Ggra2174.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra2174.t1
Unique Name	Ggra2174.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	310

Homology

[Close]

BLAST of Ggra2174.t1 vs. uniprot
Match: A0A2V3J060 (RING-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J060_9FLOR)

HSP 1 Score: 219 bits (559), Expect = 1.260e-66
Identity = 108/189 (57.14%), Postives = 144/189 (76.19%), Query Frame = 0

Query:    1 MELSSTAFPSAVRTLASIVASITIIITIYLGYRKCVRDRDDSFIADRSREQQFG---ASNEEPGNAYSDEFLPVYVGDGRYVYVSRNELPRNPPHINRRNFNIPPRFDASTLKQFEAINEEKRYSCPICLEELQEEPVSAGQCLHLMHSSCLTSWLNKDINSNCPVCRVVIEESASLDKLSGKVMELAS 186
            +++ ST+FP+A+RTLAS+VAS+T+++TIYLGY+KC R+R DSF A+R RE   G    S ++  N + D  +PVYVG+GRY+Y+SR+E+PR P H+ R N    PRFDA +LK FEA   E++ +C ICLE+L+EE VSAGQCLHLMH++CL SWL KDINSNCPVCRV I ESASL+ L  + + + S
Sbjct:   17 VDVGSTSFPAAIRTLASVVASVTMVVTIYLGYKKCFRNRLDSFEAERRREAAHGFPLTSLDQGSNGFED-LVPVYVGEGRYMYISRDEIPRRPQHVVRVNSVHSPRFDADSLKIFEAGPSERQQACAICLEQLEEETVSAGQCLHLMHTNCLASWLRKDINSNCPVCRVRIFESASLESLGERAVGIPS 204

[Close]

BLAST of Ggra2174.t1 vs. uniprot
Match: A0A2V3IYA4 (RING-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYA4_9FLOR)

HSP 1 Score: 76.6 bits (187), Expect = 3.430e-13
Identity = 40/100 (40.00%), Postives = 57/100 (57.00%), Query Frame = 0

Query:   75 DGRYVYVSR--NELPRNPPHINRRNFNIPPRFDASTLKQFEAINEEKRYSCPICLEELQEEPVSAGQCLHLMHSSCLTSWLNKDINSNCPVCRVVIEESA 172
            +G  V +SR  +   R   H NR    +      ++L  F A  +++   C +CLE+L    VS+GQCLH++H+ CL +WL KD  + CPVCRV IEE A
Sbjct:   83 NGTAVEISRRTDTNVRRTSHGNRSINEV-----VNSLASFRAAEKDRALPCTVCLEDLGSRGVSSGQCLHVIHTDCLQTWLAKDKKNACPVCRVPIEEGA 177

[Close]

BLAST of Ggra2174.t1 vs. uniprot
Match: A0A2V3J0E8 (RING-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0E8_9FLOR)

HSP 1 Score: 75.1 bits (183), Expect = 6.420e-13
Identity = 40/102 (39.22%), Postives = 54/102 (52.94%), Query Frame = 0

Query:   55 ASNEEPGNAYSDEFLPVYVGDGRYVYVSRNELPRNPPHINRRNFNIPPRFDASTLKQFEAINEEKRYSCPICLEELQEEPVSAGQCLHLMHSSCLTSWLNKD 156
            A +  P  A+   + P+YV    +    ++     PP +        PR D   L  F+A  +EK   CPICL  L++E VS GQCLHL+H+SCL SWL KD
Sbjct:   19 AVSHPPRAAHHIHYNPMYVSAAPH----QSHPSAAPPELQ------DPRIDVDDLLSFDAPEKEKNNPCPICLAPLEDEQVSTGQCLHLIHTSCLRSWLAKD 110

[Close]

BLAST of Ggra2174.t1 vs. uniprot
Match: A0A2V3J043 (Putative E3 ubiquitin-protein ligase RHA1A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J043_9FLOR)

HSP 1 Score: 62.4 bits (150), Expect = 1.010e-7
Identity = 26/61 (42.62%), Postives = 35/61 (57.38%), Query Frame = 0

Query:  105 DASTLKQFEAINEEKRYSCPICLEELQEEPVSAGQCLHLMHSSCLTSWLNKDINSNCPVCR 165
            +  +L  F+         C ICLE L +  VS+GQCLHL+H +CL +WL     + CPVCR
Sbjct:   73 ETLSLASFKVAERHASRECAICLEALADNVVSSGQCLHLLHQTCLNAWLASSPRALCPVCR 133

The following BLAST results are available for this feature:

BLAST of Ggra2174.t1 vs. uniprot

BLAST of Ggra2174.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
A0A2V3J060	1.260e-66	57.14	RING-type domain-containing protein n=1 Tax=Gracil...	[more]
A0A2V3IYA4	3.430e-13	40.00	RING-type domain-containing protein n=1 Tax=Gracil...	[more]
A0A2V3J0E8	6.420e-13	39.22	RING-type domain-containing protein n=1 Tax=Gracil...	[more]
A0A2V3J043	1.010e-7	42.62	Putative E3 ubiquitin-protein ligase RHA1A n=1 Tax...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 122..165 e-value: 0.0093 score: 7.4
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 123..164 e-value: 1.7E-6 score: 37.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 122..165 e-value: 2.5E-10 score: 40.5
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 123..165 score: 12.769585
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 105..194 e-value: 1.5E-14 score: 55.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 226..261
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 226..292
None	No IPR available	PANTHER	PTHR22765:SF281	OS02G0248440 PROTEIN	coord: 97..172
None	No IPR available	PANTHER	PTHR22765	RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING	coord: 97..172
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..11
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 33..309
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..32
None	No IPR available	CDD	cd16448	RING-H2	coord: 123..165 e-value: 5.12501E-13 score: 60.5435
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 113..171
None	No IPR available	TMHMM	TMhelix		coord: 10..32

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000900_pilon	contig	tig00000900_pilon:547206..548135 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2174.t1	Ggra2174.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000900_pilon 547206..548135 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra2174.t1 ID=Ggra2174.t1|Name=Ggra2174.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=310bp
MELSSTAFPSAVRTLASIVASITIIITIYLGYRKCVRDRDDSFIADRSRE
QQFGASNEEPGNAYSDEFLPVYVGDGRYVYVSRNELPRNPPHINRRNFNI
PPRFDASTLKQFEAINEEKRYSCPICLEELQEEPVSAGQCLHLMHSSCLT
SWLNKDINSNCPVCRVVIEESASLDKLSGKVMELASSPHSVREAGLGLNM
ETGIDRQDDVRLPMTENVGSIQVETGAASQVIGSEAAESGSENNGERGNS
QQENPGWLSMNEVHTQRGVDRGDDASVLPTQDAIGSLTVGGSRRVIGTGI
DQEVAVADK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011016	Znf_RING-CH
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD