GO:0022607,GO:0030163,GO:0031090,GO:0031410,GO:0031902,GO:0031974,GO:0031981,GO:0031982,GO:0032991,GO:0036257,GO:0036258,GO:0036452,GO:0039702,GO:0043162,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043632,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0046755,GO:0046907,GO:0051179,GO:0051234,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0061919,GO:0070013,GO:0070925,GO:0071704,GO:0071840,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:1901564,GO:1901565,GO:1901575
Evalue2.21e-06
EggNOG OGsKOG3270@1|root,KOG3270@2759|Eukaryota,39U41@33154|Opisthokonta,3BCVD@33208|Metazoa,3D12W@33213|Bilateria,488CK@7711|Chordata,4958Q@7742|Vertebrata,3J48V@40674|Mammalia,4IVZ4@91561|Cetartiodactyla
DescriptionVacuolar protein sorting-associated protein
COG categoryU
BRITEko00000,ko00001,ko00002,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2201Ggra2201Gracilaria gracilis GNS1m malegenetig00000900_pilon 625145..625903 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2201.t1.stop1Ggra2201.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 625145..625147 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2201.t1.CDS1Ggra2201.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 625145..625903 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2201.t1.exon1Ggra2201.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 625145..625903 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2201.t1.start1Ggra2201.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 625901..625903 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2201.t1Ggra2201.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 625145..625903 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2201.t1 ID=Ggra2201.t1|Name=Ggra2201.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=253bp
MWTGSSGAYRAPHPTQAPGDAPHTMWNNQDSGPSAYMWERDEVSRRLPHH
LNPSPAPNARLEVNQQYSRPQDLNNSADGIPDAPRAFPELESMSLRDLRV
LDEERARFDDFVSKHQYQQQLDSIVSRERSNVEAFEREHLAITARMDEAA
DEQALAKLRENVAKLEEEVWSLQKQKDEWMEKNSPERLIERLRIAINESE
TKSEALEKSMLSSSMHFDDFLSQYIACRQKYHERLWKLEQLQMEVKKKSF
GR*
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spliced messenger RNA

>Ggra2201.t1 ID=Ggra2201.t1|Name=Ggra2201.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=759bp|location=Sequence derived from alignment at tig00000900_pilon:625145..625903- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGACGGGTTCTAGCGGCGCCTATCGAGCACCGCATCCGACACAAGC
CCCAGGTGATGCACCTCATACAATGTGGAACAATCAGGACTCCGGACCTT
CGGCCTACATGTGGGAGAGGGATGAGGTCTCAAGGCGTCTTCCGCATCAC
CTCAATCCCTCACCAGCTCCAAATGCCAGATTAGAAGTGAACCAGCAGTA
TTCGCGACCACAAGACCTTAATAACTCTGCCGACGGCATTCCAGACGCCC
CAAGGGCTTTTCCAGAGCTAGAGTCCATGTCTCTTAGGGATTTAAGAGTT
TTGGACGAGGAAAGGGCCCGCTTCGATGATTTCGTATCGAAACACCAGTA
TCAGCAACAACTTGACTCCATAGTTTCACGAGAACGGAGTAACGTTGAAG
CTTTTGAACGAGAACACCTTGCAATCACAGCCAGAATGGATGAAGCAGCC
GATGAACAAGCTCTTGCAAAATTGCGTGAGAATGTGGCGAAACTTGAAGA
AGAAGTATGGTCTTTGCAGAAGCAGAAGGACGAATGGATGGAGAAGAACT
CCCCTGAACGGCTTATTGAAAGACTGCGGATCGCTATCAATGAATCCGAA
ACGAAGTCGGAAGCCTTGGAGAAGTCGATGTTATCCAGCTCAATGCATTT
TGACGATTTTCTCTCCCAGTACATCGCTTGTAGACAAAAATATCATGAAC
GATTATGGAAGTTGGAGCAACTTCAGATGGAGGTGAAGAAGAAATCCTTT
GGACGATAG
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protein sequence of Ggra2201.t1

>Ggra2201.t1 ID=Ggra2201.t1|Name=Ggra2201.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=253bp
MWTGSSGAYRAPHPTQAPGDAPHTMWNNQDSGPSAYMWERDEVSRRLPHH
LNPSPAPNARLEVNQQYSRPQDLNNSADGIPDAPRAFPELESMSLRDLRV
LDEERARFDDFVSKHQYQQQLDSIVSRERSNVEAFEREHLAITARMDEAA
DEQALAKLRENVAKLEEEVWSLQKQKDEWMEKNSPERLIERLRIAINESE
TKSEALEKSMLSSSMHFDDFLSQYIACRQKYHERLWKLEQLQMEVKKKSF
GR*
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mRNA from alignment at tig00000900_pilon:625145..625903-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2201.t1 ID=Ggra2201.t1|Name=Ggra2201.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=759bp|location=Sequence derived from alignment at tig00000900_pilon:625145..625903- (Gracilaria gracilis GNS1m male)
ATGTGGACGGGTTCTAGCGGCGCCTATCGAGCACCGCATCCGACACAAGC
CCCAGGTGATGCACCTCATACAATGTGGAACAATCAGGACTCCGGACCTT
CGGCCTACATGTGGGAGAGGGATGAGGTCTCAAGGCGTCTTCCGCATCAC
CTCAATCCCTCACCAGCTCCAAATGCCAGATTAGAAGTGAACCAGCAGTA
TTCGCGACCACAAGACCTTAATAACTCTGCCGACGGCATTCCAGACGCCC
CAAGGGCTTTTCCAGAGCTAGAGTCCATGTCTCTTAGGGATTTAAGAGTT
TTGGACGAGGAAAGGGCCCGCTTCGATGATTTCGTATCGAAACACCAGTA
TCAGCAACAACTTGACTCCATAGTTTCACGAGAACGGAGTAACGTTGAAG
CTTTTGAACGAGAACACCTTGCAATCACAGCCAGAATGGATGAAGCAGCC
GATGAACAAGCTCTTGCAAAATTGCGTGAGAATGTGGCGAAACTTGAAGA
AGAAGTATGGTCTTTGCAGAAGCAGAAGGACGAATGGATGGAGAAGAACT
CCCCTGAACGGCTTATTGAAAGACTGCGGATCGCTATCAATGAATCCGAA
ACGAAGTCGGAAGCCTTGGAGAAGTCGATGTTATCCAGCTCAATGCATTT
TGACGATTTTCTCTCCCAGTACATCGCTTGTAGACAAAAATATCATGAAC
GATTATGGAAGTTGGAGCAACTTCAGATGGAGGTGAAGAAGAAATCCTTT
GGACGATAG
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Coding sequence (CDS) from alignment at tig00000900_pilon:625145..625903-

>Ggra2201.t1 ID=Ggra2201.t1|Name=Ggra2201.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=759bp|location=Sequence derived from alignment at tig00000900_pilon:625145..625903- (Gracilaria gracilis GNS1m male)
ATGTGGACGGGTTCTAGCGGCGCCTATCGAGCACCGCATCCGACACAAGC
CCCAGGTGATGCACCTCATACAATGTGGAACAATCAGGACTCCGGACCTT
CGGCCTACATGTGGGAGAGGGATGAGGTCTCAAGGCGTCTTCCGCATCAC
CTCAATCCCTCACCAGCTCCAAATGCCAGATTAGAAGTGAACCAGCAGTA
TTCGCGACCACAAGACCTTAATAACTCTGCCGACGGCATTCCAGACGCCC
CAAGGGCTTTTCCAGAGCTAGAGTCCATGTCTCTTAGGGATTTAAGAGTT
TTGGACGAGGAAAGGGCCCGCTTCGATGATTTCGTATCGAAACACCAGTA
TCAGCAACAACTTGACTCCATAGTTTCACGAGAACGGAGTAACGTTGAAG
CTTTTGAACGAGAACACCTTGCAATCACAGCCAGAATGGATGAAGCAGCC
GATGAACAAGCTCTTGCAAAATTGCGTGAGAATGTGGCGAAACTTGAAGA
AGAAGTATGGTCTTTGCAGAAGCAGAAGGACGAATGGATGGAGAAGAACT
CCCCTGAACGGCTTATTGAAAGACTGCGGATCGCTATCAATGAATCCGAA
ACGAAGTCGGAAGCCTTGGAGAAGTCGATGTTATCCAGCTCAATGCATTT
TGACGATTTTCTCTCCCAGTACATCGCTTGTAGACAAAAATATCATGAAC
GATTATGGAAGTTGGAGCAACTTCAGATGGAGGTGAAGAAGAAATCCTTT
GGACGATAG
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